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Author SHA1 Message Date
Ludovic Courtès
3d43017026
tests: Adjust 'add-file-tree-to-store' test for lack of /bin/sh. 
* tests/store.scm (%shell): New variable.
("add-file-tree-to-store"): Use it instead of "/bin/sh".  This fixes
builds in the chroot build environment.
 2018-09-05 13:59:10 +02:00
Ludovic Courtès
185948b8a8
gnu: xorg: Fix typo. 
* gnu/packages/xorg.scm: Fix typo in Benjamin's email address.
 2018-09-05 13:57:43 +02:00
Ludovic Courtès
030f1367f0
channels: Add 'latest-channel-derivation' convenience procedure. 
* guix/channels.scm (latest-channel-derivations): Remove.
(latest-channel-instances*, latest-channel-derivation): New procedures.
 2018-09-05 12:01:48 +02:00
Ricardo Wurmus
4fd2622df8
gnu: python-tables: Update to 3.4.4. 
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
 2018-09-05 12:01:23 +02:00
Ricardo Wurmus
8afdeb8751
gnu: python-pybigwig: Update to 0.3.12. 
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.12.
[propagated-inputs]: Add python-numpy.
 2018-09-05 12:01:23 +02:00
Ricardo Wurmus
0d7974c376
gnu: libbigwig: Update to 0.4.2. 
* gnu/packages/bioinformatics.scm (libbigwig): Update to 0.4.2.
[source]: Fetch from git.
[arguments]: Disable tests; remove build phases "disable-curl-test" and
"create-target-dirs".
[native-inputs]: Add python-2.
 2018-09-05 12:01:23 +02:00
Ricardo Wurmus
ca1dc4c76a
gnu: nss-pam-ldapd: Update to 0.9.10. 
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.10.
 2018-09-05 11:44:52 +02:00
Rutger Helling
fefe17b088
gnu: dolphin-emu: Update to commit 5f0d825. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 5f0d825.
 2018-09-05 10:23:20 +02:00
Leo Famulari
fcf4841c0e
gnu: Zsh: Patch some tests that began failing in 5.6. 
* gnu/packages/shells.scm (zsh)[arguments]: Patch the tests rather than deleting
them.
 2018-09-04 18:34:01 -04:00
Leo Famulari
95681e5586
gnu: Zsh: Update to 5.6 [fixes CVE-2018-{0502,13259}]. 
* gnu/packages/shells.scm (zsh): Update to 5.6.
[arguments]: Skip some tests.
 2018-09-04 18:10:53 -04:00
Ludovic Courtès
ca71942445
Switch to Guile-Gcrypt. 
This removes (guix hash) and (guix pk-crypto), which now live as part of
Guile-Gcrypt (version 0.1.0.)

* guix/gcrypt.scm, guix/hash.scm, guix/pk-crypto.scm,
tests/hash.scm, tests/pk-crypto.scm: Remove.
* configure.ac: Test for Guile-Gcrypt.  Remove LIBGCRYPT and
LIBGCRYPT_LIBDIR assignments.
* m4/guix.m4 (GUIX_ASSERT_LIBGCRYPT_USABLE): Remove.
* README: Add Guile-Gcrypt to the dependencies; move libgcrypt as
"required unless --disable-daemon".
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/bash.scm, guix/derivations.scm, guix/docker.scm,
guix/git.scm, guix/http-client.scm, guix/import/cpan.scm,
guix/import/cran.scm, guix/import/crate.scm, guix/import/elpa.scm,
guix/import/gnu.scm, guix/import/hackage.scm,
guix/import/texlive.scm, guix/import/utils.scm, guix/nar.scm,
guix/pki.scm, guix/scripts/archive.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/scripts/pack.scm,
guix/scripts/publish.scm, guix/scripts/refresh.scm,
guix/scripts/substitute.scm, guix/store.scm,
guix/store/deduplication.scm, guix/tests.scm, tests/base32.scm,
tests/builders.scm, tests/challenge.scm, tests/cpan.scm,
tests/crate.scm, tests/derivations.scm, tests/gem.scm,
tests/nar.scm, tests/opam.scm, tests/pki.scm,
tests/publish.scm, tests/pypi.scm, tests/store-deduplication.scm,
tests/store.scm, tests/substitute.scm: Adjust imports.
* gnu/system/vm.scm: Likewise.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this.  Add GUILE-GCRYPT.
(expression->derivation-in-linux-vm)[config]: Remove.
(iso9660-image)[config]: Remove.
(qemu-image)[config]: Remove.
(system-docker-image)[config]: Remove.
* guix/scripts/pack.scm: Adjust imports.
(guile-sqlite3&co): Rename to...
(gcrypt-sqlite3&co): ... this.  Add GUILE-GCRYPT.
(self-contained-tarball)[build]: Call 'make-config.scm' without
 #:libgcrypt argument.
(squashfs-image)[libgcrypt]: Remove.
[build]: Call 'make-config.scm' without #:libgcrypt.
(docker-image)[config, json]: Remove.
[build]: Add GUILE-GCRYPT to the extensions  Remove (guix config) from
the imported modules.
* guix/self.scm (specification->package): Remove "libgcrypt", add
"guile-gcrypt".
(compiled-guix): Remove #:libgcrypt.
[guile-gcrypt]: New variable.
[dependencies]: Add it.
[*core-modules*]: Remove #:libgcrypt from 'make-config.scm' call.
Add #:extensions.
[*config*]: Remove #:libgcrypt from 'make-config.scm' call.
(%dependency-variables): Remove %libgcrypt.
(make-config.scm): Remove #:libgcrypt.
* build-aux/build-self.scm (guile-gcrypt): New variable.
(make-config.scm): Remove #:libgcrypt.
(build-program)[fake-gcrypt-hash]: New variable.
Add (gcrypt hash) to the imported modules.  Adjust load path
assignments.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, add GUILE-GCRYPT to the search
path.
 2018-09-04 17:25:11 +02:00
Ludovic Courtès
7e1d229019
inferior: Add home-page and location package accessors. 
* guix/inferior.scm (inferior-package-home-page)
(inferior-package-location): New procedures.
* tests/inferior.scm ("inferior-packages"): Test them.
 2018-09-04 17:22:55 +02:00
Alex Vong
1bf758767d
gnu: Add emacs-picpocket. 
* gnu/packages/emacs.scm (emacs-picpocket): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-04 15:39:43 +02:00
Paul Garlick
71ca16b58d
gnu: petsc-openmpi: Configure with support for hdf5 data format. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags.  Add 'set-test-environment' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-04 15:22:48 +02:00
Jonathan Brielmaier
b50658fe8a
gnu: kicad: Update to 5.0.0. 
* gnu/packages/engineering.scm (kicad): Update to 5.0.0.
[source]: Change from git to url-fetch.
[arguments]: Remove now unneeded build version parameter.
[inputs]: Add opencascade-oce.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-04 15:02:59 +02:00
Arun Isaac
906a396bff
gnu: ghc-zlib: Enable tests. 
* gnu/packages/haskell.scm (ghc-zlib)[arguments]: Enable tests. Allow building
with newer tasty.
[native-inputs]: Add ghc-quickcheck, ghc-tasty, ghc-tasty-hunit and
ghc-tasty-quickcheck.
 2018-09-04 17:31:09 +05:30
Arun Isaac
6300ba5b66
gnu: ghc-integer-logarithms: Allow building with newer tasty. 
* gnu/packages/haskell.scm (ghc-integer-logarithms)[arguments]: Allow building
with newer tasty.
 2018-09-04 15:24:32 +05:30
Arun Isaac
8374cc4b05
gnu: ghc-tasty-ant-xml: Update to 1.1.4. 
* gnu/packages/haskell-check.scm (ghc-tasty-ant-xml): Update to 1.1.4.
 2018-09-04 15:21:56 +05:30
Arun Isaac
3ad6b89090
gnu: ghc-tasty: Update to 1.1.0.3. 
* gnu/packages/haskell-check.scm (ghc-tasty): Update to 1.1.0.3.
[inputs]: Add ghc-wcwidth.
(ghc-attoparsec-bootstrap, ghc-integer-logarithms-bootstrap,
ghc-scientific-bootstrap): New variables.
(ghc-wcwidth)[inputs]: Replace ghc-attoparsec with ghc-attoparsec-bootstrap.
(ghc-scientific)[inputs]: Replace ghc-integer-logarithms with
ghc-integer-logarithms-bootstrap.
(ghc-attoparsec)[inputs]: Replace ghc-scientific with
ghc-scientific-bootstrap.
 2018-09-04 12:15:17 +05:30
Arun Isaac
9c4b522f15
gnu: Add ghc-wcwidth. 
* gnu/packages/haskell.scm (ghc-wcwidth): New variable.
 2018-09-04 12:15:10 +05:30
Ludovic Courtès
fd95f37f36
Revert "gnu: perl: Add support for cross-compilation" 
This reverts commit 5108c18e7e, which was
accidentally committed.
 2018-09-03 23:49:12 +02:00
Raphaël Mélotte
5108c18e7e
gnu: perl: Add support for cross-compilation 
* gnu/packages/perl.scm (perl): use cross-libc when cross-compiling

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-03 23:41:08 +02:00
Benjamin Slade
38fe6449c0
gnu: Add transset-df. 
* gnu/packages/xorg.scm (transset-df): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-03 23:40:23 +02:00
Marius Bakke
c702749dfd
gnu: arpack-ng: Update to 3.6.2. 
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
 2018-09-03 19:09:01 +02:00
Marius Bakke
91bb495b85
gnu: arpack-ng: Drop redundant phase. 
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
 2018-09-03 19:09:01 +02:00
Marius Bakke
1f7d142000
gnu: python-matplotlib: Update to 2.2.3. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
 2018-09-03 19:09:00 +02:00
Marius Bakke
cbd7c65709
gnu: ppp: Return #t from all phases. 
* gnu/packages/samba.scm (ppp)[arguments]: Return #t from phase.
 2018-09-03 18:58:47 +02:00
Marius Bakke
84aa18ff7f
gnu: re2: Update to 2018-09-01. 
* gnu/packages/regex.scm (re2): Update to 2018-09-01.
 2018-09-03 18:58:47 +02:00
Marius Bakke
fcde1d27bb
gnu: openexr: Update to 2.3.0. 
* gnu/packages/graphics.scm (openexr): Update to 2.3.0.
[source](uri): Change to new download location.
[source](snippet): Remove workaround.
[source](patches): Remove.
* gnu/packages/patches/openexr-missing-samples.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-09-03 18:58:47 +02:00
Marius Bakke
1ae2c577a6
gnu: ilmbase: Update to 2.3.0. 
* gnu/packages/graphics.scm (ilmbase): Update to 2.3.0.
[source](uri): Change to new download location.
 2018-09-03 18:58:46 +02:00
Marius Bakke
9156206199
gnu: simplescreenrecorder: Build against modular Qt. 
* gnu/packages/video.scm (simplescreenrecorder)[inputs]: Remove QT.  Add
QTBASE and QTX11EXTRAS.
 2018-09-03 18:58:46 +02:00
Marius Bakke
65e686d6cb
Merge branch 'security-updates' 2018-09-03 18:58:20 +02:00
Efraim Flashner
a5896da34e
gnu: gnu-pw-mgr: Update to 2.4.2. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.4.2.
 2018-09-03 19:34:24 +03:00
Tobias Geerinckx-Rice
38a8cd329d
gnu: python-nbxmpp: Update to 0.6.7. 
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.7.
 2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice
b619b7f67b
gnu: libircclient: Update to 1.10. 
* gnu/packages/messaging.scm (libircclient): Update to 1.10.
 2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice
cfcfc6ab62
Fix some typos. 
* doc/guix.texi (Sound Services, DNS Services): Fix typos.
* gnu/packages/cpp.scm (json-modern-cxx)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-fancy-narrow)[synopsis, description]:
Likewise. Edit & mark up while we're here.
* gnu/packages/mail.scm (alot)[synopsis, description]: Ditto.
 2018-09-03 18:21:43 +02:00
Tobias Geerinckx-Rice
fb458bf3bc
gnu: sudo: Update to 1.8.25. 
* gnu/packages/admin.scm (sudo): Update to 1.8.25.
 2018-09-03 18:21:42 +02:00
Efraim Flashner
0cc6447669
gnu: python-efl: Update to 1.21.0. 
* gnu/packages/enlightenment.scm (python-efl): Update to 1.21.0.
[source]: Don't use pypi source.
[arguments]: Delete network tests.
 2018-09-03 17:32:44 +03:00
Efraim Flashner
290bef39f6
gnu: efl: Update to 1.21.0. 
* gnu/packages/enlightenment.scm (efl): Update to 1.21.0.
 2018-09-03 17:32:44 +03:00
Ricardo Wurmus
02ddafef55
gnu: python-scipy: Disable broken tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
 2018-09-03 13:49:32 +02:00
Rutger Helling
26baaaf49b
gnu: c-toxcore: Update to 0.2.7. 
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.7.
 2018-09-03 08:22:51 +02:00
Rutger Helling
aa613d71ec
gnu: openrct2: Update to 0.2.1. 
* gnu/packages/games.scm (openrct2-objects): Update to 1.0.6.
* gnu/packages/games.scm (openrct2): Update to 0.2.1.
 2018-09-03 08:22:50 +02:00
Efraim Flashner
647465ace9
gnu: jellyfish: Update to 2.2.10. 
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.10.
[supported-systems]: Add aarch64-linux, mips64el-linux.
 2018-09-03 08:32:33 +03:00
Oleg Pykhalov
3910977823
gnu: monitoring.scm: Fix copyright line. 
This is a follow-up to ead46692ec.
 2018-09-02 19:18:16 +03:00
Alex Vong
2bd6ed9e4c
gnu: haskell-mode: Fix test failure. 
Fixes <https://bugs.gnu.org/31726>.

Thanks to Jack Hill <jackhill@jackhill.us> for exploring different solutions
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31726>.

* gnu/packages/patches/haskell-mode-unused-variables.patch,
gnu/packages/patches/haskell-mode-make-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/emacs.scm (haskell-mode)[source]: Use them.
[arguments]: Adjust 'pre-build' phase to embed file name.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-02 17:06:43 +02:00
Konrad Hinsen
b21a55a9f2
gnu: emacs-helpful: Update to 0.13. 
* gnu/packages/emacs.scm (emacs-helpful): Update to 0.13.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-02 16:58:06 +02:00
Konrad Hinsen
351b6463af
gnu: emacs-elisp-refs: Update to 1.3. 
* gnu/packages/emacs.scm (emacs-elisp-refs): Update to 1.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-02 16:56:22 +02:00
Ludovic Courtès
0d39a3b989
Add (guix channels) and use it in (guix scripts pull). 
* guix/channels.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/pull.scm: Use it.
(%default-options): Remove 'repository-url' and 'ref'.
(show-help, %options): Add '--channels'.
(%self-build-file, %pull-version, build-from-source)
(whole-package-for-legacy, derivation->manifest-entry): Remove.  These
now exist in a similar form in (guix channels).
(build-and-install): Change 'source' to 'instances'.  Remove #:url,
 #:branch, and #:commit.  Rewrite using 'channel-instances->manifest'.
(channel-list): New procedure.
(guix-pull): Parameterize %REPOSITORY-CACHE-DIRECTORY.  Call
'honor-lets-encrypt-certificates!' unconditionally.  Load
~/.config/guix/channels.scm.  Rewrite to use (guix channels).
[use-le-certs?]: Remove.
* po/guix/POTFILES.in: Add (guix channels).
* doc/guix.texi (Invoking guix pull): Group the description of '--url',
'--commit', and '--branch'.  Remove mention of 'GUIX_PULL_URL'.  Add
references to "Channels".  Document '--channels'.
(Channels): New node.
(Defining Packages): Link to "Channels" instead of "Package Modules".
(Invoking guix edit): Link to "Package Modules" instead of "Defining
Packages".
(Package Modules): Document both GUIX_PACKAGE_PATH and channels.
 2018-09-02 16:51:40 +02:00
Ludovic Courtès
fe634eaf93
Add (guix describe) and use it to initialize '%package-search-path'. 
* guix/describe.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm (%default-package-module-path): New variable.
(%package-module-path): Honor 'package-path-entries'.
* build-aux/update-NEWS.scm (main): Use %DEFAULT-PACKAGE-MODULE-PATH
instead of (last (%package-module-path)).
 2018-09-02 16:43:10 +02:00
Ludovic Courtès
02fa1d251c
discovery: Add 'scheme-modules*'. 
* guix/self.scm (scheme-modules*): Move to...
* guix/discovery.scm (scheme-modules*): ... here.  New procedure.  Make
'sub-directory' an optional parameter.
 2018-09-02 16:43:10 +02:00