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6661 commits

Author SHA1 Message Date
Ludovic Courtès
64cb064c0c gnu: python-wrapper: Append "-wrapper" to the underlying package name.
Reported by Federico Beffa <beffa@ieee.org>.

* gnu/packages/python.scm (wrap-python3): Change the default value of
'name' to include the name of PYTHON.  This disambiguates between
'python-minimal-wrapper' and 'python-wrapper'.
2015-12-22 22:24:41 +01:00
Ludovic Courtès
53088d0045 gnu: commencement: Build Bison deterministically.
Before that entries in liby.a would contain the build time.

* gnu/packages/commencement.scm (bison-boot1): Add #:make-flags.
2015-12-19 00:02:37 +01:00
Ludovic Courtès
f1e0c85ad2 gnu: commencement: Build the final Bash with "bison-boot1".
This removes a round of Bison + Flex + M4 + Perl rebuild.

* gnu/packages/commencement.scm (bash-final): Add 'native-inputs'
field pointing to BISON-BOOT1.
2015-12-18 23:57:11 +01:00
Ludovic Courtès
32243bfb57 gnu: commencement: Avoid redundant Perl rebuild.
This removes a redundant (yet different) "perl-boot0" node from the
early derivation graph.

* gnu/packages/commencement.scm (bison-boot1): Move 'native-inputs'
field to the final package.  Previously PERL-BOOT0 got rebuilt with
%BOOT0-INPUTS, leading to a different derivation.
(static-bash-for-glibc): Likewise.
2015-12-18 23:53:00 +01:00
Ludovic Courtès
09964b4fc6 gnu: commencement: Add "-boot0" to early packages.
* gnu/packages/commencement.scm (diffutils-boot0)[name]: New field.
* gnu/packages/commencement.scm (findutils-boot0, file-boot0,
perl-boot0): Change 'name' field to include "-boot0".
2015-12-18 22:19:07 +01:00
Ludovic Courtès
009b53fd1c gnu: gcc: Prefer language-specific variables over 'CPATH'.
Suggested by Andy Wingo <wingo@igalia.com>.
Fixes <http://bugs.gnu.org/22186>.

* gnu/packages/gcc.scm (gcc-4.7)[native-search-paths]: Remove 'CPATH';
add 'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH' instead.
* gnu/packages/gcc.scm (custom-gcc): Add 'search-paths' parameter and
honor it.
(%generic-search-paths): New variable.
(gfortran-4.8, gfortran-4.9, gfortran, gfortran-5, gccgo-4.8): Pass
%GENERIC-SEARCH-PATHS to 'custom-gcc'.
(gcj)[native-search-paths]: New field.
(gcc-objc-4.8, gcc-objc++-4.8): Use 'OBJC_INCLUDE_PATH' and
'OBJCPLUS_INCLUDE_PATH', respectively.
2015-12-18 21:38:49 +01:00
Ludovic Courtès
8309c3899a gnu: commencement: Use GMP 6.0.0a for bootstrapping.
* gnu/packages/multiprecision.scm (gmp-6.0): New variable.
* gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it.
* gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated
from before e414a7d.
* gnu-system.am (dist_patch_DATA): Add it.
2015-12-18 18:38:22 +01:00
Ludovic Courtès
c5b65f7e2b gnu: glibc: Remove timestamp from 'nscd' binary.
This makes libc bit-for-bit reproducible per '--rounds=2'.

* gnu/packages/base.scm (glibc)[arguments] <pre-configure>: Remove
__DATE__ and __TIME__ from nscd_stat.c.
2015-12-16 22:05:30 +01:00
Ludovic Courtès
6042f40bfa gnu: pcre: Add "doc" output.
* gnu/packages/pcre.scm (pcre)[outputs]: New field.
2015-12-15 23:35:09 +01:00
Ludovic Courtès
0573bb5e61 gnu: util-linux: Do not build static libraries.
* gnu/packages/linux.scm (util-linux)[arguments]: Pass --disable-static.
2015-12-15 23:28:29 +01:00
Ludovic Courtès
d7170f449c gnu: gettext: Add "doc" output.
* gnu/packages/gettext.scm (gnu-gettext)[outputs]: New field.
2015-12-15 23:12:20 +01:00
Ludovic Courtès
27ec9624ca gnu: ncurses: Add "doc" output.
* gnu/packages/ncurses.scm (ncurses)[outputs]: New field.
[arguments] <configure>: Replace standard 'configure' phase.
<remove-shebang-phase>: Remove "mandir=" line from 'ncursesw6-config'.
2015-12-15 23:02:51 +01:00
Ludovic Courtès
de6d9f4553 gnu: ncurses: Add 'TERMINFO_DIRS' search path variable.
* gnu/packages/ncurses.scm (ncurses)[native-search-paths]: New field.
2015-12-15 22:27:31 +01:00
Ludovic Courtès
4d28b97c46 gnu: bash: Add "doc" output.
* gnu/packages/bash.scm (bash)[outputs]: Add "doc" output.
2015-12-15 22:22:59 +01:00
Ludovic Courtès
304e4f5135 gnu: grep: Add missing dependency on Perl.
* gnu/packages/base.scm (grep)[native-inputs]: New field.
* gnu/packages/commencement.scm (grep-final): Likewise.
2015-12-15 18:04:28 +01:00
Ludovic Courtès
a2a9bba43c gnu: bash: Update to patch level 42.
* gnu/packages/bash.scm (%patch-series-4.3): Add patches 40 to 42.
2015-12-15 17:59:49 +01:00
Ludovic Courtès
775e6fe456 gnu: commencement: Initial Texinfo uses initial Perl.
* gnu/packages/commencement.scm (texinfo-boot0)[inputs]: Use
PERL-BOOT0.
2015-12-13 11:35:53 +01:00
Ludovic Courtès
4187fe750f gnu: perl: Build deterministically, and make byproducts deterministic.
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.

* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
2015-12-13 11:28:54 +01:00
Ludovic Courtès
4de3507483 gnu: perl: Update to 5.22.0.
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0.  Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name.  Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-12-13 11:28:54 +01:00
Andreas Enge
4165fda29d gnu: gmp: Disable parallel tests.
* gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
2015-12-12 14:40:37 +01:00
Ludovic Courtès
e82e55e58c Merge branch 'master' into core-updates 2015-12-12 11:48:46 +01:00
Andreas Enge
e35dff9733 gnu: numactl: Update to 2.0.11.
* gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11.
  [native-inputs]: Drop autotools.
  [arguments]: Drop phase calling autogen.sh.
2015-12-12 10:20:30 +01:00
Mark H Weaver
798697f673 gnu: wget: Update to 1.17.1.
* gnu/packages/wget.scm (wget): Update to 1.17.1.
2015-12-11 18:31:50 -05:00
Ludovic Courtès
98bd851ee8 gnu: gcc: Use the system zlib.
* gnu/packages/gcc.scm (gcc-4.7) <configure-flags>: Pass
'--with-system-zlib'.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove
'--with-system-zlib' from the configure flags.
* gnu/packages/commencement.scm (zlib-final): New variable.
(gcc-final)[arguments]: Add ZLIB-FINAL to #:allowed-references.
Pass -L and -Wl,-rpath for zlib in LDFLAGS, as a configure flag.
[inputs]: Add LD-WRAPPER-BOOT3 and ZLIB-FINAL.
2015-12-11 23:49:10 +01:00
Ludovic Courtès
52cfd8cb54 gnu: gcc-final: Remove unnecessary CPPFLAGS.
* gnu/packages/commencement.scm (gcc-final)[arguments]: Remove
unnecessary CPPFLAGS from #:make-flags.
2015-12-11 23:42:39 +01:00
Ricardo Wurmus
f7f55db8f6 gnu: Move sparsehash to datastructures module.
* gnu/packages/crypto.scm (sparsehash): Move variable to...
* gnu/packages/datastructures.scm: ...new file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-12-11 15:59:20 +01:00
Ricardo Wurmus
ca3476cd6c gnu: Add r-lattice.
* gnu/packages/statistics.scm (r-lattice): New variable.
2015-12-11 15:44:07 +01:00
Ricardo Wurmus
2a40f76389 gnu: Add r-gridbase.
* gnu/packages/statistics.scm (r-gridbase): New variable.
2015-12-11 15:44:07 +01:00
Ricardo Wurmus
60a9d3d0ac gnu: Add r-plotrix.
* gnu/packages/statistics.scm (r-plotrix): New variable.
2015-12-11 15:44:07 +01:00
Ricardo Wurmus
03af370f6e gnu: Add r-readr.
* gnu/packages/statistics.scm (r-readr): New variable.
2015-12-11 15:44:07 +01:00
Ricardo Wurmus
62141c07f7 gnu: Rename r-data.table to r-data-table.
* gnu/packages/statistics.scm (r-data.table): Rename variable ...
(r-data-table): ... to this.
[description]: Clarify relation to data.frame.
[license]: Use correct license.
2015-12-11 15:44:07 +01:00
Ben Woodcroft
5f7e17bef7 gnu: Add snap-aligner.
* gnu/packages/bioinformatics.scm (snap-aligner): New variable.
2015-12-11 14:34:51 +01:00
Efraim Flashner
9a41f4439d gnu: python-certifi: Update to 2015.11.20.1.
* gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1.
[source]: Change to pypi syntax.
2015-12-11 15:12:39 +02:00
Efraim Flashner
2e4c54573f gnu: gnumeric: Add python scripting support.
* gnu/packages/gnome.scm (gnumeric): Do it.
[inputs]: Add python2, python2-pygobject-2.
2015-12-11 14:18:10 +02:00
Efraim Flashner
7bcbd40dc8 gnu: gnumeric: Update to 1.12.24.
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.24.
[inputs]: Add librsvg, libxslt.
[arguments]: Use "modify-phases" syntax.
2015-12-11 14:18:10 +02:00
Efraim Flashner
8cabd349b4 gnu: goffice: Update to 0.10.24.
* gnu/packages/gnome.scm (goffice): Update to 0.10.24.
2015-12-11 14:18:10 +02:00
Efraim Flashner
24a78aa600 gnu: gvfs: Update to 1.26.2.
* gnu/packages/gnome.scm (gvfs): Update to 1.26.2.
[inputs]: Add gcr.
2015-12-11 14:18:10 +02:00
Mark H Weaver
7534370435 gnu: linux-libre: Update to 4.3.2.
* gnu/packages/linux.scm (linux-libre): Update to 4.3.2.
  [native-inputs]: Add openssl.
* gnu/packages/linux-libre-x86_64.conf,
  gnu/packages/linux-libre-i686.conf: Update for 4.3.x,
  based on <https://jxself.org/git/kernel-configs.git>.
2015-12-11 00:30:38 -05:00
Efraim Flashner
5d69165797 gnu: python-requests: Update to 2.8.1.
* gnu/packages/python.scm (python-requests): Update to 2.8.1.
[native-inputs]: Move python-setuptools here.
[inputs]: Remove python-certifi.
[propagated-inputs]: Add python-py, python-pytest, python-pytest-cov,
python-wheel.
[arguments]: Enable tests.
2015-12-10 20:24:11 +02:00
Efraim Flashner
addc808ddc gnu: Add python-wheel.
* gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
2015-12-10 20:24:11 +02:00
Efraim Flashner
358c3d612b gnu: Add python-pytest-cov.
* gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New
variables.
2015-12-10 20:24:11 +02:00
Roel Janssen
e522d84035 gnu: Add libconfig.
* gnu/packages/textutils.scm (libconfig): New variable.
2015-12-10 16:27:50 +01:00
Efraim Flashner
b01bbbcf3d gnu: python-pytz: Update to 2015.7.
* gnu/packages/python.scm (python-pytz): Update to 2015.7.
[source]: Change uri to pypi's location.
[home-page]: Change to new website.
[license]: Change to expat.
2015-12-10 16:09:16 +02:00
Ricardo Wurmus
16414017f3 gnu: ghc-cryptonite: Update description.
* gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly
  technical package description.
2015-12-10 14:40:18 +01:00
Ben Woodcroft
e815c094f7 gnu: python-biopython, python2-biopython: Update to 1.66.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66.
[source]: Use PyPi instead of biopython.org.
2015-12-10 14:35:56 +01:00
Ricardo Wurmus
85538709f1 gnu: Add ghc-pandoc.
* gnu/packages/haskell.scm (ghc-pandoc): New variable.
2015-12-10 14:34:51 +01:00
Ricardo Wurmus
ac2607a0ce gnu: Add ghc-http-client-tls.
* gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
2015-12-10 14:34:51 +01:00
Ricardo Wurmus
86dd2ce0b2 gnu: Add ghc-connection.
* gnu/packages/haskell.scm (ghc-connection): New variable.
2015-12-10 14:34:51 +01:00
Ricardo Wurmus
dcc5cf1d41 gnu: Add ghc-socks.
* gnu/packages/haskell.scm (ghc-socks): New variable.
2015-12-10 14:34:51 +01:00
Ricardo Wurmus
4f7f06e1a2 gnu: Add ghc-tls.
* gnu/packages/haskell.scm (ghc-tls): New variable.
2015-12-10 14:34:51 +01:00