ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-11-18 04:37:36 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions
71431 commits 1 branch 0 tags 448 MiB
Commit graph

71431 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
6279d2b6dd
gnu: Add r-rainbow. 
* gnu/packages/cran.scm (r-rainbow): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
14caba7eeb
gnu: Add r-hdrcde. 
* gnu/packages/cran.scm (r-hdrcde): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
feb7c4f6ca
gnu: Add r-ash. 
* gnu/packages/cran.scm (r-ash): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
73545fde42
gnu: Add r-parallelly. 
* gnu/packages/cran.scm (r-parallelly): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
9c3f5b2fa0
gnu: Add r-gitcreds. 
* gnu/packages/cran.scm (r-gitcreds): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
71a732c35d
gnu: Add r-waldo. 
* gnu/packages/cran.scm (r-waldo): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
24cf213edb
gnu: Add r-diffobj. 
* gnu/packages/cran.scm (r-diffobj): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus
bd5f751259
gnu: Add r-brio. 
* gnu/packages/cran.scm (r-brio): New variable.
 2020-12-09 22:03:26 +01:00
Leo Famulari
eaca440b65
gnu: python-llfuse: Update to 1.3.8. 
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
 2020-12-09 15:41:25 -05:00
Eric Bavier
2a23e3f582
gnu: dealii: Update to 9.2.0. 
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
 2020-12-09 13:42:05 -06:00
Eric Brown
e36291ef52
gnu: Add r-restrserve. 
* gnu/packages/cran.scm (r-restrserve): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-09 19:33:35 +00:00
Pierre Neidhardt
5f6a001933
gnu: Add kiwix-desktop. 
* gnu/packages/web.scm (kiwix-desktop): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt
acbf47a067
gnu: Add kiwix-lib. 
* gnu/packages/web.scm (kiwix-lib): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt
44308c8c5f
gnu: Add libzim. 
* gnu/packages/web.scm (libzim): New variable.
 2020-12-09 18:24:46 +01:00
Pierre Neidhardt
a294eecd98
gnu: Add emacs-helm-switch-to-repl. 
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
 2020-12-09 17:27:51 +01:00
Nicolas Goaziou
5103459664
gnu: emacs-debbugs: Update to 0.27. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
 2020-12-09 14:54:27 +01:00
Ludovic Courtès
3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd. 
* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
 2020-12-09 14:13:33 +01:00
Ludovic Courtès
69a0440a02
doc: Document 'advertise?' for 'guix-publish-configuration'. 
* doc/guix.texi (Base Services): Document the 'advertise?' field of
'guix-publish-configuration'.
 2020-12-09 14:13:33 +01:00
Ludovic Courtès
f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed. 
* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'.  When ADVERTISE? is true, also add
'avahi-daemon'.
 2020-12-09 14:13:32 +01:00
Ludovic Courtès
59a6780f70
services: avahi: Depend on 'user-processes'. 
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
 2020-12-09 14:13:32 +01:00
Ricardo Wurmus
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus
4617cc7fd5
gnu: r-rhtslib: Propagate zlib. 
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:48 +01:00
zimoun
cde035e67f
gnu: r-gqtlstats: Update to 1.21.3. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
 2020-12-09 12:12:48 +01:00
zimoun
6a4818716d
gnu: r-gqtlbase: Update to 1.21.1. 
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
 2020-12-09 12:12:48 +01:00
zimoun
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
 2020-12-09 12:12:48 +01:00
zimoun
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
 2020-12-09 12:12:47 +01:00
zimoun
8db36c1f68
gnu: r-yarn: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
 2020-12-09 12:12:47 +01:00
zimoun
adf6edc750
gnu: r-quantro: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
 2020-12-09 12:12:47 +01:00
zimoun
4eeaa159d2
gnu: r-lumi: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
 2020-12-09 12:12:47 +01:00
zimoun
0b7dd44706
gnu: r-methylumi: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
 2020-12-09 12:12:47 +01:00
zimoun
e5a4198bc3
gnu: r-minfi: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
 2020-12-09 12:12:47 +01:00
zimoun
45dfb75166
gnu: Add r-catalyst. 
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
 2020-12-09 12:12:47 +01:00
zimoun
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
 2020-12-09 12:12:47 +01:00
zimoun
b856a48768
gnu: r-scdd: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
 2020-12-09 12:12:47 +01:00
zimoun
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
 2020-12-09 12:12:47 +01:00
zimoun
1174317e03
gnu: r-pcatools: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
 2020-12-09 12:12:47 +01:00
zimoun
970984237a
gnu: r-biocviews: Update to 1.58.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:47 +01:00
zimoun
b03c955c6f
gnu: r-scran: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle.  Remove r-iranges.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:47 +01:00
zimoun
d4b5d18684
gnu: r-scater: Update to 1.18.3. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle.  Remove r-beachmat, r-rcpp.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus
0e60dda0ae
gnu: Add r-scuttle. 
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
 2020-12-09 12:12:46 +01:00
zimoun
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2020-12-09 12:12:46 +01:00
zimoun
53affb349a
gnu: r-rhdf5: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.

Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
 2020-12-09 12:12:46 +01:00
Ricardo Wurmus
86fcceeae1
gnu: Add r-rhdf5filters. 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable.
 2020-12-09 12:12:46 +01:00
zimoun
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
 2020-12-09 12:12:46 +01:00
zimoun
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
 2020-12-09 12:12:46 +01:00
zimoun
798ec28916
gnu: r-biocsingular: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
 2020-12-09 12:12:46 +01:00
zimoun
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
 2020-12-09 12:12:46 +01:00
zimoun
35dae95110
gnu: r-interactionset: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
 2020-12-09 12:12:46 +01:00
zimoun
60ad3c7b3b
gnu: r-genomationdata: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0.
 2020-12-09 12:12:46 +01:00