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4511 commits

Author SHA1 Message Date
Ricardo Wurmus
71f80f5487 gnu: Add python-libsvm. 
* gnu/packages/machine-learning.scm (python-libsvm): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
741115b649 gnu: Add libsvm. 
* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
e0a02cb21f gnu: ngs-sdk: Update to version 1.1.1. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
 2015-06-12 12:57:29 +02:00
Eric Bavier
48d21d6cd6 gnu: ghc: Patch runtime references to /bin/sh. 
* gnu/packages/haskell.scm (ghc)[arguments]: Rename
  'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
  Patch source files that reference /bin/sh.
 2015-06-11 18:55:49 -05:00
Mark H Weaver
dc7b1817f6 Revert "gnu: openssl: Update to 1.0.2b." 
This reverts commit 4f467e33de.
 2015-06-12 01:46:03 -04:00
Mark H Weaver
4f467e33de gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-12 01:25:23 -04:00
Ludovic Courtès
e21adc768e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
  [source]: Add 'file-name' field.
  [native-inputs]: Add HELP2MAN.
 2015-06-11 23:33:32 +02:00
Ludovic Courtès
0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver
b45ce07a8a gnu: gnupg: Update to 2.1.5. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
 2015-06-11 14:39:22 -04:00
宋文武
4510b2da3e gnu: Add librest. 
* gnu/packages/gnome.scm (librest): New variable.
 2015-06-11 23:30:54 +08:00
Mark H Weaver
8b1c8e4e27 gnu: inetutils: Update to 1.9.4. 
* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
 2015-06-11 10:08:01 -04:00
Mark H Weaver
3dbb0e5f8b gnu: qemu: Add fix for CVE-2015-3209. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
 2015-06-10 15:42:16 -04:00
Mark H Weaver
e51943f886 gnu: cups: Update to 2.0.3. 
* gnu/packages/cups.scm (cups): Update to 2.0.3.
 2015-06-10 14:50:28 -04:00
Mark H Weaver
63398a25ba gnu: linux-libre: Update to 4.0.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
 2015-06-10 11:37:37 -04:00
Ludovic Courtès
aea9b23213 install: Really overwrite TARGET/var/guix/profiles/system-1-link. 
* gnu/build/install.scm (populate-root-file-system): Delete system-1-link
  under TARGET, not under /.  Use 'catch' and check for EEXIST instead of
  (false-if-exception (delete-file ...)).
 2015-06-10 10:31:25 +02:00
宋文武
329d13b8ea gnu: mysql: Update to 5.6.25. 
* gnu/packages/databases.scm (mysql): Update to 5.6.25.
  [source]: Use 'version-major+minor'.
  [build-system]: Change to cmake-build-system.  Adjust arguments
  accordingly.
  [inputs]: Add libaio.  Remove procps.  Move perl to 'native-inputs'.
 2015-06-09 18:16:14 +08:00
Mark H Weaver
0705f79c6f gnu: Add proof-general. 
* gnu/packages/ocaml.scm (proof-general): New variable.
 2015-06-08 20:08:50 -04:00
Ludovic Courtès
7acd3439ea install: Omit /root from the binary tarball. 
Suggested by Thomas Schwinge <thomas@codesourcery.com>.

* gnu/system/install.scm (self-contained-tarball): Remove
  "/root/.guix-profile" from the 'tar' arguments.
* doc/guix.texi (Binary Installation): Add a step to create
  ~root/.guix-profile.
 2015-06-08 23:25:51 +02:00
Mark H Weaver
ae9b96c784 gnu: youtube-dl: Update to 2015.06.04.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
 2015-06-08 15:07:30 -04:00
宋文武
c769cf9f2a gnu: evince: Update to 3.16.1, add more inputs. 
* gnu/packages/gnome.scm (evince): Update to 3.16.1.
  [inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.

Co-authored-by: David Hashe <david.hashe@dhashe.com>
 2015-06-08 20:42:31 +08:00
宋文武
faf713b9d0 gnu: geoclue: Update to 2.2.0. 
* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
 2015-06-08 18:02:28 +08:00
Ricardo Wurmus
dbdfe51598 gnu: python-numpy: Build against OpenBLAS. 
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
 2015-06-07 17:30:40 -04:00
Mark H Weaver
716e20a2bc gnu: icecat: Update to 31.7.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
 2015-06-06 08:02:45 -04:00
Mark H Weaver
8850303e76 gnu: tor: Update to 0.2.6.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
  [native-inputs]: Add python-2.
 2015-06-06 00:51:10 -04:00
Ludovic Courtès
24e02c28fb system: 'hosts-file' is now a file-like object. 
Partly fixes <http://bugs.gnu.org/20720>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (default-/etc/hosts): Change 'text-file' to 'plain-file'.
  (maybe-file->monadic): New procedure.
  (operating-system-etc-directory): Use it.
* doc/guix.texi (operating-system Reference, Networking Services): Adjust
  accordingly.
 2015-06-05 22:41:55 +02:00
Ludovic Courtès
847658395e system: 'sudoers' is now a file-like object. 
Partly fixes <http://bugs.gnu.org/20720>
Reported by Alex Kost <alezost@gmail.com>.

* gnu/system.scm (etc-directory): Change default #:sudoers value to a
  'plain-file'.  Don't bind it.  Remove #~#$.
  (maybe-string->file): New procedure.
  (operating-system-etc-directory): Use it.
  (%sudoers-specification): Use 'plain-file'.
* doc/guix.texi (operating-system Reference): Adjust accordingly.
 2015-06-05 20:22:47 +02:00
Ludovic Courtès
97cc51f876 gnu: Add magit-svn. 
* gnu/packages/emacs.scm (magit-svn): New variable.
 2015-06-05 12:13:38 +02:00
Mark H Weaver
1973183b63 gnu: Add coq. 
* gnu/packages/ocaml.scm (coq): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
d6b7b5edec gnu: Add hevea. 
* gnu/packages/ocaml.scm (hevea): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
83f4dc36e2 gnu: Add camlp5. 
* gnu/packages/ocaml.scm (camlp5): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
69b8f08cbd gnu: ocaml: Update to 4.02.1. 
* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
  [source]: Use 'version-major+minor'.  Use .xz tarball.
  [home-page]: Update URI.
  [license]: gpl2 -> lgpl2.0.
  [inputs]: Add libx11, gcc:lib, and zlib.  Remove perl.
  [native-inputs]: New field, with perl and pkg-config.
  [arguments]: In #:modules, remove (srfi srfi-1), add (web server).  Use
  'modify-phases'.  Enable parallel build.  Add 'patch-/bin/sh-references' and
  'prepare-socket-test' phases.  Rename 'check-after-install' phase to
  'check'.  Use 'with-directory-excursion' in 'check' phase.  Remove unused
  keyword arguments from custom phases.
 2015-06-05 00:58:53 -04:00
宋文武
4a79e256f0 gnu: Add devhelp. 
* gnu/packages/gnome.scm (devhelp): New variable.
 2015-06-05 12:46:20 +08:00
宋文武
4becc79273 gnu: guile-opengl: Patch dynamic-link call for 'libGLU' to glu. 
* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
  [arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
  mesa in the 'patch-dynamic-link' phase.
 2015-06-05 12:17:18 +08:00
Andreas Enge
16c62e1fc4 gnu: Add LibreOffice. 
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
  New variables.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-06-04 22:59:18 +02:00
Ludovic Courtès
ad29c6f2e5 gnu: guile-reader: Update to 0.6.1. 
* gnu/packages/guile.scm (guile-reader)[source, version]: Update to 0.6.1.
  [arguments]: Remove #:locale argument.
 2015-06-03 11:47:36 +02:00
Ricardo Wurmus
c0b1909106 gnu: Add Data::Stag. 
* gnu/packages/perl.scm (perl-data-stag): New variable.
 2015-06-03 10:41:21 +02:00
Ricardo Wurmus
458ee7dcf0 gnu: Add IO::String. 
* gnu/packages/perl.scm (perl-io-string): New variable.
 2015-06-03 10:41:13 +02:00
Mark H Weaver
de8a1818fd gnu: gnupg-2.0: Update to 2.0.28. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.28.
 2015-06-02 19:18:29 -04:00
Mark H Weaver
ed8a724b33 gnu: gnu-pw-mgr: Update to 1.4. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.4.  Use .xz tarball.
  Move 'which' to native-inputs.  Add 'autogen' to native-inputs.
 2015-06-02 15:43:34 -04:00
Mark H Weaver
9a59ce2455 gnu: sharutils: Update to 4.15.2. 
* gnu/packages/compression.scm (sharutils): Update to 4.15.2.
 2015-06-02 15:43:34 -04:00
Ricardo Wurmus
e7c097306d gnu: Add HTSlib. 
* gnu/packages/bioinformatics.scm (htslib): New variable.
 2015-06-02 14:30:14 +02:00
Ricardo Wurmus
132b4c8c23 gnu: ncbi-vdb: Use "i386" instead of "i686" in directory name. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
  "linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
  i686.
 2015-06-02 14:26:14 +02:00
Christopher Allan Webber
93e7199b35 gnu: Add guile-gdbm-ffi. 
* gnu/packages/guile.scm (guile-gdbm-ffi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-05-31 23:44:09 +02:00
Andreas Enge
c687f73110 gnu: avidemux: Add output lib dir to rpath. 
* gnu/packages/video.scm (avidemux): Set -DCMAKE_SHARED_LINKER_FLAGS
    in the call to cmake.
 2015-05-31 23:31:50 +02:00
Ludovic Courtès
97c15a297d gnu: tcsh: Add alternate URL for old tarballs. 
Reported by Alexander Vorobiev <alexander.vorobiev@gmail.com>.

* gnu/packages/tcsh.scm (tcsh)[source]: Add alternate URL.
 2015-05-31 22:39:48 +02:00
David Thompson
98b87b82be gnu: Add ruby-useragent. 
* gnu/packages/ruby.scm (ruby-useragent): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
2cbc105bb3 gnu: Add bundler. 
* gnu/packages/ruby.scm (bundler): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
d4fde1f239 gnu: Add ruby-rspec. 
* gnu/packages/ruby.scm (ruby-rspec): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
4f2a0cac7f gnu: Add ruby-rspec-mocks. 
* gnu/packages/ruby.scm (ruby-rspec-mocks): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
e69620098b gnu: Add ruby-rspec-expectations. 
* gnu/packages/ruby.scm (ruby-diff-lcs-for-rspec, ruby-rspec-expectations):
  New variables.
 2015-05-29 20:05:57 -04:00