ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-24 21:38:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions
12514 commits 1 branch 0 tags 448 MiB
Commit graph

8906 commits

Author SHA1 Message Date
Efraim Flashner
1a847b708d
gnu: mpc123: Use 'modify-phases'. 
* gnu/packages/mp3.scm (mpc123)[arguments]: Use 'modify-phases'.
 2016-05-27 11:37:53 +03:00
Efraim Flashner
d1cd67af5d
gnu: mpc123: Add new source location. 
* gnu/packages/mp3.scm (mpc123)[source]: Add Debian mirror.
[home-page]: Project has moved to Github.
 2016-05-27 11:37:53 +03:00
humanitiesNerd
d345491ab4
gnu: Add emacs-epl. 
* gnu/packages/emacs.scm (emacs-epl): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-27 11:02:54 +03:00
Alex Kost
a8ce82aca2
gnu: emacs-async: Update to 1.9. 
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.
 2016-05-27 10:50:37 +03:00
Alex Kost
847534e1d3
gnu: magit: Update to 2.7.0. 
* gnu/packages/emacs.scm (magit): Update to 2.7.0.
 2016-05-27 10:50:37 +03:00
Efraim Flashner
be1e35055b
gnu: moreutils: Use 'modify-phases'. 
* gnu/packages/moreutils.scm (moreutils)[arguments]: Use 'modify-phases'.
 2016-05-27 07:06:02 +03:00
Efraim Flashner
0a20f40240
gnu: moreutils: Update to 0.58. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.58.
 2016-05-27 07:03:52 +03:00
Ludovic Courtès
de3bbf6543
gnu: qemu: Make tests more verbose. 
* gnu/packages/qemu.scm (qemu)[arguments]: Add 'make-gtester-verbose'
phase.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès
8489d79d1b
gnu: qemu: Use 'install-file' instead of 'copy-file'. 
* gnu/packages/qemu.scm (qemu)[arguments]: Use 'install-file'.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès
05051e8bb1
gnu: qemu: Use 'modify-phases'. 
* gnu/packages/qemu.scm (qemu)[arguments]: Use 'modify-phases'.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès
219b45567a
gnu: qemu: Disable parallel tests again. 
* gnu/packages/qemu.scm (qemu)[arguments]: Re-add #:parallel-tests? #f,
which had been removed in a2ccaa0d79.
 2016-05-26 23:58:21 +02:00
Ludovic Courtès
159a5e0197
gnu: isc-dhcp: Specify CPE name. 
* gnu/packages/admin.scm (isc-dhcp)[properties]: New field.
 2016-05-26 22:56:51 +02:00
Ludovic Courtès
2ca55f939c
gnu: rush: Fix CVE-2013-6889. 
* gnu/packages/patches/rush-CVE-2013-6889.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rush.scm (rush): Use it.
 2016-05-26 22:51:12 +02:00
David Thompson
9698f4b74b gnu: Add mitlm. 
* gnu/packages/speech.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-05-26 08:50:09 -04:00
David Thompson
6b0686fa93 gnu: Add autoconf-archive. 
* gnu/packages/autotools.scm (autoconf-archive): New variable.
 2016-05-26 08:50:09 -04:00
Manolis Ragkousis
38efbcbb79
gnu: hurd: Add hurd-core-headers package. 
* gnu/packages/hurd.scm (hurd-core-headers): New variable.
 2016-05-26 14:41:56 +03:00
Roel Janssen
4791876ce1
gnu: Add texmaker. 
* gnu/packages/tex.scm (texmaker): New variable.
 2016-05-26 10:24:13 +02:00
Roel Janssen
8f9ac90182
gnu: Rename texlive module to tex. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
 2016-05-26 10:22:05 +02:00
Efraim Flashner
5bed95efd4
gnu: aria2: Update to 1.23.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.23.0.
[inputs]: Move cppunit ...
[native-inputs]: ... to here.
[home-page]: Update to new Github website.
 2016-05-26 08:59:41 +03:00
Efraim Flashner
25e0037a29
gnu: randomjungle: Add gfortran:lib to native-inputs. 
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Add
gfortran:lib.
 2016-05-25 21:49:08 +03:00
Efraim Flashner
68bf2f9d6b
gnu: enlightenment: Update to 0.20.8. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.8.
 2016-05-25 20:52:25 +03:00
Efraim Flashner
fac5065b8f
gnu: elementary: Update to 1.17.1. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.17.1.
 2016-05-25 20:51:48 +03:00
Efraim Flashner
cda20b86cf
gnu: efl: Update to 1.17.1. 
* gnu/packages/enlightenment.scm (efl): Update to 1.17.1.
 2016-05-25 20:51:48 +03:00
Leo Famulari
10240c7cbe
gnu: python-llfuse: Update to 1.1. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.1.
 2016-05-25 11:50:20 -04:00
Leo Famulari
0e9bc883b4
gnu: fuse: Update to 2.9.6. 
* gnu/packages/linux.scm (fuse): Update to 2.9.6.
[home-page]: Update home-page URL.
 2016-05-25 11:50:20 -04:00
Leo Famulari
c99bf9b2ea
gnu: dnsmasq: Update to 2.76 [fixes CVE-2015-3294]. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.76.
 2016-05-25 11:47:51 -04:00
Ben Woodcroft
803bcc81e2 gnu: ruby-mime-types: Update to 3.1. 
* gnu/packages/ruby.scm (ruby-mime-types): Update to 3.1.
[native-inputs]: Add 'ruby-minitest-hooks'.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
2a96dbe6d6 gnu: Add ruby-minitest-hooks. 
* gnu/packages/ruby.scm (ruby-minitest-hooks): New variable.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
cbdd428cf4 gnu: Add ruby-sequel. 
* gnu/packages/ruby.scm (ruby-sequel): New variable.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
f1ae7c6218 gnu: ruby-nokogumbo: Update to 1.4.7-1. 
* gnu/packages/ruby.scm (ruby-nokogumbo): Update to 1.4.7-1.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
59884b71e3 gnu: ruby-mini-portile-2: Update to 2.1.0. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): Update to 2.1.0.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
0907bf571d gnu: ruby-mime-types-data: Update to 3.2016.0221. 
* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0221.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
80756fa66b gnu: ruby-shoulda-matchers: Update to 3.1.1. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.1.
[arguments]: Remove 'fix-import' phase.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
33a45ed652 gnu: ruby-domain-name: Update to 0.5.20160310. 
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160310.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft
5e7f1b0b2a gnu: ruby-nokogiri: Update to 1.6.7.2. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.6.7.2.
[arguments]: Relax 'mini_portile2' dependency.
 2016-05-25 22:34:29 +10:00
Mark H Weaver
2301195f2e
gnu: linux-libre: Update to 4.6. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: New files.
* gnu/packages/linux-libre-4.5-x86_64.conf,
gnu/packages/linux-libre-4.5-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
 2016-05-25 04:54:06 -04:00
Mark H Weaver
92a7e46d58
gnu: python-libxml2: Drop replacement from inherited libxml2. 
This is a followup to commit 493e9a5a8f.

* gnu/packages/xml.scm (python-libxml2)[replacement]: Set to #f, overriding
inherited value.
 2016-05-25 04:54:06 -04:00
Efraim Flashner
19d6248634
gnu: freeipmi: Update to 1.5.2. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.2.
 2016-05-25 09:13:13 +03:00
Mark H Weaver
796787a577
gnu: linux-libre-4.1: Update to 4.1.25. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.25.
 2016-05-25 00:26:40 -04:00
Mark H Weaver
6f82a7d40d
gnu: webkitgtk: Update to 2.12.3 [fixes CVE-2016-{1856,1857}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.3.
 2016-05-25 00:14:32 -04:00
Ludovic Courtès
493e9a5a8f
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705. 
* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
 2016-05-24 14:15:18 +02:00
Mathieu Lirzin
c0d2e7b197
build: Use "%D%" in Makefile fragments. 
* doc/local.mk: Use "%D%" for the directory of the fragment relative to
the base 'Makefile.am'.
* emacs/local.mk: Likewise.
* gnu/local.mk: Likewise.
* nix/local.mk: Likewise.
 2016-05-24 13:07:19 +02:00
humanitiesNerd
8eeb301de2
gnu: Add emacs-clojure-mode. 
* gnu/packages/emacs.scm (emacs-clojure-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-24 11:32:42 +03:00
Alex Kost
b8fc362239
gnu: Use 'emacs-minimal' instead of 'emacs-no-x'. 
* gnu/packages/code.scm (cflow)[native-inputs]: Use 'emacs-minimal'
  instead of 'emacs-no-x'.
* gnu/packages/databases.scm (recutils): Likewise.
* gnu/packages/finance.scm (ledger): Likewise
* gnu/packages/idutils.scm (idutils): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/ocaml.scm (proof-general): Likewise.
* gnu/packages/package-management.scm (guix-0.10.0): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/scheme.scm (scmutils): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
* gnu/packages/emacs.scm (geiser): Likewise.
(paredit): Likewise.
(git-modes): Likewise.
(magit): Likewise.
(magit-svn): Likewise.
(haskell-mode): Likewise.
(let-alist): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
(emms): Likewise.
(bbdb): Likewise.
(emacs-mmm-mode): Likewise.
(emacs-pdf-tools): Likewise.
(emacs-popup)[native-inputs]: Remove as it is not needed for
emacs-build-system.
(emacs-rfcview): Likewise.
(emacs-ffap-rfc-space): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost
6aaf38992c
gnu: Move emacs for building from inputs to native-inputs. 
* gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs.
(paredit): Likewise.
(haskell-mode): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost
a6eafbed66
build-system/emacs: Use 'emacs-minimal' by default. 
* guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'.
* gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.
 2016-05-24 11:32:27 +03:00
Alex Kost
b2eaf7bacd
gnu: Add emacs-minimal. 
* gnu/packages/emacs.scm (emacs-minimal): New variable.
 2016-05-24 11:32:27 +03:00
Alex Kost
486f36eb9e
gnu: emacs: Remove *.elc and autoloads from the tarball. 
* gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove
  compiled and generated elisp files.
 2016-05-24 11:11:26 +03:00
Efraim Flashner
d16479c51e
gnu: enblend-enfuse: Update to 4.2. 
* gnu/packages/photo.scm (enblend-enfuse): Update to 4.2.
[native-inputs]: Add help2man, texlive-minimal.
 2016-05-24 08:49:23 +03:00
Leo Famulari
7febe3a282
gnu: grub: Re-enable test. 
* gnu/packages/grub.scm (grub)[arguments]: Re-enable test.
 2016-05-23 18:47:45 -04:00
Leo Famulari
88ac650c7b
gnu: vdirsyncer: Update to 0.11.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
 2016-05-23 13:26:17 -04:00
Leo Famulari
e1343994b0
gnu: git: Update to 2.8.3. 
* gnu/packages/version-control.scm (git): Update to 2.8.3.
(git-manpages)[source]: Update hash.
 2016-05-23 13:14:50 -04:00
Roel Janssen
031cf6b65e
gnu: Add r-zoo. 
* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-23 12:36:38 -04:00
Leo Famulari
148e8e8e75
gnu: borg: Update to 1.0.3. 
* gnu/packages/backup.scm (borg): Update to 1.0.3.
[source]: Remove pypi-uri.
 2016-05-23 12:27:12 -04:00
Roel Janssen
f22debacb4
gnu: Add poppler-qt5. 
* gnu/packages/pdf.scm (poppler-qt5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-23 14:35:23 +03:00
Ricardo Wurmus
524eee0298 gnu: Add slurm-drmaa. 
* gnu/packages/parallel.scm (slurm-drmaa): New variable.
 2016-05-23 12:55:40 +02:00
Ricardo Wurmus
0783787436 gnu: Add ParDRe. 
* gnu/packages/bioinformatics.scm (pardre): New variable.
 2016-05-23 12:55:09 +02:00
Efraim Flashner
624d4e2e6b
gnu: gnu-pw-mgr: Update to 2.0. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
 2016-05-22 16:58:21 +03:00
Leo Famulari
13913c52d5
gnu: imagemagick: Update to 6.9.4-4. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
 2016-05-22 03:51:57 -04:00
Lukas Gradl
88bb4197c4 gnu: Add python2-rope. 
* gnu/packages/python.scm (python2-rope): New variable.
 2016-05-22 14:19:52 +10:00
Kei Yamashita
3c47489766
gnu: Add gnome-calendar. 
* gnu/packages/gnome.scm (gnome-calendar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Matthew Jordan
548994142f
gnu: Add envstore. 
* gnu/package/shellutils.scm: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Jan Nieuwenhuizen
b9b447be64
gnu: Add sicp. 
* gnu/packages/scheme.scm (sicp): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Roel Janssen
a56be436d0
gnu: Add dia. 
* gnu/packages/gnome.scm (dia): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Mark H Weaver
3c9a7185e4
gnu: linux-libre: Update to 4.5.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
 2016-05-20 18:58:15 -04:00
Mark H Weaver
4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
 2016-05-20 18:58:06 -04:00
Ricardo Wurmus
987a118334
gnu: Add default gcc-objc++. 
* gnu/packages/gcc.scm (gcc-objc++): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus
a5948c0d41
gnu: Add gcc-objc++-4.9. 
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus
8b196ad208
gnu: Add default gcc-objc. 
* gnu/packages/gcc.scm (gcc-objc): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus
2d69c1616d
gnu: Add gcc-objc-4.9. 
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
 2016-05-20 15:19:33 +02:00
Ricardo Wurmus
813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
945eef85c5
gnu: armadillo: Update to 6.700.7. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
7740f58128
gnu: r-genomation: Update to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
f6225d135c
gnu: r-jsonlite: Update to 0.9.20. 
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
c969453e1c
gnu: r-plotly: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
95513f284f
gnu: r-matrixstats: Update to 0.50.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
2f7ac060ff
gnu: r-plotrix: Update to 3.6-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
133f27b06a
gnu: r-devtools: Update to 1.11.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
3624ad7150
gnu: r-git2r: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
c1e2c9d41a
gnu: r-openssl: Update to 0.9.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
383f6337a0
gnu: r-testthat: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
1b206aeb00
gnu: r-knitr: Update to 1.13. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
d5130e6345
gnu: r-highr: Update to 0.6. 
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
df25b0048a
gnu: r-formatr: Update to 1.4. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
84e5368719
gnu: r-evaluate: Update to 0.9. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
a76b3f6914
gnu: r-dbi: Update to 0.4-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
d7420566a9
gnu: r-biocparallel: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
73af676feb
gnu: r-annotationdbi: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
679e670b36
gnu: r-variantannotation: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus
186ed87337
gnu: r-genomeinfodb: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
 2016-05-20 15:18:23 +02:00
Leo Famulari
0fc4a8afba
gnu: btrfs-progs: Update to 4.5.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
 2016-05-19 21:04:22 -04:00
Jelle Licht
0e40755d35
gnu: jemalloc: Update to 4.2.0. 
* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 20:43:13 +03:00
Leo Famulari
119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
 2016-05-19 10:27:18 -04:00
Ludovic Courtès
9684e30b9b
gnu: flann: Do not install .a files. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
 2016-05-19 14:51:21 +02:00