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Author SHA1 Message Date
Efraim Flashner
6d8dd5bad7
gnu: vcflib: Use shared libraries. 
* gnu/packages/bioinformatics.scm (vcflib)[source]: Add patch. Add
snippet to adjust files for new locations.
[inputs]: Add fastahack, smithwaterman, tabixpp, xz.
[native-inputs]: Add pkg-config. Remove the package-source of fastahack,
fsom, smithwaterman, tabixpp.
[arguments]: Remove make-flags. Add custom phase to add the output lib
directory to the rpath. Adjust custom 'unpack-submodule-sources for the
change in native-inputs. Adjust custom 'install phase to also install
libraries and headers.
* gnu/packages/patches/vcflib-use-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-08-27 18:18:55 +03:00
Efraim Flashner
4bbcbe93cd
gnu: fastahack: Install pkgconfig file. 
* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Adjust custom
'install phase to add fastahack.pc.
 2020-08-27 18:09:28 +03:00
Efraim Flashner
f075bf09bd
gnu: fastahack: Build and install shared library and headers. 
* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Add phase to
build PIE objects. Add custom phase to build dynamic library. Adjust
custom 'install phase to install shared library and headers.
 2020-08-27 18:08:13 +03:00
Efraim Flashner
5c78997188
gnu: smithwaterman: Install pkgconfig file. 
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Adjust
custom 'install phase to add smithwaterman.pc file.
 2020-08-27 18:06:25 +03:00
Efraim Flashner
afa352223f
gnu: smithwaterman: Build and install shared library and headers. 
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add custom
phase to build PIE objects. Add custom 'build-dynamic phase to build
dynamic library. Adjust custom 'install phase to install shared library
and headers.
 2020-08-27 18:05:20 +03:00
Efraim Flashner
261bc778b6
gnu: tabixpp: Install pkgconfig file. 
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Adjust custom
'install phase to add tabixpp.pc file.
 2020-08-27 18:03:13 +03:00
Efraim Flashner
35cb1bc527
gnu: tabixpp: Build and install shared library and headers. 
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Adjust custom
'build phase to build shared library. Adjust custom 'install phase to
install libraries and header.
 2020-08-27 18:02:16 +03:00
Mathieu Othacehe
3dd310087a
Revert "gnu: inetutils: Do not refer to canonical coreutils." 
This reverts commit 61560d4bef because it
triggers too many rebuilds.
 2020-08-27 16:33:13 +02:00
Mathieu Othacehe
61560d4bef
gnu: inetutils: Do not refer to canonical coreutils. 
Make sure not to retain a reference to the canonical coreutils package.  The
Guix System closure size would otherwise be increased by including references
to both canonical and non-canonical version of those packages.

* gnu/packages/admin.scm (inetutils)[inputs]: Add "coreutils",
[arguments]: and point to it with PATHDEF_CP variable.
 2020-08-27 16:20:21 +02:00
Mathieu Othacehe
17f168fcad
gnu: isc-dhcp: Do not refer to canonical coreutils. 
Make sure not to retain a reference to the canonical coreutils and sed
packages.  The Guix System closure size would otherwise be increased by
including references to both canonical and non-canonical version of those
packages.

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Add "coreutils" and "sed",
[arguments]: and use them, instead of their canonical counterpart.
 2020-08-27 15:46:24 +02:00
Nicolas Goaziou
ad476912b6
gnu: emacs-modus-vivendi-theme: Update to 0.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-vivendi-theme): Update to 0.12.0.
 2020-08-27 15:34:35 +02:00
Nicolas Goaziou
cba77ea9bd
gnu: emacs-modus-operandi-theme: Update to 0.12.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-operandi-theme): Update to 0.12.0.
 2020-08-27 15:34:28 +02:00
Morgan Smith
3ffceba52d
gnu: Add emacs-auth-source-xoauth2. 
* gnu/packages/emacs-xyz.scm (emacs-auth-source-xoauth2): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-27 15:24:46 +02:00
Andreas Enge
f37e2388d0
gnu: lrslib: Update to 7.1. 
* gnu/packages/maths.scm (lrslib): Update to 7.1.
 2020-08-27 14:53:54 +02:00
Leo Prikler
438c4ee1de
gnu: Add komikku. 
* gnu/packages/gnome.scm (komikku): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:51:16 +02:00
Leo Prikler
355761c2d2
gnu: libhandy: Update to 0.90.0. 
* gnu/packages/gnome.scm (libhandy): Update to 0.90.0.
[source]<url>: Use GNOME gitlab.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:37 +02:00
Leo Prikler
23c68bd915
gnu: Add python-cloudscraper. 
* gnu/packages/python-web.scm (python-cloudscraper): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:37 +02:00
Leo Prikler
c005550769
gnu: Add python-requests-toolbelt-0.9.1. 
* gnu/packages/python-web.scm (python-requests-toolbelt-0.9.1): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:37 +02:00
Leo Prikler
f80b800dbe
gnu: Add python-dateparser. 
* gnu/packages/python-xyz.scm (python-dateparser): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:37 +02:00
Leo Prikler
5f9a9efb69
gnu: Add python-pyparsing-2.4.7. 
* gnu/packages/python-xyz.scm (python-pyparsing-2.4.7): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:37 +02:00
Leo Prikler
6f1784fa5c
gnu: Add python-pure-protobuf. 
* gnu/packages/protobuf.scm (python-pure-protobuf): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 13:48:36 +02:00
Mathieu Othacehe
41a190b8c6
linux-libre: Enable module compression for all versions. 
This is a follow-up of 5fe12be0dd. It enables
module compression for all supported Linux versions.

*  gnu/packages/aux-files/linux-libre/4.14-arm.conf: Enable GZIP module compression.
*  gnu/packages/aux-files/linux-libre/4.14-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.19-arm.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.19-arm64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.4-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.4-x86_64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.9-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/4.9-x86_64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.4-arm.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.4-arm64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.4-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.4-x86_64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.7-arm.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.7-arm64.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.7-i686.conf: Ditto.
*  gnu/packages/aux-files/linux-libre/5.7-x86_64.conf: Ditto.
 2020-08-27 10:41:51 +02:00
Timotej Lazar
7ed319496f
gnu: kodi: Update to 18.8. 
* gnu/packages/kodi.scm (kodi): Update to 18.8.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:30:50 +02:00
Michael Rohleder
64b5aa84ad
gnu: gnome-mines: Update to 3.36.0. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.36.0.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:13:54 +02:00
Michael Rohleder
80260be438
gnu: libdazzle: Update to 3.37.1. 
* gnu/packages/gnome.scm (libdazzle): Update to 3.37.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:11:20 +02:00
Vinicius Monego
0a97b172e5
gnu: Add python-trytond-stock-supply. 
* gnu/packages/tryton.scm (python-trytond-stock-supply): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:10 +02:00
Vinicius Monego
261b5cced5
gnu: Add python-trytond-purchase-request. 
* gnu/packages/tryton.scm (python-trytond-purchase-request): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:10 +02:00
Vinicius Monego
51459b8f2c
gnu: Add python-trytond-purchase. 
* gnu/packages/tryton.scm (python-trytond-purchase): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:10 +02:00
Vinicius Monego
7e32de0f56
gnu: Add python-trytond-account-invoice-stock. 
* gnu/packages/tryton.scm (python-trytond-account-invoice-stock): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:09 +02:00
Vinicius Monego
63c5e70e95
gnu: Add python-trytond-account-invoice. 
* gnu/packages/tryton.scm (python-trytond-account-invoice): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:09 +02:00
Vinicius Monego
0f14b0c98f
gnu: Add python-trytond-account-product. 
* gnu/packages/tryton.scm (python-trytond-account-product): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:09 +02:00
Vinicius Monego
e03024f84a
gnu: Add python-trytond-analytic-account. 
* gnu/packages/tryton.scm (python-trytond-analytic-account): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-08-27 10:09:09 +02:00
Mark H Weaver
6e7bede9be
gnu: xorg-server: Update replacement to 1.20.9 [security-fixes]. 
Includes fixes for CVE-2020-1436, CVE-2020-14345, CVE-2020-14346,
and CVE-2020-14361.

* gnu/packages/xorg.scm (xorg-server/fixed): Update to 1.20.9.
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-08-27 00:13:38 -04:00
Mark H Weaver
2ab8e6067c
gnu: linux-libre@5.7: Update to 5.7.18. 
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.18.
(linux-libre-5.7-pristine-source): Update hash.
(deblob-scripts-5.7): Update to 5.7.18.
 2020-08-26 20:57:32 -04:00
Mark H Weaver
169bbfd652
gnu: linux-libre@5.4: Update to 5.4.61. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.61.
(linux-libre-5.4-pristine-source): Update hash.
(deblob-scripts-5.4): Update to 5.4.61.
 2020-08-26 20:56:27 -04:00
Mark H Weaver
3bcee8c6d3
gnu: linux-libre@4.19: Update to 4.19.142. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.142.
(linux-libre-4.19-pristine-source): Update hash.
(deblob-scripts-4.19): Update to 4.19.142.
 2020-08-26 20:55:34 -04:00
Mark H Weaver
425599fbca
gnu: linux-libre@4.14: Update to 4.14.195. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.195.
(linux-libre-4.14-pristine-source): Update hash.
(deblob-scripts-4.14): Update to 4.14.195.
 2020-08-26 20:54:33 -04:00
Mark H Weaver
d84444dc29
gnu: linux-libre@4.9: Update to 4.9.234. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.234.
(linux-libre-4.9-pristine-source): Update hash.
(deblob-scripts-4.9): Update to 4.9.234.
 2020-08-26 20:53:38 -04:00
Mark H Weaver
f6d2bbfbae
gnu: linux-libre@4.4: Update to 4.4.234. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.234.
(linux-libre-4.4-pristine-source): Update hash.
(deblob-scripts-4.4): Update to 4.4.234.
 2020-08-26 20:52:06 -04:00
Jakub Kądziołka
2ba4574d15
gnu: guix: Update to guix-1.1.0-23.2f458a. 
* gnu/packages/package-management.scm (guix): Update to guix-1.1.0-23.2f458a.
 2020-08-26 23:24:16 +02:00
Jakub Kądziołka
2f458ad713
gnu: guix: Rollback to 1.1.0-22.4b5a6f. 
* gnu/packages/package-management.scm (guix): Rollback to 1.1.0-22.4b5a6f.
 2020-08-26 23:15:59 +02:00
Mark H Weaver
9cbe897d26
gnu: linux-libre: Update to 5.8.4. 
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.4.
(linux-libre-5.8-pristine-source): Update hash.
(deblob-scripts-5.8): Update to 5.8.4.
 2020-08-26 16:01:11 -04:00
Tobias Geerinckx-Rice
d73cfd8916
gnu: perl-text-csv-xs: Update to 1.44. 
* gnu/packages/perl.scm (perl-text-csv-xs): Update to 1.44.
 2020-08-26 21:02:26 +02:00
Tobias Geerinckx-Rice
b6d59b585d
gnu: perl-time-hires: Tweak synopsis. 
* gnu/packages/perl.scm (perl-time-hires)[synopsis]: Tweak.
 2020-08-26 21:02:25 +02:00
Tobias Geerinckx-Rice
0d7c95445c
gnu: perl-time-hires: Update to 1.9764. 
* gnu/packages/perl.scm (perl-time-hires): Update to 1.9764.
 2020-08-26 21:02:25 +02:00
Tobias Geerinckx-Rice
8f94079353
gnu: flatpak: Update to 1.8.2. 
* gnu/packages/package-management.scm (flatpak): Update to 1.8.2.
 2020-08-26 21:02:25 +02:00
Tobias Geerinckx-Rice
312485299d
gnu: mate-system-monitor: Update to 1.24.1. 
* gnu/packages/mate.scm (mate-system-monitor): Update to 1.24.1.
[source]: Hard-code NAME.
 2020-08-26 21:02:24 +02:00
Tobias Geerinckx-Rice
44e4332adc
gnu: mate-screensaver: Update to 1.24.1. 
* gnu/packages/mate.scm (mate-screensaver): Update to 1.24.1.
[source]: Hard-code NAME.
 2020-08-26 21:02:24 +02:00
Tobias Geerinckx-Rice
f9c182adc2
gnu: totem-pl-parser: Update to 3.26.5. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.26.5.
 2020-08-26 21:02:24 +02:00
Tobias Geerinckx-Rice
71dc411b21
gnu: grilo: Update to 0.3.12. 
* gnu/packages/gnome.scm (grilo): Update to 0.3.12.
[source]: Hard-code NAME.
 2020-08-26 21:02:23 +02:00