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Author SHA1 Message Date
Mark H Weaver
704051b258
gnu: linux-libre@4.14: Update to 4.14.48. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.48.
(%linux-libre-4.14-hash): Update hash.
 2018-06-05 17:20:57 -04:00
Mark H Weaver
4418c59005
gnu: linux-libre@4.9: Update to 4.9.106. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.106.
 2018-06-05 17:20:53 -04:00
Ricardo Wurmus
b4a145fa71
gnu: yoshimi: Update to 1.5.8. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.
 2018-06-05 23:18:10 +02:00
Efraim Flashner
396aab8e69
gnu: freedoom: Fix compilation. 
* gnu/packages/games.scm (freedoom)[arguments]: Remove 'bootstrap phase.
 2018-06-05 22:53:48 +03:00
Efraim Flashner
d88884fa3b
gnu: arc-theme: Replace bootstrap phase. 
* gnu/packages/gmome.scm (arc-theme)[arguments]: Replace 'boostrap phase
with a custom phase.
 2018-06-05 22:53:45 +03:00
Efraim Flashner
f1c6de3735
gnu: tilda: Replace bootstrap phase. 
* gnu/packages/terminals.scm (tilda)[arguments]: Remove custom
'bootstrap phase and use it to replace default bootstrap phase.
 2018-06-05 22:10:49 +03:00
Ricardo Wurmus
909301591d
gnu: Add sjcount. 
* gnu/packages/bioinformatics.scm (sjcount): New variable.
 2018-06-05 15:42:44 +02:00
宋文武
97f6e9133a
services: Add dnsmasq-service-type. 
* gnu/services/dns.scm (dnsmasq-service-type): New variable.
(<dnsmasq-configuration>): New record type.
(dnsmasq-shepherd-service): New procedure.
* doc/guix.texi (DNS Services): Document it.
 2018-06-05 20:05:31 +08:00
Ricardo Wurmus
a64e30ed9e
gnu: Remove duplicate definition of r-heatmaply. 
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
 2018-06-05 13:59:54 +02:00
Ricardo Wurmus
d0f3427433
gnu: Remove duplicate definition of r-heatmaply. 
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
 2018-06-05 13:59:15 +02:00
Ricardo Wurmus
1ee581973a
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
 2018-06-05 13:51:27 +02:00
Ricardo Wurmus
6da3aa3763
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
 2018-06-05 13:50:29 +02:00
Ricardo Wurmus
e53152c72d
gnu: dropseq-tools: Remove failing phase. 
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
 2018-06-05 13:12:13 +02:00
Ricardo Wurmus
0c68f7fd9b
gnu: java-bouncycastle: Disable tests. 
* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
 2018-06-05 12:49:41 +02:00
Ricardo Wurmus
9cc66d75a2
gnu: pigx-scrnaseq: Use only one variant of Picard. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
 2018-06-05 11:26:34 +02:00
Ricardo Wurmus
1f94ba9408
gnu: java-picard: Delete failing build phase. 
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
 2018-06-05 11:26:08 +02:00
Ricardo Wurmus
1ed386fc26
gnu: java-cisd-jhdf5: Delete failing build phase. 
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
 2018-06-05 11:17:03 +02:00
Ricardo Wurmus
a993ad833e
gnu: java-picard-1.113: Delete failing build phase. 
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
 2018-06-05 11:15:21 +02:00
Ricardo Wurmus
e847f402c1
gnu: java-picard-2.10.3: Delete failing build phase. 
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
 2018-06-05 11:14:38 +02:00
Ricardo Wurmus
d7e6fb6d7e
Merge branch 'master' into core-updates 2018-06-05 11:09:39 +02:00
Ricardo Wurmus
71c495c941
gnu: r-rtracklayer: Update to 1.40.3. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
fb8c17baef
gnu: r-ranger: Update to 0.10.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
c9a879ed54
gnu: r-np: Update to 0.60-8. 
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
83d5c2e106
gnu: t-series: Update to 0.10-45. 
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
c152c6b361
gnu: r-ksamples: Update to 1.2-8. 
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
d19e0690b9
gnu: r-methylkit: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
0da6afa286
gnu: r-bamsignals: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
 2018-06-05 10:40:42 +02:00
Ricardo Wurmus
66ece08d05
Merge branch 'master' into core-updates 2018-06-05 09:59:27 +02:00
Ricardo Wurmus
0ebef06dbe
build-system/r: Update to Bioconductor 3.7. 
This is a follow-up to 41f17554d8.

* guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
 2018-06-05 09:58:52 +02:00
Tobias Geerinckx-Rice
4bf0a1f8d1
gnu: p11-kit: Update to 0.23.12. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
 2018-06-05 03:19:48 +02:00
Mark H Weaver
8b71684a20
gnu: elfutils: Disable test suite on MIPS. 
* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
 2018-06-04 21:19:35 -04:00
Tobias Geerinckx-Rice
46fce96881
gnu: beets: Return #t from phases. 
* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for
SYSTEM* and return #t from all phases.
 2018-06-05 03:19:26 +02:00
Tobias Geerinckx-Rice
123f86d898
gnu: nano: Update to 2.9.8. 
* gnu/packages/nano.scm (nano): Update to 2.9.8.
 2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice
0d35a95417
gnu: python-pycurl: Update to 7.43.0.2. 
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
 2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice
4682d48363
gnu: fvwm: Update to 2.6.8. 
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
 2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice
f7b53e6855
gnu: perl-parse-yapp: Update to 1.21. 
* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
 2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice
b5dfccd7b6
gnu: perl-text-balanced: Update to 2.03. 
* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03.
[source]: Update URI.
 2018-06-05 03:01:16 +02:00
Tobias Geerinckx-Rice
971b8381ff
gnu: perl-posix-strftime-compiler: Update to 0.42. 
* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to
0.42.
 2018-06-05 03:01:07 +02:00
Tobias Geerinckx-Rice
27f89be5c9
gnu: perl-moosex-methodattributes: Update to 0.31. 
* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to
0.31.
 2018-06-05 03:00:58 +02:00
Tobias Geerinckx-Rice
91cb6eaf52
gnu: perl-module-install: Update to 1.19. 
* gnu/packages/perl.scm (perl-module-install): Update to 1.19.
[source]: Update URI.
 2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice
ed2e354b79
gnu: perl-memoize-expirelru: Update to 0.56. 
* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56.
[source]: Update URI.
 2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice
01c6607af9
gnu: ccid, pcsc-lite: Move away from alioth.debian.org. 
* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]:
Update upstream URI.
 2018-06-04 18:27:59 +02:00
Rutger Helling
19b662ea7c
gnu: ranger: Enable image support. 
* gnu/packages/disk.scm (ranger)[inputs]: Add 'w3m'.
[arguments]: Add wrapper for W3MIMGDISPLAY_PATH environment variable.
 2018-06-04 16:35:03 +02:00
Tobias Geerinckx-Rice
fd17434249
gnu: lz4: Use HTTPS home page. 
* gnu/packages/compression.scm (lz4)[home-page]: Use HTTPS.
 2018-06-04 15:35:48 +02:00
Tobias Geerinckx-Rice
b6315bc0d2
gnu: thermald: Update to 1.7.2. 
* gnu/packages/admin.scm (thermald): Update to 1.7.2.
[arguments]: Remove Upstart kluge as promised.
 2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
49d85a19fb
gnu: pdfgrep: Update to 2.1.1. 
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.1.
 2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
e1345dec67
gnu: lxqt-build-tools: Update to 0.5.0. 
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.5.0.
 2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
12eadf5649
gnu: perl-libintl-perl: Update to 1.29. 
* gnu/packages/perl.scm (perl-libintl-perl): Update to 1.29.
 2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
a0b9612fc9
gnu: perl-hash-multivalue: Update to 0.16. 
* gnu/packages/perl.scm (perl-hash-multivalue): Update to 0.16.
[source]: Update URI.
 2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice
92299d669a
gnu: perl-file-pushd: Update to 1.016. 
* gnu/packages/perl.scm (perl-file-pushd): Update to 1.016.
 2018-06-04 15:35:46 +02:00