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Author SHA1 Message Date
Ludovic Courtès
fe55ae488b
gnu: python-petsc4py: Update to 3.16.1. 
This is a followup to 07ac13a26a.

* gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
 2021-12-08 22:59:44 +01:00
Ludovic Courtès
3b8825421b
gnu: geeqie: Fix X11 error at startup. 
Fixes <https://issues.guix.gnu.org/52089>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
Patch provided by John Kehayias <john.kehayias@protonmail.com>.

* gnu/packages/patches/geeqie-clutter.patch: New file.
* gnu/packages/image-viewers.scm (geeqie)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-08 22:35:03 +01:00
Tobias Geerinckx-Rice
f3af1fb0bc
bash completion: Complete ‘guix shell -f’. 
* etc/completion/bash/guix (_guix_complete): Suggest a file name
following ‘guix shell […] -f’.
 2021-12-08 21:09:55 +01:00
Petr Hodina
0ba4e94e84
gnu: Add realmd. 
* gnu/packages/admin.scm (realmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 14:26:39 -05:00
Sarah Morgensen
8ac2d303e4
gnu: go-github-com-alcortesm-tgz: Don't reset gzip timestamps. 
The tgz files are committed test fixtures, so don't reset their timestamps.

* gnu/packages/golang.scm (go-github-com-alcortesm-tgz)[arguments]:
Remove 'make-git-checkout-writable' phase.  Delete 'reset-gzip-timestamps' phase
instead.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 13:35:34 -05:00
Sarah Morgensen
93c7a5103d
gnu: Remove go-gopkg.in-check.v1. 
This package is a duplicate of go-gopkg-in-check-v1 in golang.scm,
has no binaries, and has no dependents, so remove it.

* gnu/packages/check.scm (go-gopkg.in-check.v1): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-08 13:35:34 -05:00
Ludovic Courtès
77c8382bb6
gnu: mumps: Allow compilation with GCC 10. 
Following the suggestion at
<https://community.freefem.org/t/compline-on-macos-10-15-6/543>.

* gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add
'-fallow-argument-mismatch' to 'OPTF'.
 2021-12-08 18:56:53 +01:00
Ludovic Courtès
3867cb7885
maint: Don't require unsupported packages such as GNOME on i686-linux. 
* etc/release-manifest.scm (%system-manifest): Filter out PACKAGE when
it doesn't pass 'supported-package?'.
 2021-12-08 18:56:52 +01:00
Ludovic Courtès
49599fab56
services: %desktop-services: Use SDDM rather than GDM on non-x86_64. 
This works around the fact that Rust is currently unavailable in Guix on
platforms other than x86_64-linux:

  https://lists.gnu.org/archive/html/guix-devel/2021-11/msg00197.html

* gnu/services/desktop.scm (desktop-services-for-system): New
procedure.
(%desktop-services): Turn into a macro.
 2021-12-08 18:56:52 +01:00
Ludovic Courtès
24ead149db
system: Mark 'services' field as thunked. 
This allows us to make services dependent on (%current-system), for
example.

* gnu/system.scm (<operating-system>)[services]: Mark as thunked.
 2021-12-08 18:56:47 +01:00
Ludovic Courtès
20e6446a68
gnu: idutils: Fix build with glibc 2.33. 
* gnu/packages/idutils.scm (idutils)[source]: Remove reference to 'gets'
from "lib/stdio.in.h".
 2021-12-08 18:55:58 +01:00
Tobias Geerinckx-Rice
9bac41c2b8
gnu: fzf: Wrap with a compliant find(1). 
* gnu/packages/terminals.scm (fzf)[inputs]: Add findutils.
[arguments]: Wrap the ‘fzf’ executable with its /bin directory in $PATH.

Addresses <https://issues.guix.gnu.org/52372>.
 2021-12-08 18:13:48 +01:00
Efraim Flashner
a59abcb350
gnu: libtorrent-rasterbar: Build with default cmake. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Remove
cmake flag.
 2021-12-08 17:36:35 +02:00
Ricardo Wurmus
00ae87c41a
gnu: tadbit: Update to 1.0.1-1.5c4c1dd. 
* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-1.5c4c1dd.
[arguments]: Remove trailing #T from build phases; pass -fcommon to test
binaries; run tests conditionally.
 2021-12-08 16:32:37 +01:00
Ricardo Wurmus
7f4d25f86e
gnu: python2-sphinx: Remove websupport test. 
* gnu/packages/sphinx.scm (python2-sphinx)[arguments]: Remove websupport test
file.
 2021-12-08 16:13:08 +01:00
Ricardo Wurmus
68619cad28
gnu: python2-sphinxcontrib-websupport: Downgrade to 1.1.2. 
* gnu/packages/sphinx.scm (python2-sphinxcontrib-websupport): Downgrade to
1.1.2.
[arguments]: Override; delete 'sanity-check phase.
[propagated-inputs]: Override and add python2-six.
(python-sphinxcontrib-websupport)[properties]: Record python2-variant.
 2021-12-08 16:13:08 +01:00
Ricardo Wurmus
a4a7c78f68
gnu: python2-jinja2: Downgrade to 2.11.3 
* gnu/packages/python-xyz.scm (python2-jinja2): Downgrade to the last version
supporting Python 2.
(python-jinja2)[properties]: Record python2-variant.
 2021-12-08 16:13:08 +01:00
Tobias Geerinckx-Rice
852ad65bd4
gnu: fastboot: Fix ‘--version’ output. 
* gnu/packages/android.scm (fastboot)[arguments]: Replace broken
‘git rev-parse’ shell command with the actual package VERSION.

Reported by kwjc on #guix.
 2021-12-08 15:42:33 +01:00
Zhu Zihao
5573d98f81
gnu: rtl8821ce-linux-module: Update to 0.0.0-4-ca204c6. 
Fixes compatibility with linux-libre@5.15:

  […]/source/core/rtw_br_ext.c:20:11: fatal error: net/ipx.h:
  No such file or directory
    #include <net/ipx.h>
             ^~~~~~~~~~~
  compilation terminated.

* gnu/packages/linux.scm (rtl8821ce-linux-module):
Update to 0.0.0-4-ca204c6.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-12-08 15:42:33 +01:00
Ricardo Wurmus
14ed9b049e
gnu: python2-markupsafe: Downgrade to 1.1.1. 
* gnu/packages/python-xyz.scm (python2-markupsafe): Downgrade to 1.1.1,
because that's the last version to support Python 2.
 2021-12-08 14:43:38 +01:00
Ricardo Wurmus
c8060055de
gnu: ocaml-mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
b835d10d61
gnu: paml: Pass -fcommon to compiler. 
* gnu/packages/bioinformatics.scm (paml)[arguments]: Set CFLAGS.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
2157d82ed3
gnu: paml: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (paml)[arguments]: Remove trailing #T from
build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
76b39f03d2
gnu: sambamba: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (sambamba)[arguments]: Remove trailing #T
from build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
62da1b34d1
gnu: discrover: Add texlive-fonts-ec to inputs. 
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add
texlive-fonts-ec.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
62e196608c
gnu: discrover: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (discrover)[arguments]: Remove trailing #T
from build phases.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
1f63c46a1c
gnu: tbsp: Update to 1.0.0-2.dc30c03. 
* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03.
[arguments]: Relax requirement on matplot.  This may turn out to be a mistake.
[inputs]: Replace python-biopython with python-biopython-1.73.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
1f7c06965c
gnu: mantis: Update to 0.1-2.b6979a2. 
* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2.
[arguments]: Disable the use of SSE4.2 instructions.
[native-inputs]: Build with GCC 7.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
738f22fa06
gnu: imp: Disable tests. 
* gnu/packages/bioinformatics.scm (imp)[arguments]: Disable unreliable test
suite.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
acfbb53222
gnu: snap-aligner: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (snap-aligner): Update to 2.0.0.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
42a7b5215b
gnu: snap-aligner: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T
from 'install phase.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
7c58677a29
gnu: snap-aligner: Run tests conditionally. 
* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS?
option.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
298a8d0b89
gnu: khmer: Cythonize source files. 
* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files.
[arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp
files from Cython sources; add 'build-extensions phase; replace 'check phase.
 2021-12-08 14:31:53 +01:00
Ricardo Wurmus
9a19e8f609
gnu: cwltool: Update to 3.1.20211107152837. 
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837.
[arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T
from build phases; fix /bin/sh invocations in test files.
 2021-12-08 14:31:52 +01:00
Guillaume Le Vaillant
ac53cbb368
gnu: monero: Improve check phase. 
* gnu/packages/finance.scm (monero)[arguments]: Take 'tests?' parameter
  into consideration in 'check' phase.
 2021-12-08 13:31:37 +01:00
Guillaume Le Vaillant
3ccf33bbe6
gnu: monero-gui: Update to 0.17.3.0. 
* gnu/packages/finance.scm (monero-gui): Update to 0.17.3.0.
 2021-12-08 13:31:37 +01:00
Guillaume Le Vaillant
107481ea0f
gnu: monero: Update to 0.17.3.0. 
* gnu/packages/finance.scm (monero): Update to 0.17.3.0.
* gnu/packages/patches/monero-use-system-miniupnpc.patch: Update patch.
 2021-12-08 13:31:37 +01:00
Efraim Flashner
c9b42242f9
gnu: python-userspacefs: Update to 2.0.4. 
* gnu/packages/python-xyz.scm (python-userspacefs): Update to 2.0.4.
 2021-12-08 12:34:13 +02:00
Efraim Flashner
f45e304aa4
gnu: python-dropbox: Update to 11.25.0. 
* gnu/packages/file-systems.scm (python-dropbox): Update to 11.25.0.
[propagated-inputs]: Remove python-certifi, python-chardet, and python-urllib3.
 2021-12-08 11:51:03 +02:00
Marius Bakke
ddcec589bc
gnu: lollypop: Update to 1.4.24. 
* gnu/packages/gnome.scm (lollypop): Update to 1.4.24.
[native-inputs]: Remove INTLTOOL and ITSTOOL.  Add GETTEXT-MINIMAL.
 2021-12-08 08:46:28 +01:00
Marius Bakke
2b8b89b7ab
gnu: python-toolz: Update to 0.11.2. 
* gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.2.
 2021-12-08 08:46:28 +01:00
Marius Bakke
6f29d34bb2
gnu: python-django: Update to 3.2.10 [fixes CVE-2021-4442]. 
* gnu/packages/django.scm (python-django): Update to 3.2.10.
 2021-12-08 08:46:28 +01:00
Marius Bakke
b5e69cf6c1
gnu: python-django@2.2: Update to 2.2.25 [fixes CVE-2021-4442]. 
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.25.
 2021-12-08 08:46:28 +01:00
Marius Bakke
cb8d62bd42
gnu: hitch: Update to 1.7.2. 
* gnu/packages/web.scm (hitch): Update to 1.7.2.
 2021-12-08 08:46:28 +01:00
Marius Bakke
ee03b51f6e
gnu: lollypop: Build with libsoup@2. 
* gnu/packages/gnome.scm (lollypop)[inputs]: Change from LIBSOUP to
LIBSOUP-MINIMAL-2.
 2021-12-08 08:45:11 +01:00
Marius Bakke
637735da4d
gnu: rhythmbox: Adjust inputs. 
* gnu/packages/gnome.scm (rhythmbox)[inputs]: Change from PYTHON2-PYGOBJECT to
PYTHON-PYGOBJECT. Add LIBSOUP-MINIMAL-2.
 2021-12-08 08:45:11 +01:00
Marius Bakke
14bc2ce43a
gnu: labelme: Loosen Python requirements. 
* gnu/packages/image-processing.scm (labelme)[arguments]: Patch setup.py so it
does not require a specific version of Matplotlib.
 2021-12-08 08:45:11 +01:00
Julien Lepiller
ed27614660
nls: Update 'es' translation. 2021-12-08 01:19:45 +01:00
Mark H Weaver
906dd9ff63
gnu: icecat: Update to 91.4.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2021-43536, CVE-2021-43537, CVE-2021-43538,
CVE-2021-43539, CVE-2021-43541, CVE-2021-43542, CVE-2021-43543,
CVE-2021-43545, CVE-2021-43546, and MOZ-2021-0009.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Remove icecat-CVE-2021-43527.patch, which is now included
in upstream icecat.  Update the gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-CVE-2021-43527.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-12-07 19:09:24 -05:00
Denis 'GNUtoo' Carikli
9e67f2ad41
gnu: Add kiwix-tools. 
* gnu/packages/web.scm (kiwix-tools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-12-07 17:28:44 -05:00