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67528 commits

Author SHA1 Message Date
Ricardo Wurmus
41bbbd53d2
gnu: asymptote: Use patched texlive-amsfonts.
Fixes <https://bugs.gnu.org/39101>.

* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus
11caa5f68a
gnu: emacs-auctex: Use patched texlive-amsfonts.
* gnu/packages/emacs-xyz.scm (emacs-auctex)[inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus
701a115533
gnu: dblatex: Use patched texlive-amsfonts.
* gnu/packages/docbook.scm (dblatex)[inputs]: Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
Ricardo Wurmus
c2b6d36b66
gnu: pari-gp: Use patched texlive-amsfonts.
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:13 +02:00
Pierre Neidhardt
c128d4f931
gnu: sbcl-cmd: Update to 20210531.
* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20210531.
2021-06-05 09:24:59 +02:00
Ricardo Wurmus
8f12002f6e
gnu: r-sushi: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.30.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
abe7628a05
gnu: r-guitar: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.8.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
3a5642d72e
gnu: r-chromstar: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.18.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
3e2052e7da
gnu: r-snpstats: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.42.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
8fa5a4d753
gnu: r-pathview: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.32.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
b4cea45e7c
gnu: r-ldblock: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.0.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
2860208c42
gnu: r-kegggraph: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.52.0.
[propagated-inputs]: Add r-rgraphviz.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
a06d13be09
gnu: r-gwascat: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.24.0.
[propagated-inputs]: Add r-annotationhub.
2021-06-05 09:12:58 +02:00
Ricardo Wurmus
bdfa1178b9
gnu: r-gviz: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
46b7d19dcc
gnu: r-ggbio: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.40.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
bd6d0007d9
gnu: r-erma: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.8.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
8ad54dc134
gnu: r-catalyst: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
2fe8673263
gnu: r-msmstests: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
e501608db3
gnu: r-msmseda: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
b5a387745a
gnu: r-biocio: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.2.0.
[propagated-inputs]: Remove r-genomicranges and r-rcurl.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
aaf095825b
gnu: r-mscoreutils: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.4.0.
[propagated-inputs]: Add r-clue.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
47e291df84
gnu: r-delayedmatrixstats: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.0.
[propagated-inputs]: Remove r-biocparallel and r-hdf5array.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
360477c202
gnu: r-sparsematrixstats: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
015ba64bc0
gnu: r-scran: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.20.1.
[propagated-inputs]: Remove r-biocneighbors; add r-metapod.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
d9755a22f6
gnu: r-scater: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.0.
[propagated-inputs]: Add r-beachmat, r-rcolorbrewer, and r-rtsne.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
851894f8da
gnu: r-scuttle: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.0.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
b21a73c00b
gnu: r-singlecellexperiment: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.14.1.
[propagated-inputs]: Add r-delayedarray and r-genomicranges.
2021-06-05 09:12:57 +02:00
Ricardo Wurmus
71e392966a
gnu: r-chromvar: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
56a2dcfdc7
gnu: r-motifmatchr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
0b6b42b6c4
gnu: r-tfbstools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.30.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
a92a277873
gnu: r-cner: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.28.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
370d020e88
gnu: r-beachmat: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.0.
[propagated-inputs]: Add r-rcpp.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
dbb929bf4a
gnu: r-hitc: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.36.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
914bd41da9
gnu: r-fithic: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.18.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
64b03c66ad
gnu: r-rgraphviz: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.36.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
5565b8bada
gnu: r-s4vectors: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
a78daaa572
gnu: r-preprocesscore: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.54.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
a9f203ba6c
gnu: r-icens: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.64.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
3b19239c0f
gnu: r-m3c: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
06dd2fd625
gnu: r-rgreat: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.24.0.
2021-06-05 09:12:56 +02:00
Ricardo Wurmus
5d611d3f15
gnu: r-pcatools: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.4.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
db46064043
gnu: r-biodist: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.64.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
36f51f8afe
gnu: r-biocworkflowtools: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
e828fa21bb
gnu: r-biocset: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
e9e4f65dc1
gnu: r-biocpkgtools: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.1.
[propagated-inputs]: Remove r-rappdirs.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
2023951c8e
gnu: r-biocor: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.16.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
4faded238e
gnu: r-bioconcotk: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
e7b465e81b
gnu: r-multiassayexperiment: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
37f824c5e7
gnu: r-grohmm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.26.0.
2021-06-05 09:12:55 +02:00
Ricardo Wurmus
28613e1000
gnu: r-experimenthub: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.0.0.
2021-06-05 09:12:55 +02:00