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127299 commits

Author SHA1 Message Date
Ricardo Wurmus
cb0e6b7711
gnu: r-biocgraph: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.64.0.

Change-Id: Ic9aa7212fa29c9ee691219d915de532b63fc6a37
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
ee1f2a995f
gnu: r-bioccheck: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.0.
[propagated-inputs]: Add r-biocbaseutils and r-callr.

Change-Id: I98e6b4ad7e3c32597435a3656adcd1cf10d3b019
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
e477608856
gnu: r-biocbaseutils: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.4.0.

Change-Id: Id934591d48281066c90c36fdb9c0ef715188f8fd
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
92a1f44f6d
gnu: r-ebarrays: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.66.0.

Change-Id: Ib13ff4d7edabeba4c3250337f0d23629b9426328
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
72ad29f730
gnu: r-reactomepa: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.46.0.

Change-Id: I543add10e14ad634795e29f6db2e07a518878108
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
26e71b7a72
gnu: r-graphite: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.48.0.

Change-Id: Ifcaed9653072ac86fbda18ac7dcf3686dd66116e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
026bc372d8
gnu: r-biobroom: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.34.0.

Change-Id: Iba62b38441f0127acb0880105dc4fb174238412b
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
c0beba2647
gnu: r-bioassayr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.40.0.

Change-Id: Idfd958f0ea6e3e73c83a2f67b59c2f600c4de109
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
be0482d40f
gnu: r-fmcsr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.44.0.

Change-Id: Ie4da389382e4d3836342be872a88dcbeb69f59ed
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
dadf10ed8b
gnu: r-chemminer: Update to 3.54.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.54.0.

Change-Id: I43836d9323e3034c02a9864deddaf4a854a8e909
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
8d14b99d75
gnu: r-chemmineob: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.40.0.

Change-Id: Ic7ab360eafea01ea0f7f586b588120c468d8ffd6
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
df794c84f9
gnu: r-biggr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.38.0.

Change-Id: I2dd8a24f1f73782ab888af0f89654e0ef7302b3e
2023-11-03 22:49:25 +01:00
Ricardo Wurmus
0f8cccb01f
gnu: r-hyperdraw: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.54.0.

Change-Id: I0d49e7993e9225d409e863ddba3f6f832b3f95aa
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
59e55fc39e
gnu: r-hypergraph: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.74.0.

Change-Id: I7053e0b906422526bc57220fc63fde8700a40524
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
0fc5a510b5
gnu: r-hybridmtest: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.46.0.

Change-Id: If225eb7af55746651921d924a10ee95ee9b071b8
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
772c6fb840
gnu: r-rsbml: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.60.0.

Change-Id: Ie1f3bc87e1c4c5df2fece70aa0a72133e038f347
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
99ff99c9eb
gnu: r-bifet: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.22.0.

Change-Id: I8207d5945dcbba850610e1ce6b77f834c927fa2c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a70ca6a613
gnu: r-bicare: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.60.0.

Change-Id: I231f0c6f24b62a9bf999b39af003156cd1578289
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
6f38f25816
gnu: r-bhc: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.54.0.

Change-Id: I52b46125e0cb912b4e27d4198a676d311a5c5eb9
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
bab03df210
gnu: r-bgx: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.0.

Change-Id: Idcab4760b9e96d74f96c0f9a09c945d9d960e598
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
2fa21de9c2
gnu: r-acde: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.32.0.

Change-Id: I2f7fd79361be6326b307fbb7d3ef4c7bf6a585ed
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
84de1e4ade
gnu: r-acme: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.58.0.

Change-Id: Ife3005c7a63743eed0f86c5037a06d9e38a14097
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
85060391ba
gnu: r-acgh: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.80.0.

Change-Id: Ic9fb3c4309c733b49f6af9e37ed80a519bdf9357
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
865e3e75a8
gnu: r-ace: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.20.0.

Change-Id: Ifc01abdde81766045c6f4e47df49f45785f59f94
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
45cbc2372e
gnu: r-universalmotif: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.20.0.

Change-Id: I72bb6459df1e04875888fa9f77b726ec54055ca3
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
642f470df1
gnu: r-unifiedwmwqpcr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.38.0.

Change-Id: Iee0e28569f7be1940b6a3dbf167dc916c16833df
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
428f4cb50b
gnu: r-ucell: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.1.

Change-Id: I2bf8868b8d1f7fa1bdedfc6f999e586a869b9e1e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3ff2e070fe
gnu: r-htqpcr: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.56.0.

Change-Id: Ib8428af779a98690de7304225da31b7697d1fa45
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3df0e523f2
gnu: r-variancepartition: Update to 1.32.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.1.
[propagated-inputs]: Remove r-doparallel, r-foreach, and r-progress; add r-corpcor and
r-fancova.

Change-Id: Iccea2f1b1929d23b821142aebe121bc09ff62b44
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
75cac71be2
gnu: r-variantfiltering: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.38.0.

Change-Id: I598d983c5d7e0f45da04c14f2fc6453e6ef88d98
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
3c93fab37f
gnu: r-tilingarray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.80.0.

Change-Id: I78c5d57af6117ce78232ebfa065416fd7d2a6cc4
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
43ea1c324a
gnu: r-wavcluster: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.36.0.

Change-Id: I24818db21be07d1f5476dc5abea2b067d9b6623c
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
fb6da71504
gnu: r-reqon: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.48.0.

Change-Id: Idd4e403b3ed3ca84cad80657a46fd4c9e0c1582d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b22318e0af
gnu: r-seqbias: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.50.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: Ibf4e49bffefec0eb6a1e4e6d1c29383c37f8bbfb
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
a36fba9d1b
gnu: r-bigmelon: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.28.0.

Change-Id: Iaf3adc3d1d05923bd031c52c03d1fc7a76955720
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
86bc7de016
gnu: r-gdsfmt: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.38.0.

Change-Id: If6494e1a21fcde1e63ace19746346368234a8f6b
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
b90a54605a
gnu: r-watermelon: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.8.0.

Change-Id: Iefca41487698e294fb369f4016f67fb147464e72
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
ef52ea9c6d
gnu: r-roc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.78.0.

Change-Id: I54dc89ba0e9bc6c3274da7af2e43191c2a6f9e2f
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5fa4d39b7a
gnu: r-genie3: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.24.0.

Change-Id: I5fd664aecec4037793a190326936c11316499f8d
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
8ef81e22b3
gnu: r-circrnaprofiler: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.16.0.

Change-Id: I31457048a3c1659b0765ae1732f492567c7397dd
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
5e268c72a4
gnu: r-cicero: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.20.0.

Change-Id: I23c4a69ca3b7b97811fb4b919646a2d998cb931e
2023-11-03 22:49:24 +01:00
Ricardo Wurmus
d73af33e49
gnu: r-chicago: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.30.0.

Change-Id: Id395b5593684d98ddfe9af7a65fb03c2be46d43c
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
93322f6240
gnu: r-depecher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.18.0.
[propagated-inputs]: Add r-collapse.

Change-Id: I24ec77ec5ec4f85e21eb00de3494106876c0ec40
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
a32a12ec27
gnu: r-flowsom: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.10.0.

Change-Id: I18e214006f6c4ae17d6ddc53a744e9d7b1747260
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
c9533f5df9
gnu: r-cytoml: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.14.0.

Change-Id: Ibfe47c6d75d500b0f89fd1f8abf3d670035136d3
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
0d5d1163d7
gnu: r-opencyto: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.14.0.

Change-Id: I888c78a43379b91be3ce60e761e6b1b199fcf86d
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
127590d8ad
gnu: r-flowstats: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.0.
[propagated-inputs]: Add r-clue.

Change-Id: Ib1c5eb4d5122bf25ca0e68d4404777cc8406526a
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
d97e582d89
gnu: r-flowworkspace: Update to 4.14.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.0.

Change-Id: I97248860f6b887d00787e22e9ac873123ba1f2c2
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
e6188fe703
gnu: r-rprotobuflib: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.14.0.

Change-Id: I91320a80b921f1dc7b9fb858465328be105170aa
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
ca1998e47d
gnu: r-flowclust: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.40.0.

Change-Id: I50c0766d93b13489adfe800d2d06b11545bfa43b
2023-11-03 22:49:23 +01:00