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Author SHA1 Message Date
Ricardo Wurmus
ba6d9fdcf3
gnu: r-idpmisc: Update to 1.1.20. 
* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
05e2ed8b4f
gnu: r-rngwell: Update to 0.10-6. 
* gnu/packages/cran.scm (r-rngwell): Update to 0.10-6.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
328b5dde4b
gnu: r-bio3d: Update to 2.4-1. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-1.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
5cda9ff27a
gnu: r-parameters: Update to 0.4.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.4.1.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
394fb5f38e
gnu: r-leiden: Update to 0.3.2. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.2.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
725086177a
gnu: r-rhpcblasctl: Update to 0.20-17. 
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
d3f58abbec
gnu: r-threejs: Update to 0.3.3. 
* gnu/packages/cran.scm (r-threejs): Update to 0.3.3.
[native-inputs]: Use jquery 1.12.4 and threejs version r111.
[arguments]: Adjust.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
93e63562fb
gnu: r-farver: Update to 2.0.3. 
* gnu/packages/cran.scm (r-farver): Update to 2.0.3.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
105639ce33
gnu: r-adegenet: Update to 2.1.2. 
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
107c14ba84
gnu: r-cobs: Update to 1.3-4. 
* gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
88bdfd704b
gnu: r-dorng: Update to 1.8.2. 
* gnu/packages/cran.scm (r-dorng): Update to 1.8.2.
[propagated-inputs]: Remove r-pkgmaker.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
9073c464e5
gnu: r-future: Update to 1.16.0. 
* gnu/packages/cran.scm (r-future): Update to 1.16.0.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6c6d051322
gnu: r-rmpfr: Update to 0.8-1. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1.
[inputs]: Add gmp.
[native-inputs]: Add pkg-config.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6378827a71
gnu: r-gmp: Update to 0.5-13.6. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
e99caf8a4c
gnu: r-afex: Update to 0.26-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.26-0.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
5b959414e0
gnu: r-gh: Update to 1.1.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.1.0.
[propagated-inputs]: Add r-cli.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
4a7e857617
gnu: r-sjplot: Update to 2.8.2. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2.
[propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr,
r-modelr, and r-psych.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a4bc993f7b
gnu: r-effectsize: Update to 0.1.1. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
d56026a85f
gnu: r-performance: Update to 0.4.3. 
* gnu/packages/cran.scm (r-performance): Update to 0.4.3.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
5c61d3e5b5
gnu: r-bayestestr: Update to 0.5.1. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
3575a16b7f
gnu: r-sjstats: Update to 0.17.8. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8.
[propagated-inputs]: Add r-effectsize.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6cdd12542a
gnu: r-survey: Update to 3.37. 
* gnu/packages/cran.scm (r-survey): Update to 3.37.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a6494403b3
gnu: r-magick: Update to 2.3. 
* gnu/packages/cran.scm (r-magick): Update to 2.3.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
a82e617bf8
gnu: r-sjlabelled: Update to 1.1.2. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2.
[propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
8958b37eb8
gnu: r-factominer: Update to 2.1. 
* gnu/packages/cran.scm (r-factominer): Update to 2.1.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
addf7bc2b1
gnu: r-leaps: Update to 3.1. 
* gnu/packages/cran.scm (r-leaps): Update to 3.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
c23b40335d
gnu: r-vctrs: Update to 0.2.2. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2.
[propagated-inputs]: Remove r-backports and r-zeallot.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
8a8e296406
gnu: r-tsp: Update to 1.1-8. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-8.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
485b9cea5a
gnu: r-xts: Update to 0.12-0. 
* gnu/packages/cran.scm (r-xts): Update to 0.12-0.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
e5b38da1cc
gnu: r-broom: Update to 0.5.4. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.4.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
fde9fc4871
gnu: r-lpsolve: Update to 5.6.15. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
0be161720c
gnu: r-prettyunits: Update to 1.1.1. 
* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
6e27edda2c
gnu: r-rgooglemaps: Update to 1.4.5.2. 
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
f0eecc6be9
gnu: r-callr: Update to 3.4.1. 
* gnu/packages/cran.scm (r-callr): Update to 3.4.1.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
c6b4b4e719
gnu: r-diversitree: Update to 0.9-13. 
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13.
 2020-01-27 16:33:27 +01:00
Ricardo Wurmus
fd6412cd2c
gnu: r-metap: Update to 1.3. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
 2020-01-27 16:33:27 +01:00
Ludovic Courtès
5e61de2421
gnu: python-testpath: Remove incorrect #:imported-modules. 
Fixes <https://bugs.gnu.org/39298>.
Reported by Clément Lassieur <clement@lassieur.org>
and Ricardo Wurmus <rekado@elephly.net>.

This pacakge would import (srfi srfi-1) from the host Guile, leading to
build failures when the host Guile is 3.0.

* gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect
 #:imported-modules.
 2020-01-27 14:18:12 +01:00
David Wilson
1f7f16dced
gnu: emacs-org-make-toc: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4
 2020-01-27 04:42:14 -08:00
宋文武
4a0e49279d
gnu: public-inbox: Enable support for background HTTP/NNTP daemons. 
* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server.
 2020-01-27 17:38:49 +08:00
Efraim Flashner
71ffa528ef
gnu: keepassxc: Update to 2.5.3. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3.
 2020-01-27 10:37:35 +02:00
宋文武
47ea2ad196
gnu: s6: Install documentation. 
* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase.
 2020-01-27 11:41:45 +08:00
Julien Lepiller
87858bc526
gnu: ocaml: Switch to ocaml 4.09 by default. 
Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires
the janestreet packages, which cannot be upgraded as no version supports
4.09 and 4.07 at the same time. Moreover, newer versions of the
janestreet packages have a different dependency graph, which will
require a whole new set of packages. We cannot simply use
package-with-ocaml4.07 on them.

* gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen)
(ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri)
(ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed)
(ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley)
(ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp)
(ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare)
(ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv)
(ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf)
(ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench)
(ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value)
(ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional)
(ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert)
(ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv)
(ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane)
(ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core)
(ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ...
(ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex)
(ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri)
(ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width)
(ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop)
(ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin)
(ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp)
(ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib)
(ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib)
(ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv)
(ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf)
(ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate)
(ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep)
(ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message)
(ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp)
(ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert)
(ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style)
(ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot)
(ocaml4.07-ppx-jane, ocaml4.07-splittable-random)
(ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core)
(ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3)
(ocaml4.07-lacaml): ... to this and use ocaml 4.07.
(bap, unison): Use ocaml-4.07.
* gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07.
 2020-01-27 03:56:06 +01:00
Julien Lepiller
1e8da4cdef
guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml. 
* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune
argument and add it to transformed packages when relevant.
 2020-01-27 03:55:52 +01:00
Julien Lepiller
0ccd9463ec
gnu: Add ocaml4.07-dune. 
* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable.
 2020-01-27 03:55:42 +01:00
Julien Lepiller
73c26d5729
gnu: Add ocaml4.07-lablgtk. 
* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable.
(lablgtk)[properties]: Add variant.
 2020-01-27 03:55:27 +01:00
Julien Lepiller
7a4780ce9d
gnu: ocambuild: Update to 0.14.0. 
* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0.
[build-system]: Use ocaml-build-system.
 2020-01-27 03:54:52 +01:00
Kei Kebreau
1ef71f5225
gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable. 
Without setting this path variable, gtk+ must be installed in the user's
profile for pcsxr's GUI to work.

* gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and
return #t from 'cd-subdir' and 'fix-cdio-lookup' phases.
 2020-01-26 19:12:22 -05:00
Marius Bakke
4144eb195c
gnu: sicp: Remove unused module import. 
* gnu/packages/scheme.scm (sicp)[arguments]: Do not import (srfi srfi-1).
 2020-01-27 00:47:57 +01:00
Nicolas Goaziou
2e4ea249a1
gnu: emacs-org-contrib: Update to 20200126. 
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20200126.
 2020-01-27 00:02:34 +01:00
Nicolas Goaziou
406c7bc6cd
gnu: emacs-org: Update to 9.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.2.
 2020-01-26 23:58:23 +01:00