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Author SHA1 Message Date
Maxim Cournoyer
957f4e4c22
gnu: linux-libre: Validate that the cleaned up tarball is free of blobs. 
* gnu/packages/linux.scm (make-linux-libre-source): Call the deblob-check
script on the generated tarball archive with the --use-awk and --list-blobs
options.
 2020-09-04 21:45:44 -04:00
Maxim Cournoyer
8b41fdaf3f
gnu: make-linux-libre-source: Set output port buffering to line mode. 
* gnu/packages/linux.scm (make-linux-libre-source): Set output port buffering
to line mode via setvbuf.  Remove the ad-hoc calls to force-output.
 2020-09-04 21:45:44 -04:00
Paul Garlick
49bf16b6b1
gnu: texlive-logreq: Correct synopsis. 
* gnu/packages/tex.scm (texlive-logreq)[synopsis]: Correct.
 2020-09-04 22:30:11 +01:00
Ricardo Wurmus
468069260c
gnu: r-mnormt: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.2.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
5e7480350f
gnu: r-rfast: Update to 2.0.0. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.0.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
7f1358db61
gnu: r-systemfonts: Update to 0.3.0. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.0.
[propagated-inputs]: Add r-cpp11.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
274aa8252c
gnu: r-xgboost: Update to 1.2.0.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.2.0.1.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
9a1c809d61
gnu: r-ingredients: Update to 2.0. 
* gnu/packages/cran.scm (r-ingredients): Update to 2.0.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
1926764b9c
gnu: r-xmlparsedata: Update to 1.0.4. 
* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.4.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
667e8c85e4
gnu: r-rnifti: Update to 1.2.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.1.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
350bef92de
gnu: r-trend: Update to 1.1.3. 
* gnu/packages/cran.scm (r-trend): Update to 1.1.3.
 2020-09-04 22:01:41 +02:00
Ricardo Wurmus
510443a096
gnu: r-ttr: Update to 0.24.2. 
* gnu/packages/cran.scm (r-ttr): Update to 0.24.2.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus
40f378e18a
gnu: r-cicero: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus
6bc6a71119
gnu: r-mixomics: Update to 6.12.2. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus
60cc838403
gnu: r-atacseqqc: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus
e1636671ec
gnu: r-gkmsvm: Update to 0.81.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
 2020-09-04 22:01:40 +02:00
Ricardo Wurmus
0d2369be8b
gnu: r-chippeakanno: Update to 3.22.3. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
 2020-09-04 22:01:40 +02:00
Tobias Geerinckx-Rice
84479dccd1
gnu: gmic: Update to 2.9.2. 
* gnu/packages/image-processing.scm (gmic): Update to 2.9.2.
 2020-09-04 20:56:07 +02:00
Tobias Geerinckx-Rice
b1e5eb31cd
gnu: cifs-utils: Update to 6.11 [fixes CVE-2020-14342]. 
* gnu/packages/samba.scm (cifs-utils): Update to 6.11.
 2020-09-04 20:56:07 +02:00
Tobias Geerinckx-Rice
c7aee804ea
gnu: python-paramiko: Update to 2.7.2. 
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.2.
 2020-09-04 20:56:06 +02:00
Paul Garlick
b01c04eb0c
gnu: Add texlive-logreq. 
* gnu/packages/tex.scm (texlive-logreq): New variable.
 2020-09-04 18:43:18 +01:00
Eric Bavier
46daff38bc
gnu: fpc: Fix reproducibility problem. 
* gnu/packages/pascal.scm (fpc)[arguments]: Add 'patch-release-date' to
replace a build timestamp with the release date instead.
 2020-09-04 09:33:13 -05:00
Ludovic Courtès
e9db10ae7f
gnu: guix-jupyter: Fix compilation with Guile-JSON >= 4.3.x. 
Reported by wehlutyk on #guix.

* gnu/packages/package-management.scm (guix-jupyter)[source]: Avoid
'define-json-mapping' name clash with Guile-JSON.
 2020-09-04 15:58:42 +02:00
Lars-Dominik Braun
d6983b1331
gnu: r-httpuv: Unvendor libuv. 
* gnu/packages/cran.scm (r-httpuv) [source]: Remove bundled libuv, add
patch.
[arguments] Rewrite header locations, fix pipe server issue.
[inputs] Add libuv.
* gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-04 15:58:42 +02:00
Pierre Langlois
89e1e44813
gnu: taglib: Update to 1.12-beta-1 [security fixes]. 
This switches to a yet unreleased version of taglib, to make sure long
standings issues and CVEs are covered until a proper release is made
upstream.

Among these, we have:

- CVE-2017-12678
- CVE-2018-11439
- https://github.com/taglib/taglib/issues/864

* gnu/packges/mp3.scm (taglib): Update to 1.12-beta-1.
[source]: Switch to using git-fetch.
 2020-09-04 12:04:43 +01:00
Pierre Langlois
235093fec0
gnu: node: Update 10.22.0. 
* gnu/packages/node.scm (node): Update to 10.22.0.
[inputs]: Replace nghttp2 with nghttp2-1.41.
 2020-09-04 12:04:43 +01:00
Pierre Langlois
852ae64e11
gnu: Remove emacs-seq package. 
It is included with emacs and installing it alongside emacs 27 causes issues.

Fixes <https://bugs.gnu.org/43138>.

* gnu/packages/emacs-xyz.scm (emacs-bugs-hunter)[propagated-inputs]: Remove.
(emacs-erc-status-sidebar)[propagated-inputs]: Remove.
(emacs-psc-ide)[propagated-inputs]: Remove emacs-seq.
(emacs-biblio)[propagated-inputs]: Remove emacs-seq.
(emacs-seq): Delete variable.
(emacs-flycheck-haskell)[propagated-inputs]: Remove emacs-seq.
 2020-09-04 12:04:42 +01:00
Arun Isaac
743be81341
gnu: emacs-auctex: Configure executable paths. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Configure absolute paths to
ghostscript and texlive executables.
[inputs]: Add ghostscript.
 2020-09-04 15:55:52 +05:30
Morgan Smith
36a7af8161
gnu: Add emacs-org-edna. 
* gnu/packages/emacs-xyz.scm (emacs-org-edna): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-04 11:46:12 +02:00
Guillaume Le Vaillant
a43f825d4e
gnu: txr: Update to 243. 
* gnu/packages/lisp.scm (txr): Update to 243.
 2020-09-04 11:38:16 +02:00
Prafulla Giri
3f663e57ab
gnu: kdenlive: Add ffmpeg to input list 
* gnu/packages/kde.scm (kdenlive): Add ffmpeg to inputs and wrap
the final binary accordingly to have ffmpeg in it's PATH.
[inputs]: Add ffmpeg.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-04 11:29:51 +02:00
Ludovic Courtès
d60f63a838
.guix-authorizations: Add planglois to the committers. 
* .guix-authorizations: Add planglois.
 2020-09-04 11:29:51 +02:00
Vinicius Monego
9db1b3786f
gnu: darktable: Add dependency on libavif, ocl-icd. 
* gnu/packages/photo.scm (darktable)[inputs]: Add libavif, ocl-icd.
[arguments]: Set LD_LIBRARY_PATH for OpenCL.
[supported-systems]: Remove i686 which is not supported anymore.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-04 11:29:51 +02:00
Vinicius Monego
c49025480e
gnu: darktable: Update to 3.2.1. 
* gnu/packages/photo.scm (darktable): Update to 3.2.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-04 11:29:51 +02:00
Ludovic Courtès
2fc8337a14
doc: Document 'file-system-label' and 'uuid'. 
* doc/guix.texi (File Systems): Document 'file-system-label' and 'uuid'.
 2020-09-04 11:29:51 +02:00
Ludovic Courtès
fe409700d8
doc: Syntax highlighting now handles @var within @lisp. 
* doc/build.scm (syntax-highlighted-html)[build](concatenate-pieces):
Handle @var{name}.
 2020-09-04 11:29:51 +02:00
Ludovic Courtès
720fd7320f
doc: Balance parens in R Shiny example. 
* doc/guix.texi (Miscellaneous Services): Balance parens in R Shiny
example.
 2020-09-04 11:29:51 +02:00
Tobias Geerinckx-Rice
eb3328004e
gnu: php: Update to 7.4.10. 
* gnu/packages/php.scm (php): Update to 7.4.10.
 2020-09-04 11:01:04 +02:00
Michael Rohleder
0c7f478e83
gnu: liblinphone: Add installation of man pages. 
* gnu/packages/linphone.scm (liblinphone)[arguments]: Add phase
'install-man-pages.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-04 08:20:22 +02:00
Maxim Cournoyer
b9a7fa817a
gnu: linux-libre: Use Python 3 in make-linux-libre-source. 
Successfully tested with all of the linux-libre versions we carry in Guix:
4.4.234, 4.9.234, 4.14.195, 4.19.142, 5.4.61 and 5.8.5.

* gnu/packages/linux.scm (make-linux-libre-source): Replace python-2 by
python-wrapper.  Do not set the PYTHON environment variable, which is not
required when using python-wrapper.
 2020-09-03 23:04:40 -04:00
Maxim Cournoyer
ed66095679
gnu: nix: Add the "--enable-gc" configure flag to fix build. 
Fixes <http://issues.guix.gnu.org/43181>.

* gnu/packages/package-management.scm (nix)[configure-flags]: Add the
"--enable-gc" option.
 2020-09-03 22:36:11 -04:00
Ludovic Courtès
84f38f036f
ci: In the 'core' subset, build GCC >= 7. 
Suggested by Jan Nieuwenhuizen <janneke@gnu.org>.

* gnu/ci.scm (%core-packages): Keep only GCC >= 7.
 2020-09-03 23:26:53 +02:00
Ludovic Courtès
8e6c9005b4
gnu: Add bitlbee-purple. 
* gnu/packages/messaging.scm (bitlbee-purple): New variable.
 2020-09-03 23:23:58 +02:00
Ludovic Courtès
6a1788e13a
doc: Add "Getting Started" section. 
* doc/guix.texi (Getting Started): New node.
(Binary Installation): Refer to it and to "Application Setup".
(After System Installation): Refer to "Getting Started".
(Features): Add introductory sentence.
 2020-09-03 23:23:58 +02:00
Mark H Weaver
990c219f1c
gnu: linux-libre: Update to 5.8.6. 
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.6.
(linux-libre-5.8-pristine-source): Update hash.
(deblob-scripts-5.8): Update to 5.8.6.
 2020-09-03 14:09:01 -04:00
Mark H Weaver
a53a384819
gnu: linux-libre@5.4: Update to 5.4.62. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.62.
(linux-libre-5.4-pristine-source): Update hash.
(deblob-scripts-5.4): Update to 5.4.62.
 2020-09-03 14:08:59 -04:00
Mark H Weaver
1ef3754ad3
gnu: linux-libre@4.19: Update to 4.19.143. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.143.
(linux-libre-4.19-pristine-source): Update hash.
(deblob-scripts-4.19): Update to 4.19.143.
 2020-09-03 14:08:56 -04:00
Mark H Weaver
bda184c4c3
gnu: linux-libre@4.14: Update to 4.14.196. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.196.
(linux-libre-4.14-pristine-source): Update hash.
(deblob-scripts-4.14): Update to 4.14.196.
 2020-09-03 14:08:54 -04:00
Mark H Weaver
a0aa0b6be8
gnu: linux-libre@4.9: Update to 4.9.235. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.235.
(linux-libre-4.9-pristine-source): Update hash.
(deblob-scripts-4.9): Update to 4.9.235.
 2020-09-03 14:08:52 -04:00
Mark H Weaver
ab5a3155a2
gnu: linux-libre@4.4: Update to 4.4.235. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.235.
(linux-libre-4.4-pristine-source): Update hash.
(deblob-scripts-4.4): Update to 4.4.235.
 2020-09-03 14:08:45 -04:00