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Author SHA1 Message Date
Marius Bakke
3c5cbd3c9d
gnu: rust-digest: Update to 0.10.6. 
* gnu/packages/crates-io.scm (rust-digest-0.10): Update to 0.10.6.
 2022-12-02 22:21:42 +01:00
Marius Bakke
2066ae53f1
gnu: QtWebEngine: Use more system libraries. 
* gnu/packages/qt.scm (qtwebengine)[source](snippet): Remove more files.
[arguments]: Pass QT_FEATURES_system_foo for all supported libraries.
[inputs]: Replace "harfbuzz" with HARFBUZZ-5.
 2022-12-02 22:21:42 +01:00
Ricardo Wurmus
fd44d489b5
gnu: python-biom-format: Update to 2.1.12. 
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.12.
[arguments]: Remove "relax" phase; update "disable-broken-tests" phase.
[propagated-inputs]: Add python-scikit-bio.
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
b93e21a213
gnu: Add python-scikit-bio. 
* gnu/packages/bioinformatics.scm (python-scikit-bio): New variable.
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
b2a9feab92
gnu: Add python-hdmedians. 
* gnu/packages/statistics.scm (python-hdmedians): New variable.
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
62da3f9837
gnu: python-pairtools: Update to 1.0.2. 
* gnu/packages/bioinformatics.scm (python-pairtools): Update to 1.0.2.
[source]: Update Github URL.
[arguments]: Update patch in "fix-references" phase.
[native-inputs]: Remove python-nose.
[inputs]: Remove.
[propagated-inputs]: Add python-bioframe, python-pandas, python-pysam,
python-pyyaml, and python-scipy.
[home-page]: Update.
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
089b2e4f65
gnu: python-pairtools: Run tests conditionally. 
* gnu/packages/bioinformatics.scm (python-pairtools)[arguments]: Run tests
conditionally.
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
631ea9a411
gnu: python-pybedtools: Use pyproject-build-system. 
* gnu/packages/bioinformatics.scm (python-pybedtools)[build-system]: Use
pyproject-build-system.
[arguments]: Import (guix build pyproject-build-system).
 2022-12-02 21:46:36 +01:00
Ricardo Wurmus
a268b1ba91
gnu: python-htsget: Update to 0.2.6. 
* gnu/packages/bioinformatics.scm (python-htsget): Update to 0.2.6.
[build-system]: Use pyproject-build-system.
 2022-12-02 21:46:35 +01:00
Ricardo Wurmus
16ecce39d2
gnu: python-cellbender: Update to 0.2.2. 
* gnu/packages/bioinformatics.scm (python-cellbender): Update to 0.2.2.
[build-system]: Use pyproject-build-system.
 2022-12-02 21:46:35 +01:00
Ludovic Courtès
047425a662
syscalls: Adjust for lack of 'libutil.so' on glibc >= 2.34. 
This is a re-implementation of 3c8b6fd94c
done in a way that works for both glibc >= 2.34 and earlier versions.

* guix/build/syscalls.scm (syscall->procedure): When LIBRARY is true,
fall back to global symbols if (dynamic-link library) fails.

(cherry picked from commit 3f6c32a88f)
 2022-12-02 14:58:26 +01:00
Ludovic Courtès
883fefe160
gnu: guix: Update to 1.4.0rc1. 2022-11-30 23:04:29 +01:00
Ludovic Courtès
020184fd39
maint: Adjust sed script from 'release' target. 
This is a followup to fdafd40432.  This
effect would to set 'GUIX_DISPLAYED_VERSION' to the empty string.

* Makefile.am (release): Remove '/v' from sed script for
GUIX_DISPLAYED_VERSION.
 2022-11-30 20:02:41 +01:00
Ludovic Courtès
1aa7ee52c6
build: Build gnu/packages/*.go in two passes. 
This works around <https://issues.guix.gnu.org/59717>, whereby heap
usage would go beyond what's reasonable, preventing compilation of the
'guix' package on armhf-linux.

This is a followup to ef82ba9dd9.

* Makefile.am (MODULES_PACKAGES1, MODULES_PACKAGES): New variables.
(MODULES_PACKAGES): Define in terms of them and use :=.
(MODULES_CORE, MODULES_SYSTEM, MODULES_CLI, MODULES_PO): Define with :=.
 2022-11-30 19:58:33 +01:00
Ludovic Courtès
1bc9d5222f
maint: Leave 'gcc-toolchain' out for i586-gnu. 
This is a temporary measure to work around the fact that we're currently
lacking the necessary CPU power and human power to build everything up
to 'gcc-toolchain'.

* etc/release-manifest.scm (%base-packages/hurd): Comment out
"gcc-toolchain" for now.
 2022-11-28 13:51:51 +01:00
Ludovic Courtès
459e4f2a4f
Merge commit 'master' into version-1.4.0 2022-11-28 12:26:32 +01:00
Ludovic Courtès
a3264f31df
gnu: texinfo: Disable tests on GNU/Hurd. 
* gnu/packages/texinfo.scm (texinfo)[arguments]: Add #:tests? argument.
 2022-11-28 11:45:00 +01:00
Paul A. Patience
e6bffa99b1
gnu: cl-calispel: Fix homepage URL. 
* gnu/packages/lisp-xyz.scm (sbcl-calispel)[home-page]: Fix URL.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-28 09:34:01 +01:00
Paul A. Patience
1a4eb38bdd
gnu: Add cl-with-user-abort. 
* gnu/packages/lisp-xyz.scm (sbcl-with-user-abort, cl-with-user-abort,
  ecl-with-user-abort): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-28 09:32:10 +01:00
(unmatched-parenthesis
6f4bfc5263
gnu: Add aerc. 
* gnu/packages/mail.scm (aerc): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-11-28 02:12:48 -05:00
Andrew Tropin
ffc9986ee2
gnu: calibre: Add missing python-pycryptodome dependency. 
* gnu/packages/ebook.scm (calibre)[inputs]: Add missing python-pycryptodome
dependency.
 2022-11-28 10:50:30 +04:00
Bruno Victal
59bdfbb196
gnu: mympd: Update to 10.1.3 
* gnu/packages/mpd.scm (mympd): Update to 10.1.3.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-28 13:45:27 +08:00
Andrew Tropin
6cba399c04
gnu: telega: Use new package style. 
* gnu/packages/emacs-xyz.scm (emacs-telega, emacs-telega-contrib): Use gexps,
remove trailing #t.
 2022-11-28 09:44:00 +04:00
jgart
6fe253da9b
gnu: Add emacs-spongebob. 
* gnu/packages/emacs-xyz.scm (emacs-spongebob): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-11-28 06:26:06 +01:00
jgart
0bb20a2231
gnu: Add emacs-frowny. 
* gnu/packages/emacs-xyz.scm (emacs-frowny): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-11-28 06:26:06 +01:00
宋文武
efb67084b2
gnu: lxqt: Change version to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt): Use the version of liblxqt.
 2022-11-28 11:23:12 +08:00
宋文武
3cb0b6f222
gnu: screengrab: Update to 2.5.0. 
* gnu/packages/lxqt.scm (screengrab): Update to 2.5.0.
 2022-11-28 11:14:01 +08:00
宋文武
23be2e56f9
gnu: qtermwidget: Update to 1.2.0. 
* gnu/packages/lxqt.scm (qtermwidget): Update to 1.2.0.
 2022-11-28 11:14:01 +08:00
宋文武
eaff6c2491
gnu: qps: Update to 2.6.0. 
* gnu/packages/lxqt.scm (qps): Update to 2.6.0.
 2022-11-28 11:14:01 +08:00
宋文武
114d2e0080
gnu: pavucontrol-qt: Update to 1.2.0. 
* gnu/packages/lxqt.scm (pavucontrol-qt): Update to 1.2.0.
 2022-11-28 11:14:01 +08:00
宋文武
18e53bd145
gnu: lximage-qt: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lximage-qt): Update to 1.2.0.
 2022-11-28 11:14:01 +08:00
宋文武
0a03e718d2
gnu: lxqt-themes: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-themes): Update to 1.2.0.
 2022-11-28 11:14:01 +08:00
宋文武
ddd7041d9f
gnu: lxqt-sudo: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-sudo): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
83c6883e87
gnu: lxqt-session: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-session): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
a5d62afcf5
gnu: lxqt-runner: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-runner): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
15f98b84d8
gnu: lxqt-qtplugin: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-qtplugin): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
01d53f86e0
gnu: lxqt-powermanagement: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-powermanagement): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
e7bdc6b56d
gnu: lxqt-policykit: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-policykit): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
5d83673f41
gnu: lxqt-panel: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-panel): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
8e4bd061e2
gnu: lxqt-openssh-askpass: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
c763705725
gnu: lxqt-notificationd: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-notificationd): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
e67f3e0e07
gnu: lxqt-globalkeys: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-globalkeys): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
07acbd1e40
gnu: lxqt-config: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-config): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
18545301e0
gnu: lxqt-admin: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-admin): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
a50229f564
gnu: lxqt-about: Update to 1.2.0. 
* gnu/packages/lxqt.scm (lxqt-about): Update to 1.2.0.
 2022-11-28 11:14:00 +08:00
宋文武
ae903a2a74
gnu: qtxdg-tools: Update to 3.10.0. 
* gnu/packages/lxqt.scm (qtxdg-tools): Update to 3.10.0.
 2022-11-28 11:14:00 +08:00
宋文武
0d9fcb0ce8
gnu: lxqt-archiver: Update to 0.7.0. 
* gnu/packages/lxqt.scm (lxqt-archiver): Update to 0.7.0.
 2022-11-28 09:59:46 +08:00
宋文武
ab1e572789
gnu: qterminal: Update to 1.2.0. 
* gnu/packages/lxqt.scm (qterminal): Update to 1.2.0.
 2022-11-28 09:59:46 +08:00
宋文武
c29d4126a8
gnu: pcmanfm-qt: Update to 1.2.0. 
* gnu/packages/lxqt.scm (pcmanfm-qt): Update to 1.2.0.
 2022-11-28 09:59:46 +08:00
宋文武
1d8c01ef01
gnu: libfm-qt: Update to 1.2.0. 
* gnu/packages/lxqt.scm (libfm-qt): Update to 1.2.0.
 2022-11-28 09:59:46 +08:00