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Author SHA1 Message Date
Nicolas Goaziou
ac0e32fca2
gnu: emacs-ebib: Update to 2.40.3. 
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.40.3.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: I7d37822ee5c41f5155ceb8e6b518a86dfcc9b5b3
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou
8853096fbb
gnu: emacs-docker: Update to 2.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-docker): Update to 2.3.1.

Change-Id: Ib463a11ce6295118a846692b480edc4464a80d8f
 2024-01-02 00:43:06 +01:00
Nicolas Goaziou
baea8607b6
gnu: emacs-denote: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-denote): Update to 2.2.0.

Change-Id: I0552023075748b859dff361794726b7955873d0d
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou
113cb79808
gnu: emacs-corfu: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 1.1.

Change-Id: Ic2737697cfe4f5005172e05ab5d7343eb9f0ca23
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou
9e02261d5e
gnu: emacs-consult-flycheck: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-consult-flycheck): Update to 1.0.

Change-Id: Ic52b212be42f59f70365d907d6b8992b7fc1101e
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou
116b63bbab
gnu: emacs-consult: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 1.1.

Change-Id: I303c64cef5419be1b8ff66a30ca9b7f8f44ccfa1
 2024-01-02 00:43:05 +01:00
Nicolas Goaziou
f1059e2c26
gnu: emacs-code-cells: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-code-cells): Update to 0.4.

Change-Id: Iac21fa3441fc85387ebc3d404205bd4f8716359f
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou
4103d685c0
gnu: emacs-clojure-mode: Update to 5.18.1. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.18.1.

Change-Id: I374f3ebca45fdce8ed84036fe999ace26d73c1ea
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou
ea2eaaa46c
gnu: emacs-clj-refactor: Update to 3.11.2. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.11.2.

Change-Id: I338a2a8a172d5ea486f1d693b7a8c52cca3ec1f7
 2024-01-02 00:43:04 +01:00
Nicolas Goaziou
8b41c305d8
gnu: emacs-cider: Update to 1.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.12.0.

Change-Id: Icc26d1b51125913009e425279d59db123d3722e1
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou
3b8ff1d101
gnu: emacs-cape: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 1.1.

Change-Id: I7b2c1c415e62d4c13d0f3d5b946d93423dc08fb4
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou
551e159467
gnu: emacs-async: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-async)[arguments]: Run tests.
[native-inputs]: Add EMACS-BUTTERCUP.

Change-Id: Ifa442644dbd259afb5584fbb4160a8b2346a6364
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou
0f9beffa43
gnu: emacs-async: Update to 1.9.8. 
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.8.

Change-Id: I2b83724cee2f77d49417c104f7ab0bf299c671ea
 2024-01-02 00:43:03 +01:00
Nicolas Goaziou
78c55428c3
gnu: emacs-buttercup: Update to 1.33. 
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.33.

Change-Id: Ie98b77b883b084886797680ef317b9668f1d0445
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou
3320775063
gnu: emacs-beframe: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-beframe): Update to 1.0.0.

Change-Id: I1df7f004c24cc783869421f656a59610006fcf90
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou
0306d83bed
gnu: emacs-apheleia: Update to 4.0. 
* gnu/packages/emacs-xyz.scm (emacs-apheleia): Update to 4.0.

Change-Id: I2d61a20e434400f8dbae7d33894ab6f6134c9630
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou
30a7f0212a
gnu: emacs-vertico-posframe: Update to 0.7.5. 
* gnu/packages/emacs-xyz.scm (emacs-vertico-posframe): Update to 0.7.5.

Change-Id: Ifff04b43f978e0664cafca2ab8b8e5a8b826bca4
 2024-01-02 00:43:02 +01:00
Nicolas Goaziou
9e195fa0ed
gnu: emacs-ebdb: Update to 0.8.20. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.20.

Change-Id: Ib3420c220beadc022bf3e65c8d904a0237f9dd18
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou
08c08b22b2
gnu: emacs-tramp: Update to 2.6.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.0.

Change-Id: Id3db704243d269b1b0979a4ed2fe36bd42f8e9bb
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou
4dc30915cc
gnu: emacs-kind-icon: Update to 0.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.2.1.

Change-Id: Id0fe5f72a3252cf3bf7348cd45db89da9e80b6ec
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou
cab4cf27dc
gnu: emacs-eldoc: Update to 1.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-eldoc): Update to 1.15.0.

Change-Id: Icea7f7d60301892e9476b930ab19a85f41b29f4f
 2024-01-02 00:43:01 +01:00
Nicolas Goaziou
6ca99feaf5
gnu: emacs-subed: Update to 1.2.11. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.11.

Change-Id: Ib3838ec91afdeefef267df49394ee4b1f75fa63a
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou
2bfcb104b7
gnu: emacs-auctex: Update to 13.2.3. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.3.

Change-Id: Iabeb142f7fe1f5fcf925f788263c76eb0bbf1382
 2024-01-02 00:43:00 +01:00
Nicolas Goaziou
8f8fbb79ba
gnu: emacs-rec-mode: Update to 1.9.3. 
* gnu/packages/databases.scm (emacs-rec-mode): Update to 1.9.3.

Change-Id: I4268c08171b75442a6ba5b5da2887ae9764df98d
 2024-01-02 00:42:55 +01:00
Ricardo Wurmus
ee0cf3b9ff
gnu: r-seurat-utils: Update to 2.5.0-1.c0374cc. 
* gnu/packages/bioinformatics.scm (r-seurat-utils): Update to 2.5.0-1.c0374cc.
[propagated-inputs]: Add r-databaselinke-r, r-enhancedvolcano, r-foreach,
r-job, r-magrittr, r-pheatmap, r-plotly, r-qs, r-rstudioapi, and r-tidyverse.

Change-Id: Iea2df8205357e7717c0adec00f6852794817d295
 2024-01-01 19:22:11 +01:00
Ricardo Wurmus
679560ffca
gnu: Add r-databaselinke-r. 
* gnu/packages/bioinformatics.scm (r-databaselinke-r): New variable.

Change-Id: I0cfcb5b6810b7afebbb9ccb02aafcce05507536c
 2024-01-01 19:21:59 +01:00
Ricardo Wurmus
510c2206e4
gnu: Add r-job. 
* gnu/packages/cran.scm (r-job): New variable.

Change-Id: I37a0870bd22d5bc2e700f843fca49f242a197440
 2024-01-01 19:21:37 +01:00
Ricardo Wurmus
ff586211aa
gnu: Remove r-rmetasim. 
This package fails to build and has been archived on CRAN in 2021.

* gnu/packages/cran.scm (r-rmetasim): Remove variable.

Change-Id: I46a6c98d7e05faac6f83e29dfb21196a69bae56b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
00e6f55ddb
gnu: r-batchelor: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1.

Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
c8d1f64f40
gnu: r-genomeinfodb: Update to 1.38.5. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5.

Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
b0580a05be
gnu: r-seuratdisk: Update to 0.0.0.9021-1.877d4e1. 
* gnu/packages/cran.scm (r-seuratdisk): Update to 0.0.0.9021-1.877d4e1.

Change-Id: Iab1426efe5b792aacf19ab15e9d6d95be0bac38b
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
2510849ec9
gnu: r-sparsearray: Update to 1.2.3. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3.

Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
31e882e4b1
gnu: r-genomicscores: Update to 2.14.3. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3.

Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
e15b95c126
gnu: r-metapod: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1.

Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
5673484cbc
gnu: r-biocneighbors: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1.

Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
a72c6ba19a
gnu: r-genomeinfodb: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4.

Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
25d7dbd61c
gnu: Add r-inext. 
* gnu/packages/cran.scm (r-inext): New variable.

Change-Id: I6a87cfb57bfc8000520b98999cf260d2873f0b61
 2024-01-01 14:35:16 +01:00
Ricardo Wurmus
513994aead
import/cran: Restore format-inputs. 
This fixes a regression introduced in commit
e6223017d9 causing the selected input style to
be ignored.

* guix/import/cran.scm (format-inputs): New procedure.
(maybe-inputs): Use it.

Change-Id: I0d36f972fcb9888ed2be4ec9360bbcab13c25c5d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
a2a8c4c13a
gnu: r-fpc: Update to 2.2-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-11.

Change-Id: Iebf343be3f9ce37fc9d740286b185e9c5c733efb
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
79fe5cbad0
gnu: r-cowplot: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.2.

Change-Id: Ie1688b1eb38e2c3ef04460cc4dd7c35179b6c48e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
df69fcac77
gnu: r-vipor: Update to 0.4.7. 
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.7.

Change-Id: I7a7442ae64d5a96a4ab20427ab5fb8bcdc2e51e2
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
8047e5328b
gnu: r-matrixstats: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.2.0.

Change-Id: I08ad75b3cdfefdeb9718086be75bb24153e117c9
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
2b2ad78597
gnu: r-segmented: Update to 2.0-1. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-1.

Change-Id: Ieb6dac2712af46fffd29959d9510153dd1f1fb5d
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
cd1ea61bc0
gnu: r-brew: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-brew): Update to 1.0-10.

Change-Id: I8d3045477d8b329f0c626738a0cd8cf02862e34c
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
373c9b4efc
gnu: r-yaml: Update to 2.3.8. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.3.8.

Change-Id: I0b654db60d894e160c1ad8aa77000fc90ea649c3
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
da28470890
gnu: r-dbi: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.2.0.

Change-Id: I4384d37dd602b396fce736ff5c3b33e3da965233
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
7f7c2a4805
gnu: r-stringi: Update to 1.8.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.3.

Change-Id: Id600b65a926a233400870444ad3028690be3e92e
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
5106fc899a
gnu: r-mgcv: Update to 1.9-1. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-1.

Change-Id: I9275750902b6e2d2bd1c7394363bdbc66043c4de
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
b9e33a7fd4
gnu: r-ggh4x: Update to 0.2.7. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.7.

Change-Id: I0211d69404806922d6725f4936593573674d7e59
 2024-01-01 14:35:15 +01:00
Ricardo Wurmus
ba23ca977e
gnu: r-ragg: Update to 1.2.7. 
* gnu/packages/cran.scm (r-ragg): Update to 1.2.7.

Change-Id: I95f8c91f678181066745cad09295c4bcf24993de
 2024-01-01 14:35:15 +01:00