Commit graph

81883 commits

Author SHA1 Message Date
Leo Famulari
9d32e6cdad
gnu: Restore the correct order of the golang module.
* gnu/packages/golang.scm: Move the Go compilers back to the beginning
of the file.
2021-07-27 12:34:56 -04:00
Ricardo Wurmus
907f835e19
gnu: pigx-rnaseq: Update to 0.0.18.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.18.
2021-08-11 19:33:38 +02:00
Leo Famulari
938d77d972
gnu: linux-libre 4.4: Update to 4.4.280.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.280.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari
b1c97ff60b
gnu: Duplicity: Depend on python-paramiko.
Fixes <https://bugs.gnu.org/49979>.

* gnu/packages/backup.scm (duplicity)[native-inputs]: Add python-paramiko.
2021-07-27 12:34:56 -04:00
iKaSeRo
973842acbc
gnu: Add unclutter-xfixes
* gnu/packages/xdisorg.scm (unclutter-xfixes): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-11 16:35:29 +02:00
Ludovic Courtès
373e7ac4f9
transformations: 'with-patch' works on non-origin sources.
Fixes <https://issues.guix.gnu.org/49697>.
Reported by Philippe Swartvagher <philippe.swartvagher@inria.fr>.

* guix/transformations.scm (patched-source): New procedure.
(transform-package-patches)[package-with-extra-patches]: Use it
when (package-source p) is not an origin.
* tests/transformations.scm ("options->transformation, with-commit +
with-patch"): New test.
2021-08-11 16:35:28 +02:00
Ludovic Courtès
168d107abf
gnu: rocm-opencl-runtime: Shorten patch file name.
This appeases 'guix lint -c patch-file-names'.

* gnu/packages/patches/rocm-opencl-runtime-3.10.0-add-rocclr-include-directories.patch:
Rename to...
* gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch: ... this.
* gnu/packages/rocm.scm (rocm-opencl-runtime)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2021-08-11 16:35:28 +02:00
Ludovic Courtès
9b54559e23
gnu: rocm-opencl-runtime: Use a non-redirecting source URL.
* gnu/packages/rocm.scm (rocm-opencl-runtime)[source]: Use 'home-page'
as the URL; since it lacks the ".git" prefix, that placates 'guix lint'.
2021-08-11 16:35:28 +02:00
Xinglu Chen
d39b95b1c2
gnu: emacs-vertico: Update to 0.14.
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.14.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-11 15:38:02 +02:00
Xinglu Chen
3f4303efde
gnu: emacs-marginalia: Update to 0.8.
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.8.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-11 15:38:02 +02:00
Xinglu Chen
006b9c85f5
gnu: emacs-consult: Update to 0.10.
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.10.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-11 15:38:02 +02:00
Xinglu Chen
d908da107e
gnu: emacs-corfu: Update to 0.11.
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.11.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-11 15:38:01 +02:00
Milkey Mouse
59675fef2f
gnu: python-aiorpcx: Update to 0.22.1.
* gnu/packages/finance.scm (electrum)[inputs]: Use python-aiorpcx-0.18.
* gnu/packages/python-web.scm (python-aiorpcx): Update to 0.22.1.
(python-aiorpcx-0.18): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-08-11 20:42:34 +08:00
Xinglu Chen
a192ea31a0
gnu: emacs-project: Update to 0.6.1.
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.6.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-08-11 20:33:48 +08:00
Xinglu Chen
005c8b4265
gnu: emacs-emms: Update to 7.6.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.6.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-08-11 20:28:16 +08:00
Jonathan Brielmaier
29c5177cc0
gnu: icedove: Update to 78.13.0.
* gnu/packages/gnuzilla.scm (icedove): Update to 78.13.0.
2021-08-11 12:17:25 +02:00
Marius Bakke
2730ed9a0e
gnu: uBlock Origin: Update to 1.37.2.
* gnu/packages/browser-extensions.scm (uassets): Update to 54e217d90.
(ublock-origin): Update to 1.37.2.
2021-08-11 00:41:45 +02:00
Marius Bakke
26d68d4fff
gnu: ungoogled-chromium: Update to 92.0.4515.131-0.4a9534c.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 92.
(%chromium-version): Set to 92.0.4515.131.
(%ungoogled-revision): Set to 92.0.4515.131-1-0-g4a9534c.
(%ungoogled-origin): Update hash.
(ungoogled-chromium-snippet): Remove obsolete substitution and trailing #t.
(ungoogled-chromium)[source]: Update hash.
[arguments]: Remove trailing #t's.
[native-inputs]: Remove PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB.  Add
PYTHON-WRAPPER.
[inputs]: Add LINUX-LIBRE-HEADERS-5.10.
2021-08-11 00:41:45 +02:00
Marius Bakke
207cfa3467
gnu: libcacard: Enable PC/SC support.
* gnu/packages/spice.scm (libcacard)[propagated-inputs]: Add PCSC-LITE.
2021-08-11 00:41:45 +02:00
Mark H Weaver
eb0abba387
gnu: icecat: Update to 78.13.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2021-29980, CVE-2021-29984, CVE-2021-29985,
CVE-2021-29986, CVE-2021-29988, and CVE-2021-29989.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.
2021-08-10 14:16:27 -04:00
Leo Famulari
5e71375361
gnu: Borg: Use bundled msgpack.
This is an old and customized version of msgpack-python.

* gnu/packages/backup.scm (borg)[source]: In the snippet, don't delete the
bundled 'msgpack' directory, and remove the related substition applied to
setup.py.
[arguments]: Remove the 'use-system-msgpack' phase.
[inputs]: Remove 'python-msgpack-transitional'.
2021-07-27 12:35:00 -04:00
Leo Famulari
fdd2f57359
gnu: mit-krb5: Update to 1.18.4 [fixes CVE-2021-36222].
* gnu/packages/kerberos.scm (mit-krb5)[replacement]: New field.
(mit-krb5-1.18.4): New variable.
2021-07-27 12:34:57 -04:00
Milkey Mouse
1e16e1938c
gnu: python-libusb1: Update to 1.9.3.
* gnu/packages/libusb.scm (python-libusb1): Update to 1.9.3.
[inputs], [propagated-inputs]: Change libusb to a propagated-input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:20 +02:00
Ivan Gankevich
224093fb85
gnu: Add task-spooler.
* gnu/packages/task-runners.scm (task-spooler): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:20 +02:00
Ivan Gankevich
e6d0264b82
gnu: sendmail: Install executables to $prefix/sbin and $prefix/bin directories.
Currently "sendmail" installs executables to $PREFIX/usr/sbin and
$PREFIX/usr/bin directories. This patch changes them to $PREFIX/sbin and
$PREFIX/bin respectively. Also this patch fixes broken symlinks in
$PREFIX/bin and updates package definitions that use old sendmail paths.

* gnu/packages/mail.scm (sendmail): Set new paths.
 [arguments]<#:phases>{replace-/usr}: Remove /usr prefix.
 [arguments]<#:phases>{post-install}: Fix broken symlinks
 [arguments]<#:phases>{configure}: Set paths without /usr prefix.
* gnu/packages/mail.scm (claws-mail): Use new sendmail paths.
* gnu/packages/version-control.scm (python-git-multimail): Use new
  sendmail paths.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:19 +02:00
Sarah Morgensen
80fc776a61
etc/committer: Pass command-line arguments to main.
* etc/committer.scm.in: Call main with command line arguments.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:19 +02:00
Sarah Morgensen
73177859bc
etc/committer: Support custom commit messages.
Allow custom change commit messages by supplying a commit message and
optionally a changelog message as arguments.

* etc/committer.scm.in (break-string-with-newlines)
(custom-commit-message): New procedures.
(main)[change-commit-message*]: New sub-procedure. Use them.
(main): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:19 +02:00
Ryan Sundberg
75e117bac7
gnu: rocksdb: set TEST_TMPDIR for faster test i/o.
The rocksdb test can take an egregious amount of time on a spinning HDD.
This will inherit guixbuild's /tmp mount for the rocksdb testing
directory.

* gnu/packages/databases.scm (rocksdb)[arguments]: set TEST_TMPDIR for
check phase

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:18 +02:00
Paul A. Patience
06c11434c9
gnu: dealii-openmpi: Add Trilinos dependency.
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi): New variable.
(dealii-openmpi)[propagated-inputs]: Add trilinos-for-dealii-openmpi.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-10 17:32:18 +02:00
Ludovic Courtès
fa81971cba
store: Add 'map/accumulate-builds' cutoff to address pathological cases.
Fixes <https://bugs.gnu.org/49439>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

Previously, a command such as:

  guix environment pigx-scrnaseq

could lead to unbounded memory growth and could even fail to complete
when some items are missing from the store.  This was because
'map/accumulate-builds' callees would keep making .drv build requests
that were turned into <unresolved> nodes; in this case, there are often
many identical build requests.  Stopping accumulation earlier allows us
to unlock the situation by proceeding with the first few build requests
instead of spinning until we've accumulated all the build requests.

* guix/store.scm (map/accumulate-builds): Define 'accumulation-cutoff'.
Use a loop when iterating over LST and maintain a counter of unresolved
nodes met so far; return when the counter exceeds ACCUMULATION-CUTOFF.
2021-08-10 17:32:18 +02:00
Pierre Langlois
b0a6b1f13c
gnu: mu: Update to 1.6.2.
* gnu/packages/mail.scm (mu): Update to 1.6.2.
[inputs]: Use guile-3.0.
[arguments]: Remove autotools substitutions for guile-2.2.  Update
'patch-bin-sh-in-tests phase to new tests.  Do not return #t in the remaining
phases.
2021-08-10 14:48:46 +01:00
Efraim Flashner
1ac96992fb
gnu: gcompris-qt: Switch to qt-build-system.
* gnu/packages/education.scm (gcompris-qt)[build-system]: Switch from
cmake-build-system to qt-build-system.
[arguments]: Remove custom 'wrap-executable phase.
2021-08-10 16:35:23 +03:00
Efraim Flashner
edbf8272c0
gnu: gcompris-qt: Update to 1.1.
* gnu/packages/education.scm (gcompris-qt): Update to 1.1.
2021-08-10 16:32:53 +03:00
Mathieu Othacehe
53a487e871
scripts: publish: Remove leftover comment.
* guix/scripts/publish.scm (render-narinfo/cached): Remove leftover comment.
2021-08-10 12:00:45 +02:00
Mathieu Othacehe
dc8451c1cd
scripts: publish: Remove unused argument. 2021-08-10 11:51:26 +02:00
Mike Rosset
1fa4485fb0
gnu: python-aiorpcx: Update to 0.18.7.
* gnu/packages/python-web.scm (python-aiorpcx): Update to 0.18.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-10 10:49:00 +03:00
Xinglu Chen
f4bf6165de
gnu: fetchmail: Update to 6.4.21 [fixes CVE-2021-36386].
* gnu/packages/mail.scm (fetchmail): Update to 6.4.21.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-27 12:34:56 -04:00
Ludovic Courtès
7bd5f72918
inferior: 'cached-channel-instance' no longer calls 'show-what-to-build'.
This allows the user of 'cached-channel-instance' to install the build
handler of its choice.  In particular, it allows "guix time-machine" to
install a build notifier with the right options instead of using the
defaults that 'cached-channel-instance' would pass to
'show-what-to-build*'.

* guix/inferior.scm (cached-channel-instance): Remove call to
'show-what-to-build*'.
(inferior-for-channels): Wrap body in 'with-build-handler'.
* guix/scripts/time-machine.scm (guix-time-machine): Use
'with-build-handler'.
2021-08-09 18:14:37 +02:00
Ludovic Courtès
27f00963d3
self: Use default config variable values for derivations.
The value of %localstatedir, %storedir, and %sysconfdir is known to have
no impact on the compilation of the Guix modules.  Thus, explicitly
build those modules against a (guix config) module that uses all the
default values.  That way, a Guix installation that uses different
config values can still benefit from substitutes.

Reported by Ricardo Wurmus.

* guix/self.scm (%default-config-variables): New variable.
(make-config.scm): Add #:config-variables and honor it.
(compiled-guix)[*core-modules*]: Pass #:config-variables to
'make-config.scm'.
2021-08-09 18:14:33 +02:00
Milkey Mouse
30289f4d46
gnu: electrum: Update to 4.1.5.
* gnu/packages/finance.scm (electrum): Update to 4.1.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-09 10:19:59 +03:00
Efraim Flashner
d7ffc535c5
gnu: python-coveralls: Update to 3.2.0.
* gnu/packages/python-check.scm (python-coveralls): Update to 3.2.0.
2021-08-09 10:12:26 +03:00
Lars-Dominik Braun
0a379de324
gnu: rocminfo: Add description.
* gnu/packages/rocm.scm (rocminfo) [description]: Add it.
2021-08-09 09:09:24 +02:00
Lars-Dominik Braun
db7d197b30
gnu: rocminfo: Static references to lsmod and grep.
Fixes usage in a pure environment.

* gnu/packages/rocm.scm (rocminfo) [arguments]: Add #:phases.
2021-08-09 09:09:22 +02:00
Leo Famulari
f476876e5c
gnu: IlmBase and OpenEXR: Update to 2.5.7.
* gnu/packages/graphics.scm (ilmbase): Update to 2.5.7.
2021-07-27 12:34:57 -04:00
Leo Famulari
94b437c6f4
gnu: dav1d: Update to 0.9.1.
* gnu/packages/video.scm (dav1d): Update to 0.9.1.
2021-07-27 12:34:56 -04:00
Leo Famulari
4d28393f2d
gnu: libaom: Update to 3.1.2.
* gnu/packages/video.scm (libaom): Update to 3.1.2.
2021-07-27 12:34:56 -04:00
Leo Famulari
2bc17f6088
gnu: linux-libre 4.4: Update to 4.4.279.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.279.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari
658e173dc9
gnu: linux-libre 4.9: Update to 4.9.279.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.279.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari
9dfb17520a
gnu: linux-libre 4.14: Update to 4.14.243.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.243.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari
5e21e3947c
gnu: linux-libre 4.19: Update to 4.19.202.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.202.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00