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Author SHA1 Message Date
Efraim Flashner
3ac90f92a0
gnu: vim: Update to 8.2.4701. 
* gnu/packages/vim.scm (vim): Update to 8.2.4701.
[arguments]: Adjust custom 'skip-or-fix-failing-tests phase to skip
another test.
 2022-04-06 22:57:48 +03:00
Mathieu Othacehe
c2125e59d0
installer: user: Remove useless filtering. 
* gnu/installer/user.scm (users->configuration): Remove root account filtering
that is now performed in the "run-user-add-page" procedure.
 2022-04-06 21:19:08 +02:00
Mathieu Othacehe
2bfb27af56
installer: user: Forbid root user creation. 
Forbid root user creation as it could lead to a system without any
non-priviledged user accouts.

Fixes: <https://issues.guix.gnu.org/54666>.

* gnu/installer/newt/user.scm (run-user-add-page): Forbid it.
 2022-04-06 21:19:07 +02:00
Ricardo Wurmus
3b262b51fa
gnu: python-pybtex: Update to 0.24.0. 
* gnu/packages/python-xyz.scm (python-pybtex): Update to 0.24.0.
[native-inputs]: Remove python-nose; add python-pytest.
[inputs]: Move python-latexcodec, python-pyyaml, and python-six from here...
[propagated-inputs]: ...to here.
[arguments]: Use pytest.
 2022-04-06 12:37:33 +02:00
Ricardo Wurmus
e1df15794b
gnu: python-latexcodec: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 2.0.1.
[inputs]: Move python-six from here...
[propagated-inputs]: ...to here.
 2022-04-06 12:37:10 +02:00
Hong Li
e3e3381fdb
gnu: Add r-rnaseqdtu. 
* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
730ac9ab85
gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
a8182f386e
gnu: Add r-rafalib. 
* gnu/packages/cran.scm (r-rafalib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mark H Weaver
3b3cc9dfed
gnu: icecat: Update to 91.8.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713,
CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and
CVE-2022-28289.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-04-05 18:12:15 -04:00
Liliana Marie Prikler
4bfb75531c
gnu: poco: Make description a full sentence. 
* gnu/packages/cpp.scm (poco)[description]: Expand into a full sentence.
 2022-04-05 21:17:59 +02:00
Ricardo Wurmus
d643ef38ed
gnu: u-boot-rockpro64-rk3399: Add support for booting from SCSI/SATA. 
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Add
  'patch-config phase to support SCSI/SATA disks.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2022-04-05 12:05:28 -07:00
Vagrant Cascadian
4a0d045990
gnu: u-boot: Update to 2022.04. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01.
  [native-inputs]: Add gnutls, tinfo, libuuid.
  (u-boot-qemu-riscv64-smode): Drop custom
  patches.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch.
* gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch,
  applied upstream.
* gnu/local.mk (dist_patch_DATA): Update with removed patches.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-05 12:05:22 -07:00
Vagrant Cascadian
20302e0b16
gnu: Add ncurses-with-tinfo. 
* gnu/packages/ncurses.scm (ncurses/tinfo): New variable.
 2022-04-05 12:05:19 -07:00
Andrew Tropin
e777c3e34c
gnu: l2md: Update to 9db252bc. 
[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]]

* gnu/packages/mail.scm (l2md): Update to 9db252bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
Attila Lendvai
9ef6d80ef4
services: messaging: Fix two copy-paste mistakes; avoid warnings. 
* gnu/services/messaging.scm (file-name-list, file-object-list): Fix
name in 'define-maybe' instances.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
ykonai
84e0cbbc9c
gnu: plocate: Build with "--sharedstatedir=/var". 
Current plocate package sets the --sharedstatedir to a store directory, which
causes updatedb and plocate to fail by default since the store is immutable.
This will set the default database path to /var/cache/plocate.db instead.

* gnu/packages/search.scm (plocate): Change build options.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
Leo Nikkilä
d15a601a85
gnu: phodav: Use libsoup 2 instead of libsoup 3. 
Looks like phodav requires libsoup 2. Example of failing build logs,
wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw>

After swapping the dependency, tests were failing due to HOME not being
writable. I added a new build phase to account for this. I also removed
the start-virtual-dir-server phase which no longer seems required, the
tests pass without it.

* gnu/packages/gnome.scm (phodav): Fix build, tests.
[inputs]: Replace libsoup 3 with libsoup 2.
[arguments]<#:phases>[set-temporary-home]: New phase.
[arguments]<#:phases>[start-virtual-dir-server]: Remove phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
86ee397e26
gnu: pantheon-calculator: Update to 1.7.2. 
* gnu/packages/pantheon.scm (pantheon-calculator): Update to 1.7.2.
[arguments]: Remove trailing boolean.
[inputs]: Use guix style and add libhandy input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Felix Gruber
c9cca908fa
gnu: python-w3lib: Fix build. 
* gnu/packages/python-web.scm (python-w3lib): Fix build.
  [source]: Add python-w3lib-fix-test-failure.patch.
  [arguments]: Use pytest in the 'check phase.
  [native-inputs]: Add python-pytest.
* gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Zhu Zihao
27a6e8501f
gnu: python-gst: Fix the concatenation of install path. 
Fixes a regression introduced in a5c2e7961c.

* gnu/packages/gstreamer.scm (python-gst):
[arguments]:
<configure-flags>: Add missing leading slash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
9d25dab4db
gnu: python-dotenv: Update to 0.20.0. 
* gnu/packages/python-xyz.scm (python-dotenv): Update to 0.20.0.
[home-page]: Update home page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
antlers
0748d3febd
gnu: linux: Allow kconfig options to be strings 
* gnu/packages/linux.scm (config->string): add a clause handling strings

Allows for the declarative configuration of kconfig options which accept
strings, such as CONFIG_MODULE_SIG_KEY.

I've enclosed the given string in quotes, but don't do any kind of
escaping. See the kernel mailing list for the current state of escaped
strings upstream:

https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/

Apologies to those with double-quotes or backslashes in their
CONFIG_SYSTEM_*_KEYS.

Signed-off-by: antlers <autumnalantlers@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Michael Rohleder
3e599b99da
gnu: celluloid: Update to 0.23. 
* gnu/packages/video.scm (celluloid): Update to 0.23.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Aleksandr Vityazev
1e0cd871b8
doc: Update the sample yggdrasil-private.conf. 
* doc/guix.texi (Networking Services): Update the sample yggdrasil-private.conf.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Imran Iqbal
1fed7ab09e
gnu: curlie: Update to 1.6.9 
* gnu/packages/curl.scm (curlie): Update to 1.6.9

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Daniel Meißner
2a70e7922c
gnu: xmonad-next: Change #:phases to gexp. 
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name
and #$synopsis instead of %output, name and synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Ricardo Wurmus
66177c2b87
Merge branch 'wip-pyyaml' 2022-04-05 19:03:57 +02:00
Ricardo Wurmus
df2dc0c416
gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR. 
This is needed since the update of python-loompy.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename
'set-PYTHONPATH to 'set-additional-environment-variables and set
NUMBA_CACHE_DIR.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
e721122069
gnu: pigx-scrnaseq: Use new inputs style. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
5d1c9fcdcf
gnu: pigx-scrnaseq: Update to 1.1.8. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8.
[patches]: Remove.
[native-inputs]: Remove.
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-04-05 18:40:48 +02:00
Florian Pelz
029cb8c95f
news: Add 'de' translation. 
* etc/news.scm: Add German translation of 'guix shell --export-manifest' entry.
 2022-04-05 16:28:48 +02:00
Ricardo Wurmus
860010ac2a
gnu: r-with-tests: Update to 4.1.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3.
 2022-04-05 15:14:41 +02:00
Greg Hogan
78e8c20179
gnu: git: Update to 2.35.1. 
* gnu/packages/version-control.scm (git): Update to 2.35.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-05 08:48:47 -04:00
Maxim Cournoyer
8a9bf794e1
Revert "gnu: git: Update to 2.35.1." 
This reverts commit 223a3d7f7f, as it triggered
thousands of rebuilds due to inadvertently touching git-minimal/fixed.

Reported-by: Christopher Baines <mail@cbaines.net>
 2022-04-05 08:41:36 -04:00
Ricardo Wurmus
27720d0fe1
gnu: python-pyyaml: Update to 6.0. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.
 2022-04-05 10:56:28 +02:00
Ricardo Wurmus
d3e1a94391
gnu: python2-pyyaml: Detach source from python-pyyaml. 
* gnu/packages/python-xyz.scm (python2-pyyaml): Override source and version
fields.
(python-pyyaml)[properties]: Add python2-variant.
 2022-04-05 10:56:23 +02:00
Leo Famulari
20303c0b1c
gnu: eyeD3: Update to 0.9.6. 
* gnu/packages/mp3.scm (eyed3): Update to 0.9.6.
[propagated-inputs]: Add python-deprecation and python-filetype.
 2022-04-04 19:57:12 -04:00
Ludovic Courtès
b1e7e64f35
news: Add entry about 'guix shell --export-manifest'. 
* etc/news.scm: Add entry.
 2022-04-04 23:12:07 +02:00
Ludovic Courtès
c42b7baf13
shell: Add '--export-manifest'. 
* guix/scripts/shell.scm (show-help, %options): Add '--export-manifest'.
(manifest-entry-version-prefix, manifest->code*)
(export-manifest): New procedures.
(guix-shell): Honor '--export-manifest'.
* tests/guix-shell-export-manifest.sh: New file.
* Makefile.am (SH_TESTS): Add it.
* doc/guix.texi (Invoking guix shell): Document '--export-manifest'.
(Invoking guix environment): Link to it.
(Invoking guix pack): Likewise.
 2022-04-04 22:58:04 +02:00
Ludovic Courtès
6fed836a6f
environment: Export 'load-manifest'. 
* guix/scripts/environment.scm (load-manifest): New procedure.
(options/resolve-packages): Use it.
 2022-04-04 22:58:03 +02:00
Ludovic Courtès
f54f2aa9df
packages: Add 'package-unique-version-prefix'. 
* gnu/packages.scm (package-unique-version-prefix): New procedure.
* guix/scripts/package.scm (manifest-entry-version-prefix): Use it.
* tests/packages.scm ("package-unique-version-prefix, gcc@8")
("package-unique-version-prefix, grep"): New tests.
 2022-04-04 22:58:03 +02:00
Feng Shu
4b451813f7
gnu: Add parole. 
* gnu/packages/xfce.scm (parole): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:03 +02:00
Ludovic Courtès
e692dc632c
services: Add 'log-cleanup' service to '%base-services' for build logs. 
* gnu/services/base.scm (%base-services): Add 'log-cleanup-service-type'
instance.
* doc/guix.texi (Log Rotation): Add example and mention '%base-services'.
 2022-04-04 22:58:03 +02:00
Ludovic Courtès
3b9b3b4931
services: Add 'log-cleanup-service-type'. 
* gnu/services/admin.scm (<log-cleanup-configuration>): New record
type.
(log-cleanup-program, log-cleanup-mcron-jobs): New procedures.
(log-cleanup-service-type): New variable.
* doc/guix.texi (Log Rotation): Document it.
 2022-04-04 22:58:03 +02:00
kiasoc5
2bef31fe25
gnu: mediainfo: Update to 22.03. 
* gnu/packages/video.scm (mediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:03 +02:00
kiasoc5
f9ad9d65fe
gnu: libmediainfo: Update to 22.03. 
* gnu/packages/video.scm (libmediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
095c609dfd
gnu: gtkmm: Update to 4.6.1. 
* gnu/packages/gtk.scm (gtkmm): Update to 4.6.1.
[propagated-inputs]: Remove atkmm because it's no longer needed.
* gnu/packages/gtk.scm (pangomm): Update to 2.50.0.
[propagated-inputs]: Replace 'pango' with 'pango-next'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
287b98031f
gnu: Add fcitx5-gtk4. 
* gnu/packages/fcitx5.scm (fcitx5-gtk4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
ef3cae59a2
gnu: gtk: Update to 4.6.1. 
* gnu/local.mk (dist_patch_DATA): Remove gtk-introspection-test.patch.
* gnu/packages/patches/gtk-introspection-test.patch: Remove.
* gnu/packages/gtk.scm (gtk): Update to 4.6.1.
[source]: Remove stale patch.
[arguments]<phases>: Add 'patch-rst2man' phase, correct the binary name of
rst2man to 'rst2man.py'
[inputs]: Add libjpeg-turbo, libpng, libtiff.
[native-inputs]: Add python-docutils.
[propagated-inputs]: Use pango-next.
* gnu/packages/fcitx5.scm (fcitx5-gtk)[arguments]: Disable GTK4 build.
<configure-flags>: Add "-DENABLE_GTK_IM_MODULE=OFF".
<phases>: In phase "patch-install-prefix", Remove GTK4 code.
[inputs]: Remove package gtk.
[outputs]: Remove output "gtk4".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
4df7fe14ff
gnu: pango 1.50: Add version 1.50.4. 
* gnu/packages/gtk.scm(pango-next): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00