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Author SHA1 Message Date
Efraim Flashner
5bf834225a
gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324]. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2.
[native-inputs]: Switch python to python-wrapper.
[arguments]: Add '--without-doxygen' and '--disable-gtk3'.
 2016-07-01 15:53:08 +03:00
Efraim Flashner
2638ec61e0
gnu: orcus: Update to 0.9.2. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
 2016-07-01 15:51:32 +03:00
Ben Woodcroft
71830f0e49
gnu: vsearch: Update to 2.0.1. 
*  gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
 2016-07-01 09:01:28 +10:00
Ben Woodcroft
c7f04517a6
gnu: Add r-glmnet. 
* gnu/packages/statistics.scm (r-glmnet): New variable.
 2016-07-01 09:01:20 +10:00
Efraim Flashner
84d08af653
gnu: busybox: Use 'modify-phases'. 
* gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
 2016-06-30 19:11:45 +03:00
Efraim Flashner
2e5505e5ea
gnu: busybox: Update to 1.25.0. 
* gnu/packages/busybox.scm (busybox): Update to 1.25.0.
[native-inputs]: Add which.
 2016-06-30 19:11:27 +03:00
Efraim Flashner
5fc4df0cb5
gnu: owncloud-client: Remove some bundled libs. 
* gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet
removing some of the 3rd party projects.
 2016-06-30 10:56:57 +03:00
Efraim Flashner
9b1c1ea129
gnu: owncloud-client: Update to 2.2.2. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
 2016-06-30 09:55:18 +03:00
Danny Milosavljevic
f4155188c3
gnu: Add python-prompt-toolkit. 
* gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-29 22:31:05 -04:00
Leo Famulari
e4875826d8
gnu: python-wcwidth: Add missing 'properties' field. 
This is a followup to commit a44fd439dc.

* gnu/packages/python.scm (python-wcwidth)[properties]: New field.
 2016-06-29 22:25:44 -04:00
Ludovic Courtès
468e0b18d1
gnu: ceres-solver: Propagate GLOG. 
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
 2016-06-29 16:08:46 +02:00
Jan Nieuwenhuizen
ad85791265
gnu: linux-initrd: Support NVMe devices. 
* gnu/system/linux-initrd.scm (base-initrd): Add nvme to linux-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-29 16:08:46 +02:00
Ben Woodcroft
8dec2229a2
gnu: blast+: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
 2016-06-29 22:42:47 +10:00
Ludovic Courtès
bc3a2e3503
gnu: ceres-solver: Depend on glog. 
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
 2016-06-29 12:01:05 +02:00
Ludovic Courtès
53d159f843
gnu: Add glog. 
* gnu/packages/logging.scm (glog): New variable.
 2016-06-29 11:13:03 +02:00
Ludovic Courtès
2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'. 
Fixes <http://bugs.gnu.org/23744>.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.

* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
 2016-06-29 10:06:18 +02:00
Ludovic Courtès
c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'. 
* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
 2016-06-29 10:06:18 +02:00
Ricardo Wurmus
b0069a6777
gnu: avrdude: Use libusb-compat. 
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
 2016-06-29 07:15:33 +02:00
Ben Woodcroft
3bce0f14b2
gnu: star: Update to 2.5.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
 2016-06-29 10:14:22 +10:00
Ben Woodcroft
6c737963f6
gnu: htslib: Update to 1.3.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
 2016-06-29 10:14:22 +10:00
Ricardo Wurmus
ec9466388e
gnu: Add SEEK. 
* gnu/packages/bioinformatics.scm (seek): New variable.
 2016-06-28 22:49:05 +02:00
Ben Woodcroft
d6e374a0d9
gnu: mafft: Update to 7.299. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
 2016-06-28 21:42:15 +10:00
Efraim Flashner
48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa." 
This reverts commit 763a8e6e23.
 2016-06-28 14:33:37 +03:00
Ben Woodcroft
45469ebe52
gnu: metabat: Update to 0.26.3. 
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
 2016-06-28 21:28:06 +10:00
Ben Woodcroft
af45244e36
gnu: diamond: Update to 0.8.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
 2016-06-28 19:31:25 +10:00
Ricardo Wurmus
05e9f30f1e
gnu: r: Add pango to inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
 2016-06-28 09:36:00 +02:00
Ludovic Courtès
d2fa61bc35
tests: Add Avahi and NSS-mDNS test. 
* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
c8695f325d
services: avahi: Add #:debug? parameter. 
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
194ccecf77
services: avahi: Pass --daemonize and check for the PID file. 
This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.

* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>. 
* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly.  Add #:requirements
parameter and honor it.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
858d372c98
tests: base: Add host name resolution tests. 
* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
9009538d84
services: Export more service types. 
* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès
04101d99ee
services: nscd: Wait for the PID file. 
* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
 2016-06-27 21:41:38 +02:00
Kei Kebreau
aea7d1d516
gnu: Add orage. 
* gnu/packages/xfce.scm (orage): New variable.
 2016-06-27 12:58:06 -04:00
宋文武
06961617a1
gnu: python2-orator: Rearrange inputs. 
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
b26760302a
gnu: python-orator: Rearrange inputs. 
* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
24c9aa1810
gnu: python2-fake-factory: Rearrange inputs. 
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
bbcd729791
gnu: python-fake-factory: Rearrange inputs. 
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
d42560bdfa
gnu: python-email-validator: Rearrange inputs. 
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
9403150a96
gnu: python-cleo: Rearrange inputs. 
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
36aed73648
gnu: python-arrow: Rearrange inputs. 
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
c8fa3d9b73
gnu: python-pykafka: Rearrange inputs. 
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
c18899e8cf
gnu: python-kazoo: Rearrange inputs. 
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武
4591217058
gnu: python-twisted: Rearrange inputs. 
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
Matthew Jordan
7a2941a83e
gnu: Add Go 1.4. 
* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-27 14:09:10 +02:00
Ben Woodcroft
94ff31572d
gnu: Add khmer. 
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-27 21:35:16 +10:00
Ben Woodcroft
9ded145717
gnu: Add python-screed. 
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
 2016-06-27 21:16:39 +10:00
Efraim Flashner
095b7fea44
gnu: qttools: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
 2016-06-27 05:25:32 +03:00
Efraim Flashner
677b98ae68
gnu: qtlocation: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
 2016-06-27 05:25:30 +03:00
Efraim Flashner
a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
 2016-06-27 05:25:27 +03:00