Commit graph

89201 commits

Author SHA1 Message Date
Ricardo Wurmus
34ba8b256b
gnu: r-systempiper: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
2021-11-18 13:17:58 +00:00
Ricardo Wurmus
6b1375d3af
gnu: r-msnbase: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
2021-11-18 13:17:58 +00:00
Ricardo Wurmus
f917fa4e50
gnu: r-ensembldb: Update to 2.18.2.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
2021-11-18 13:17:57 +00:00
Ricardo Wurmus
30038c5738
gnu: r-chipseeker: Update to 1.30.2.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
2021-11-18 13:17:57 +00:00
Ricardo Wurmus
443ed83bc3
gnu: r-annotationdbi: Update to 1.56.2.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
2021-11-18 13:17:57 +00:00
Ricardo Wurmus
f66da037b4
tests: Replace texlive importer tests.
* tests/texlive.scm (xml, sxml): Remove variables.
("fetch-sxml: returns SXML for valid XML", "sxml->package"): Remove tests.
("texlive->guix-package"): Add new test.
2021-11-18 13:17:57 +00:00
Ricardo Wurmus
424f2c92b4
import: texlive: Take different package database as optional argument.
* guix/import/texlive.scm (tlpdb->package): Expect PACKAGE-DATABASE as
argument.
(texlive->guix-package): Accept PACKAGE-DATABASE keyword.
2021-11-18 13:17:57 +00:00
Ricardo Wurmus
a030511fd9
import: texlive: Print inputs with labels and guixified names.
* guix/import/texlive.scm (tlpdb->package): Improve handling of propagated-inputs.
2021-11-18 13:17:56 +00:00
Simon South
b0eaa4f2d7
gnu: strace: Allow readlink, readlinkat tests to pass.
Modify the invocation of strace's "readlink" and "readlinkat" tests to prevent
them from failing due to an additional system call made by Guix's patched
version of glibc.

* gnu/packages/linux.scm (strace)[source]: Add patch.
[arguments]<#:phases>: Do not disable the "readlink" test now that it can
succeed.
* gnu/packages/patches/strace-readlink-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:11:43 +01:00
Ludovic Courtès
696b0a3246
gnu: qgpgme: Use 'modify-inputs'.
* gnu/packages/gnupg.scm (qgpgme)[inputs]: Use 'modify-inputs'.
2021-11-18 12:47:49 +01:00
Ludovic Courtès
ffcf4ea9ab
gnu: qgpgme: Depend on a newer GnuPG.
This addresses a test failure in 'testSymmetricEncryptDecrypt':

  FAIL!  : EncryptionTest::testSymmetricEncryptDecrypt() 'QString::fromUtf8(plainText) == QStringLiteral("Hello symmetric World")' returned FALSE. ()
     Loc: [t-encrypt.cpp(188)]

The failure was apparently due to gpg asking for a passphrase for
symmetric decryption.

* gnu/packages/gnupg.scm (gnupg-2.2.32): New variable.
(qgpgme)[native-inputs]: Use it.
2021-11-18 12:38:58 +01:00
Ludovic Courtès
1db174a3ad
gnu: ghc: Rely on a fixed version of Git.
This makes the derivation of ghc equivalent to that found in
e55547bf70.

* gnu/packages/haskell.scm (ghc-8.8)[native-inputs]: Change GIT to
GIT/FIXED.
(ghc-8.10)[native-inputs]: Change GIT-MINIMAL to GIT-MINIMAL/FIXED.
* gnu/packages/version-control.scm (git/fixed): New variable.
2021-11-18 11:39:40 +01:00
Kaelyn Takata
d28a28ff53
gnu: sbcl-cl-webkit: Update to 3.4.0.
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.4.0, bringing in
  support for libwebkit2gtk-4.1 from webkit 2.34.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 09:58:49 +01:00
Jack Hill
9322b4d30d
gnu: gnome-screenshot: Fix build with Meson 0.60.0.
* gnu/packages/patches/gnome-screenshot-meson-0.60.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-screenshot)[patches]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 09:53:16 +01:00
Nicolas Goaziou
039c3848c3
gnu: wireshark: Update to 3.4.10.
* gnu/packages/networking.scm (wireshark): Update to 3.4.10.
2021-11-18 09:18:41 +01:00
Nicolas Goaziou
f4aa543f74
gnu: emacs-elfeed-score: Update to 1.2.0.
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.0.
2021-11-18 09:13:22 +01:00
zimoun
7537ec816f
gnu: coq-stdpp: Adjust '#:make-flags'.
* gnu/packages/coq.scm (coq-stdpp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:30:41 +01:00
zimoun
4423caece6
gnu: coq-equations: Adjust '#:make-flags'.
* gnu/packages/coq.scm (coq-equations)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:25:38 +01:00
zimoun
5d7d64ff85
gnu: coq-autosubst: Adjust '#:make-flags'.
* gnu/packages/coq.scm (coq-autosubst)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:22:21 +01:00
zimoun
7b93c6d777
gnu: coq-mathcomp: Adjust '#:make-flags'.
* gnu/packages/coq.scm (coq-mathcomp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:08:08 +01:00
zimoun
2d60af4d6d
gnu: Add coq-semantics.
* gnu/packages/coq.scm (coq-semantics): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 04:08:00 +01:00
Vagrant Cascadian
e930d4a747
gnu: perl-tie-handle-offset: Fix typo.
* gnu/packages/perl.scm (perl-tie-handle-offset)[description]: Fix "This
  module" typo.
2021-11-17 17:46:13 -08:00
Vagrant Cascadian
67900b9555
gnu: perl-business-ismn: Fix typo.
* gnu/packages/perl.scm (perl-business-ismn)[description]: Fix "This module"
  typo.
2021-11-17 17:46:05 -08:00
Vagrant Cascadian
e52032ac1d
gnu: perl-business-issn: Fix typo.
* gnu/packages/perl.scm (perl-business-issn)[description]: Fix "This module"
  typo.
2021-11-17 17:46:01 -08:00
Vagrant Cascadian
f4f93b38aa
gnu: perl-business-isbn: Fix typo.
* gnu/packages/perl.scm (perl-business-isbn)[description]: Fix "This module"
  typo.
2021-11-17 17:45:53 -08:00
Vagrant Cascadian
8f6ac12fe4
gnu: perl-test-dir: Fix typo.
* gnu/packages/perl-check.scm (perl-test-dir)[description]: Fix "This module"
  typo.
2021-11-17 17:45:49 -08:00
Vagrant Cascadian
e782bb901b
gnu: python-sgmllib3k: Fix typo.
* gnu/packages/python-xyz.scm (python-sgmllib3k)[description]: Fix "This
  package" typo.
2021-11-17 17:45:45 -08:00
Vagrant Cascadian
fb1cd494d7
gnu: rust-fever-api-0.2: Fix typo.
* gnu/packages/crates-io.scm (rust-fever-api-0.2)[description]: Fix "This
  package" typo.
2021-11-17 17:45:38 -08:00
Vagrant Cascadian
747403aca5
gnu: perl-test-nowarnings: Fix typo.
* gnu/packages/perl-check.scm (perl-test-nowarnings)[description]: Fix "This
  module" typo.
2021-11-17 17:45:21 -08:00
Tobias Geerinckx-Rice
407594d21b
gnu: foo2zjs: Use archived home page.
* gnu/packages/cups.scm (foo2zjs)[home-page]: Link to the Web Archive'd
URL.
2021-11-18 01:12:21 +01:00
Tobias Geerinckx-Rice
90c524c94e
gnu: sg3-utils: Omit static library.
* gnu/packages/scsi.scm (sg3-utils)[arguments]: Add "--disable-static"
to #:configure-flags.
2021-11-18 01:12:15 +01:00
Tobias Geerinckx-Rice
f41fbda9db
gnu: sg3-utils: Update to 1.47.
* gnu/packages/scsi.scm (sg3-utils): Update to 1.47.
2021-11-18 01:08:30 +01:00
Ludovic Courtès
cdb0e04a76
gnu: python-sgmllib3k: Remove redundant definition.
* gnu/packages/python-xyz.scm (python-sgmllib3k): Adjust description and
remove same-named definition that provided version 1.0.0.
2021-11-18 00:00:16 +01:00
Ludovic Courtès
669d150f48
gnu: graphene: Depend on a fixed version of 'git-minimal'.
* gnu/packages/version-control.scm (git-minimal/fixed): New variable.
* gnu/packages/gtk.scm (graphene)[native-inputs]: Use it instead of
GIT-MINIMAL.
2021-11-17 23:59:09 +01:00
Marius Bakke
e3f70c947f
gnu: ungoogled-chromium: Update to 96.0.4664.45-0.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M96.
(%chromium-version): Set to 96.0.4664.45.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-11-17 23:57:52 +01:00
Marius Bakke
b432cd1189
gnu: libtorrent-rasterbar: Update to 1.2.14.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.2.14.
[source](uri): Adjust tag name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.  Override the check phase to fake the time
for one test, and disable another.
[native-inputs]: Add LIBFAKETIME.
2021-11-17 23:57:52 +01:00
Ludovic Courtès
e77df67cc2
gnu: libsoup: Depend on a fixed version of Samba.
This avoids big rebuilds when Samba is upgraded.

* gnu/packages/samba.scm (samba/fixed): New variable.
* gnu/packages/gnome.scm (libsoup-minimal)[inputs]: Use it instead of
SAMBA.
2021-11-17 23:57:49 +01:00
Ludovic Courtès
3a317f7476
Merge branch 'master' into core-updates-frozen 2021-11-17 23:43:14 +01:00
Foo Chuan Wei
94fbcf7b78
gnu: Add rcs-blame.
* gnu/packages/version-control.scm (rcs-blame): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:59 +01:00
Foo Chuan Wei
b737607c54
gnu: rcs: Install rcsfreeze.
* gnu/packages/version-control.scm (rcs): Install rcsfreeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Josselin Poiret
7c4142628a
gnu: system: Improve location of some configuration warnings.
* gnu/bootloader.scm (%warn-target-field-deprecation): Remove it.
* gnu/bootloader.scm (warn-target-field-deprecation): Use
define-with-syntax-properties.
* gnu/system.scm (ensure-setuid-program-list): Ditto.  Also rename the
'location' variable to 'properties'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Josselin Poiret
346d2f6488
diagnostics: Add syntax to capture arguments' syntax-properties.
* guix/diagnostics.scm (define-with-syntax-properties): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Rostislav Svoboda
fa67d6eef6
doc: Improve wording for param spec of ./configure.
* doc/contributing.texi (Running Guix Before It Is Installed): Writing "Do
<this>. But it won't work unless ..." is a bad practice.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Philip McGrath
cb768f3860
gnu: tidy-html: Update to 5.8.0.
* gnu/packages/web.scm (tidy-html): Update to 5.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Xinglu Chen
f5fc395ab4
scripts: home: Make ‘guix home import’ write home-configuration.scm.
* guix/scripts/home.scm (process-command): Populate ‘home-configuration.scm’
  in the destination directory instead of printing to stdout.
* doc/guix.texi (Declaring the Home Environment): Adjust accordingly.
(Invoking guix home): Likewise.

Suggested-by: Ludovic Courtès <ludo@gnu.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:58 +01:00
Michael Rohleder
609066e996
gnu: xfce4-whiskermenu-plugin: Update to 2.6.1.
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
Michael Rohleder
7fe5742e03
gnu: ristretto: Update to 0.12.0.
* gnu/packages/xfce.scm (ristretto): Update to 0.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
Michael Rohleder
538a755341
gnu: xfce4-cpugraph-plugin: Update to 1.2.5.
* gnu/packages/xfce.scm (xfce4-cpugraph-plugin): Update to 1.2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
jgart
5a6af48408
gnu: shellcheck: Update to 0.8.0.
* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00
Xinglu Chen
77483d6b61
gnu: perl-inline-c: Patch paths to ‘make’.
* gnu/packages/perl.scm (perl-inline-c)[arguments]<#:phases>{patch-paths}: New
  phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-17 23:05:57 +01:00