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Author SHA1 Message Date
Maxim Cournoyer
51b6715960
packages: Fix typo in package-superseded doc. 
* guix/packages.scm (package-superseded): Fix typo.
 2022-05-31 14:52:13 -04:00
Mark H Weaver
20432b839b
gnu: icecat: Update to 91.10.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-31736, CVE-2022-31737, CVE-2022-31738,
CVE-2022-31739, CVE-2022-31740, CVE-2022-31741, CVE-2022-31742, and
CVE-2022-31747.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-05-31 14:12:31 -04:00
Marius Bakke
be85c4d40f
gnu: ungoogled-chromium: Update to 102.0.5005.61-3. 
* gnu/packages/chromium.scm (%ungoogled-revision): Bump to latest.
(%ungoogled-origin): Update hash.
 2022-05-31 19:54:04 +02:00
Efraim Flashner
2c4c504272
gnu: python-sip-4: Update to 4.19.25. 
* gnu/packages/qt.scm (python-sip-4): Update to 4.19.25.
 2022-05-31 20:45:05 +03:00
Maxim Cournoyer
d11d27e2e4
gnu: guile-ac-d-bus: Run test suite. 
* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[source]: Apply patch.
[phases]{check}: New phase.
[native-inputs]: Add bash-minimal.
 2022-05-31 11:20:28 -04:00
Maxim Cournoyer
34c8558af2
gnu: guile-ac-d-bus: Build and install info manual. 
* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[arguments]: Use gexps.
[phases]{build-doc, install-doc}: New phases.
[native-inputs]: Add texinfo.
 2022-05-31 11:20:28 -04:00
Ricardo Wurmus
07909eb092
gnu: python-distributed: Update to 2022.05.2. 
* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2.
[arguments]: Remove 'sanity-check phase; adjust 'check phase.
[propagated-inputs]: Add python-urllib3.
[native-inputs]: Add python-pytest-timeout and python-flaky.
 2022-05-31 15:18:22 +02:00
Ricardo Wurmus
3d5144db5a
gnu: r-haven: Fix build. 
* gnu/packages/cran.scm (r-haven)[arguments]: Adjust 'unbundle-readstat phase.

Reported-by: Jonas Freimuth.
 2022-05-31 15:18:22 +02:00
Ricardo Wurmus
098d0012f5
gnu: python-fsspec: Update to 2022.5.0. 
* gnu/packages/python-xyz.scm (python-fsspec): Update to 2022.5.0.
 2022-05-31 15:18:22 +02:00
Pavel Shlyak
8b680b00d4
image: Add fat32 support. 
* gnu/build/image.scm (make-vfat-image): Pass fs-bits as an argument and force
1kb logical sector size only if "ESP" flag is set.
(make-partition-image): Add "fat32" partition type, support explicit "fat16"
type with vfat alias.
* gnu/system/image.scm (partition->dos-type partition): Return file system IDs
for "fat16" and "fat32" partitions.
(partition->gpt-type partition): Ditto.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-31 14:51:13 +02:00
yarl baudig
6169c582d1
gnu: emacs-helpful: Update to 0.19 
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19.
[source]: Use the patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-31 06:16:18 +02:00
Pierre Langlois
b8fc3403d3
gnu: gandi.cli: Fix by downgrading python-click. 
* gnu/packages/python-xyz.scm (python-click-7): New variable.
* gnu/packages/networking.scm (gandi.cli)[inputs]: Depend on python-click-7.
 2022-05-30 22:18:21 +01:00
Pierre Langlois
f12d08c6d2
gnu: python-click@8: Remove redundant package. 
The python-click package is already version 8.

* gnu/packages/python-xyz.scm (python-click-8): Remove variable.
(python-proselint)[propagated-inputs]: Depend on python-click.
 2022-05-30 22:18:12 +01:00
Ricardo Wurmus
0bcd28e58c
gnu: python-scanpy: Update to 1.9.1. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.1.
[arguments]: Add phase 'set-numba-cache-dir; disable more broken tests.
[propagated-inputs]: Add python-dask and python-session-info; replace
python-louvain-0.7 with python-louvain.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus
ca2516f065
gnu: python-leidenalg: Update to 0.8.10. 
* gnu/packages/graph.scm (python-leidenalg): Update to 0.8.10.
[arguments]: Patch setup.py.
[native-inputs]: Remove python-setuptools; add python-setuptools-scm.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus
7c8f3dfa34
gnu: python-dask: Update to 2022.05.2. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2022.05.2.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus
1257c4c663
gnu: Add python-session-info. 
* gnu/packages/python-xyz.scm (python-session-info): New variable.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus
216fb59b9b
gnu: non-sequencer: Update to 1.9.5-5.257ec59. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-5.257ec59.
[source]: Use fork as old repository is defunct; use git-file-name and
git-version.
[arguments]: Remove python-2; add phase to replace bundled waf.
[native-inputs]: Add python-waf.
(non-session-manager)[native-inputs]: Add python-waf.
(non-mixer)[inputs]: Add lv2 and lilv.
[native-inputs]: Add python-waf.
(non-timeline)[native-inputs]: Add python-waf.
 2022-05-30 23:09:46 +02:00
Liliana Marie Prikler
df43e8d45c
gnu: quodlibet: Correct wrappers. 
* gnu/packages/music.scm (quodlibet)[#:phases]: Rename ‘wrap-gi-typelib’ to
‘wrap-extra-paths’.  Use ‘=’ for GI_TYPELIB_PATH.  Add
‘GST_PLUGIN_SYSTEM_PATH’ with suffix binding.
 2022-05-30 21:28:53 +02:00
Ludovic Courtès
fed51b2614
gnu: calceph: Add 'release-monitoring-url' property. 
* gnu/packages/astronomy.scm (calceph)[properties]: New field.
 2022-05-30 16:34:41 +02:00
Sharlatan Hellseher
d730bbbbb3
gnu: Add calceph. 
* gnu/packages/astronomy.scm (calceph): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Kyle Meyer
8d5b27cae9
gnu: emacs-vterm: Update to 0.0.1-1.b447235. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0.0.1-1.b447235.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
ykonai
5e5e37fbc4
gnu: rspamd: Update to 3.2 
* gnu/packages/mail.scm (rspamd): Update to 3.2

I also added a new build option, that changes the LOCAL_CONFDIR variable to
/etc/rspamd. This allows for rspamd configuration via the /etc/rspamd/local.d
and override.d directories, which by default were located in the PREFIX which
is in /gnu/store.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
jgart
b67fd51902
gnu: pre-commit: Update to 2.19.0. 
* gnu/packages/version-control.scm (pre-commit): Update to 2.19.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Rene Saavedra
38f3d38ead
gnu: xpad: Update to 5.8.0. 
* gnu/packages/gnome.scm (xpad): Update to 5.8.0.
[inputs]: Replace gtksourceview-3 with gtksourceview.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Greg Hogan
092ee35155
gnu: casync: Update to 99559cd1. 
* gnu/packages/sync.scm (casync): Update to 99559cd1.
[source]: Remove patch.
[arguments]: Fix installation.
[native-inputs]: Add python.
[inputs]: Add eudev.
* gnu/packages/patches/casync-renameat2-declaration.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Greg Hogan
7d8f6a5db5
gnu: rsync: Update to 3.2.4. 
* gnu/packages/rsync.scm (rsync): Update to 3.2.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:39 +02:00
Morgan Smith
3f31525546
gnu: GCC: Add cross environment variables patch to GCC 12. 
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add
gcc-12-cross-environment-variables.patch.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:39 +02:00
Ludovic Courtès
56dddd05e8
gnu: emacs-w3m: Update to 20220508.2259. 
* gnu/packages/emacs-xyz.scm (emacs-w3m): Update to 20220508.2259.
[source]: Switch to 'git-fetch'.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès
7750f220be
gnu: tor: Record the file name of 'torsocks' in 'torify'. 
* gnu/packages/tor.scm (tor)[arguments]: Add 'adjust-torify' phase.
[inputs]: Add TORSOCKS.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès
61d4f9e89d
tests: Adjust crate importer test to spdx changes. 
This is a followup to 95b0544fcf.

* tests/crate.scm ("licenses: MIT/Apache-2.0 AND BSD-2-Clause"): Adjust
expected result.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès
1ae0e1dc29
store: 'map/accumulate-builds' preserves caches. 
Fixes <https://issues.guix.gnu.org/55721>.

Starting from the switch to functional object caches ca.
9e5812ac59, we would be losing accumulated
caches when aborting to the build handler.  This patch fixes that.

In particular, by preserving '%reference-cache-id', we avoid redundant
'query-references' RPCs, which accounted for a large part of the extra
processing time.

* guix/store.scm (build-accumulator): When returning an <unresolved>
node, call 'set-store-connection-caches!' before and after to preserve
caches.
(map/accumulate-builds): Pass STORE as the first argument to
the <unresolved> continuation.
 2022-05-30 16:34:39 +02:00
Ricardo Wurmus
281bf72745
gnu: r-lmom: Update to 2.9. 
* gnu/packages/statistics.scm (r-lmom): Update to 2.9.
 2022-05-30 15:35:04 +02:00
Ricardo Wurmus
eba783130f
gnu: r-chron: Update to 2.3-57. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-57.
 2022-05-30 15:34:59 +02:00
Ricardo Wurmus
85e77d93ac
gnu: r-tree: Update to 1.0-42. 
* gnu/packages/cran.scm (r-tree): Update to 1.0-42.
 2022-05-30 15:34:52 +02:00
Ricardo Wurmus
440bd1b617
gnu: r-parameters: Update to 0.18.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.18.1.
 2022-05-30 15:34:46 +02:00
Ricardo Wurmus
0880acbcb5
gnu: r-clue: Update to 0.3-61. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-61.
 2022-05-30 15:34:39 +02:00
Ricardo Wurmus
7815efe731
gnu: r-cobs: Update to 1.3-5. 
* gnu/packages/cran.scm (r-cobs): Update to 1.3-5.
 2022-05-30 15:34:34 +02:00
Ricardo Wurmus
56373df33a
gnu: r-gee: Update to 4.13-23. 
* gnu/packages/cran.scm (r-gee): Update to 4.13-23.
 2022-05-30 15:34:28 +02:00
Ricardo Wurmus
d3cb071050
gnu: r-qpdf: Update to 1.2.0. 
* gnu/packages/cran.scm (r-qpdf): Update to 1.2.0.
[source]: Remove trailing #T from snippet.
[arguments]: Remove trailing #T from 'configure phase.
[inputs]: Add libjpeg-turbo.
 2022-05-30 15:30:47 +02:00
Ricardo Wurmus
bfcae1efbb
gnu: r-batchelor: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
 2022-05-30 15:16:35 +02:00
Efraim Flashner
d2a9142852
gnu: gcc-9: Update to 9.5.0. 
* gnu/packages/gcc.scm (gcc-9): Update to 9.5.0.
 2022-05-30 15:28:04 +03:00
Efraim Flashner
dc26d0f94e
gnu: hello: Update to 2.12.1. 
* gnu/packages/base.scm (hello): Update to 2.12.1.
 2022-05-30 15:28:04 +03:00
Efraim Flashner
a037815f62
gnu: nss: Skip tests on riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: Skip tests when building for
riscv64-linux.
 2022-05-30 15:26:17 +03:00
Efraim Flashner
19e1045352
gnu: nss: Adjust make-flags for riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: When building for riscv64-linux
don't build the binaries with gtest.
 2022-05-30 15:18:17 +03:00
Evgenii Lepikhin
69b27be15d
gnu: Add rust-serde-regex-1. 
* gnu/packages/crates-io.scm (rust-serde-regex-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:53 +03:00
Evgenii Lepikhin
6ec464ced7
gnu: rust-nom-7: Update to 7.1.1. 
* gnu/packages/crates-io.scm (rust-nom-7): Update to 7.1.1.
[arguments]: In cargo-inputs replace rust-minimal-lexical-0.1 with 0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin
4f5a71d5b7
gnu: Add rust-minimal-lexical-0.2. 
* gnu/packages/crates-io.scm (rust-minimal-lexical-0.2): New variable.
(rust-minimal-lexical-0.1): Inherit from rust-minimal-lexical-0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin
4b18cb437a
gnu: Add rust-located-yaml-0.2. 
* gnu/packages/crates-io.scm (rust-located-yaml-0.2) New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00
Evgenii Lepikhin
30cf5284b2
gnu: Add rust-pretty-0.11. 
* gnu/packages/crates-io.scm (rust-pretty-0.11) New variable.
(rust-pretty-0.5): Inherit from rust-pretty-0.11.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00