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136504 commits

Author SHA1 Message Date
Ricardo Wurmus
38f7662dc5
gnu: r-pathview: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.44.0.

Change-Id: I1b186e58ff9116f403295122f02e03b018de0f1c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
9a0b026184
gnu: r-parody: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-parody): Update to 1.62.0.

Change-Id: I558464136d242e6e6d62974b2b8df324faf5c0f2
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a5fa34dc1
gnu: r-ldblock: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.34.0.

Change-Id: Ia0a9b517faf126ad075b099ed407a8a233080b2a
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
3245af8e57
gnu: r-kegggraph: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.64.0.

Change-Id: I1919e5f27747edc745a7e0c65c71d0126e63bde8
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
a0e8a21ef2
gnu: r-gwastools: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.50.0.

Change-Id: Id076c41a4f2f189af0df10f90ed72a5a69154a68
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
6a24c29ef6
gnu: r-gwascat: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.36.0.

Change-Id: I476740369af4d527f94adc2f06c9af354d49b6fc
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
305ee43427
gnu: r-gviz: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.48.0.

Change-Id: I68a479de59a531aa8ab7b376a69a1766fddeea7d
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
59a8eb9d88
gnu: r-ggbio: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.52.0.

Change-Id: I45c0988944ecdc2dc88f7638723a7fe25e6fcec5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
f2e5f38824
gnu: r-erma: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-erma): Update to 1.20.0.

Change-Id: Ic80ebff0510de24ed5bf8afbf199c06489e7a3f5
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
0a81d3c584
gnu: r-catalyst: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.28.0.

Change-Id: Ic2373881717e43db043347438c7801f4b3d3f7ad
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
269b2e1765
gnu: r-msmstests: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.42.0.

Change-Id: Ibe34483ca14f6f32d3b1066dad637b7a3ca8f65c
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
c2bd727d05
gnu: r-msmseda: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.42.0.

Change-Id: I23422c5a2680af92f5101e84750dcfa694f93dc9
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
86957999bd
gnu: r-biocio: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.14.0.

Change-Id: I5095d4c6ea7ab93645dc8f7326f3688fcc9b11e7
2024-05-08 12:53:39 +02:00
Ricardo Wurmus
4d5be1b038
gnu: r-msfeatures: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.12.0.

Change-Id: Iac6354decbe9d887127c41340d2585b9e1ed0b15
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
10915205bc
gnu: r-mscoreutils: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.16.0.

Change-Id: I85aa872f87fd249b22d91aefff57f99426a92147
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b6e497ee17
gnu: r-delayedmatrixstats: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.26.0.

Change-Id: I7ce26d8e3df2bbac7d9b266072f9f906981a476a
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
bd63b1a1e9
gnu: r-spatialexperiment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.14.0.

Change-Id: Ib35abae88c1566641585d04dc1bddb794d969a6f
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
1d1804e753
gnu: r-sparsematrixstats: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.16.0.

Change-Id: I4c8c6c69be0b1dee2ee39dab4fa54ae04139d27c
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3a9161dd42
gnu: r-sparsearray: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.4.1.

Change-Id: Iab6d481534f68cc171c107a70c1e73a4b89686bc
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b5d4e6a641
gnu: r-scran: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scran): Update to 1.32.0.

Change-Id: I52c93ce19c97f533b9a2b13c54a40488e7e297ba
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
8cc178d752
gnu: r-scater: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-scater): Update to 1.32.0.

Change-Id: I9f2748bf1497164bb3ed6cae329b521565488b4e
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
480444f16a
gnu: r-scuttle: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.14.0.

Change-Id: Ib499f1130708d6455f3539f3d32af5e2be933023
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
b59a84b571
gnu: r-singler: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 2.6.0.

Change-Id: Idd0a8ee8559913c0534e6be46dcf49b3a3c1a2c1
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
e478762c88
gnu: r-singlecellexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.26.0.

Change-Id: Ie7720939014e2e43a90a1c93547492dadc7ab333
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3b9c258247
gnu: r-chromvar: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.26.0.

Change-Id: Ib13a2f5268b9d49898ca428490af0ed83f55ba87
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
fe25e3608b
gnu: r-motifmatchr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.26.0.

Change-Id: I829ce102796a01db25be22eba3b6eeb3dbd07b31
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
aec0563082
gnu: r-maftools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.20.0.

Change-Id: Iad2bb2427a16d8fb4cee3f06a8add4703d38a2df
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
3b55a84885
gnu: r-tfbstools: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.42.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I3fb7797efc408546f3968cf99db6b818bed5da70
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
7f66827659
gnu: r-cner: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I3a4ec39d509b2d747e323f26e1e27a3ad1bb3048
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
a0066612c4
gnu: r-beaddatapackr: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.56.0.

Change-Id: I0df5dc9740ef5a618d5ee63f30236a885f64d5f4
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
5788a467bf
gnu: r-beadarray: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.54.0.

Change-Id: Id76194ba8189f177156220bb16779fe20f6fc6ad
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
e0320b5d04
gnu: r-beachmat: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.20.0.

Change-Id: I2651545a5f210820e5c730a0da498af14d013439
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
4a3bdfdc87
gnu: r-rhdf5lib: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.26.0.

Change-Id: I564c7b363dc1b53231258ddf7aee28859322b144
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
1c7ba57959
gnu: r-hdf5array: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.32.0.
[inputs]: Remove zlib.

Change-Id: Ib1980a75b1a86c279aff4486c9ed234e78dd968c
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
ea5cc8cf19
gnu: r-hitc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.48.0.

Change-Id: Idf5834d1066f6d9012b41a50dbf0fd7288fea8cb
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
47d93b5a72
gnu: r-fithic: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.30.0.

Change-Id: Ic0a0f7e42cf5586488b7b0b0141bc6988f0b73d4
2024-05-08 12:53:38 +02:00
Ricardo Wurmus
a0e09d099f
gnu: r-fishpond: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.10.0.

Change-Id: If118e6dc0fc42ae7b83dc9697de8627bc03560cc
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
612f4acea2
gnu: r-rgraphviz: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.48.0.

Change-Id: I4a75273197bfb156c65a01929488fcb0fdfface7
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
85f8909e12
gnu: r-s4vectors: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.42.0.

Change-Id: Icf31b9dd5636fd7aa32962a52694c79347553d82
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
6f8e2e86d9
gnu: r-s4arrays: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.4.0.

Change-Id: I988fc426af0b86a4a51ebd19e32c925359451ea6
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
5ce7f0fc7d
gnu: r-preprocesscore: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.66.0.

Change-Id: I7900eb76856228194d406a31a7857723da3d6cbe
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
8a5bda7435
gnu: r-icens: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.76.0.

Change-Id: Ia343622426866a980c56b092d1fcf1088820273b
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
134da4611e
gnu: r-m3c: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.26.0.

Change-Id: Id2c7aa0d6841ba2de27e2e71d9ca4ee85500bd47
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
3c811d9bc7
gnu: r-rgreat: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.6.0.

Change-Id: I8ec9065aea86ab4fe7ff659af035441ea5877373
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
09932cf188
gnu: r-pcatools: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.16.0.

Change-Id: I0cdce782ed951fe449618c340571cb0b81a5a434
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
35a8182a32
gnu: r-biodist: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.76.0.

Change-Id: I2cf18df7f608c4eefd46788b12ff4414457a53fa
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
27e7802bff
gnu: r-biocworkflowtools: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.30.0.

Change-Id: Iee8e315cf49003bce01720e96bd589fb0ac92402
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
53634d78c7
gnu: r-biocset: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.18.0.

Change-Id: Ia0adef15c468c8642873bac58e71e3a949af5065
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
fa0676265e
gnu: r-biocor: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.28.0.

Change-Id: I76505cecfe6c8c51ee02ddb4517123dde6bd2db0
2024-05-08 12:53:37 +02:00
Ricardo Wurmus
8646c2c5af
gnu: r-bioconcotk: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.24.0.

Change-Id: Ibbbb8d3c63c6c9d6fd707b6ba54db022c6894593
2024-05-08 12:53:37 +02:00