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2183 commits

Author SHA1 Message Date
Ricardo Wurmus
81de56479a gnu: Add bedtools 
* gnu/packages/bioinformatics.scm (bedtools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-16 18:17:15 +01:00
Tomáš Čech
b336da21e9 gnu: tmux: Update to 1.9a. 
* gnu/packages/tmux.scm (tmux): Update to 1.9a

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-16 18:17:15 +01:00
Ricardo Wurmus
f3cd952b45 gnu: samtools: disable tests for non-64-bit systems 
* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit
  systems because of an upstream bug in the test data.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-16 18:17:15 +01:00
Mark H Weaver
a142e38e9d gnu: groff: Disable parallel builds. 
* gnu/packages/groff.scm (groff): Disable parallel builds.
 2014-12-16 11:16:54 -05:00
Mark H Weaver
dec7ab5953 gnu: groff: Update to 1.22.3. 
* gnu/packages/groff.scm (groff): Update to 1.22.3.
 2014-12-16 03:28:06 -05:00
Mark H Weaver
a6e818586b gnu: ghostscript: Update to 9.14.0. 
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.14.0.
  Change license to agpl3+.
 2014-12-16 03:08:00 -05:00
Mark H Weaver
6b282cc9fb gnu: lcms: Update to 2.6. 
* gnu/packages/ghostscript.scm (lcms): Update to 2.6.
 2014-12-16 03:07:57 -05:00
Mark H Weaver
9f8552fab5 gnu: icecat: Apply security updates for CVE-2014-{1587,1590,1592,1593,1594}. 
* gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch,
  gnu/packages/patches/icecat-CVE-2014-1590.patch,
  gnu/packages/patches/icecat-CVE-2014-1592.patch,
  gnu/packages/patches/icecat-CVE-2014-1593.patch,
  gnu/packages/patches/icecat-CVE-2014-1594.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat): Add them.
 2014-12-15 20:42:53 -05:00
Tomáš Čech
6cb89466ba gnu: Add bullet. 
* gnu/packages/game-development.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-15 08:09:04 -05:00
宋文武
5a659a489e gnu: Add vala. 
* gnu/packages/gnome.scm (vala): New variable.
 2014-12-15 18:51:30 +08:00
Mark H Weaver
5afbfb9924 gnu: youtube-dl: Update to 2014.12.15. 
* gnu/packages/video.scm (youtube-dl): Update to 2014.12.15.
 2014-12-15 03:36:54 -05:00
Mark H Weaver
bfb8486929 gnu: Add xfce4-battery-plugin. 
* gnu/packages/xfce.scm (xfce4-battery-plugin): New variable.
 2014-12-14 19:46:12 -05:00
Mark H Weaver
d814f921f1 gnu: xfce4-panel: Support panel plugins from other packages. 
* gnu/packages/patches/xfce4-panel-plugins.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xfce.scm (xfce4-panel): Add the patch, and a
  native search path specification for X_XFCE4_LIB_DIRS.
 2014-12-14 19:45:59 -05:00
Federico Beffa
31557440c2 gnu: python-numpy-bootstrap: Reduce matrix size in failing test. 
* gnu/packages/python.scm (python-numpy-bootstrap): Add phase
  'fix-failing-tests.
 2014-12-14 20:01:22 +01:00
John Darrington
de51bf58b9 gnu: Add xdotool. 
* gnu/packages/xdisorg.scm (xdotool): New variable.
 2014-12-14 18:43:22 +01:00
Federico Beffa
c1125a04bb gnu: python-numpy-bootstrap: Make tests verbose. 
* gnu/packages/python.scm (python-numpy-bootstrap): Make tests verbose to
  allow test failure debugging on hydra.
 2014-12-13 09:44:26 +01:00
宋文武
aba42c98b3 gnu: xfconf: Disable parallel tests. 
* gnu/packages/xfce.scm (xfconf): Add 'arguments' field.
 2014-12-13 11:15:03 +08:00
Ricardo Wurmus
4e10a22168 gnu: Add samtools 
* gnu/packages/bioinformatics.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add it

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-13 00:01:06 +01:00
Mark H Weaver
c9d512faac gnu: Add nginx. 
* gnu/packages/web.scm (nginx): New variable.
 2014-12-12 08:57:21 -05:00
Mark H Weaver
90dcf9c8c5 gnu: pcre: Update to 8.36 and enable JIT support. 
* gnu/packages/pcre.scm (pcre): Update to 8.36.  Enable JIT support.
 2014-12-12 08:56:56 -05:00
宋文武
8a3c54e0a1 gnu: Add xfdesktop. 
* gnu/packages/xfce.scm (xfdesktop): New variable.
 2014-12-12 20:50:12 +08:00
宋文武
3a4bfddee7 gnu: Add xfwm4. 
* gnu/packages/xfce.scm (xfwm4): New variable.
 2014-12-12 20:49:07 +08:00
宋文武
aac0380040 gnu: Add thunar-volman. 
* gnu/packages/xfce.scm (thunar-volman): New variable.
 2014-12-12 20:45:50 +08:00
宋文武
5c776d2706 gnu: Add thunar. 
* gnu/packages/xfce.scm (thunar): New variable.
 2014-12-12 20:44:04 +08:00
宋文武
55613927ea gnu: Add xfce4-settings. 
* gnu/packages/xfce.scm (xfce4-settings): New variable.
 2014-12-12 20:41:51 +08:00
宋文武
9a8a040dfe gnu: Add xfce4-session. 
* gnu/packages/xfce.scm (xfce4-session): New variable.
 2014-12-12 20:39:12 +08:00
宋文武
c5c2f9bbb0 gnu: Add xfce4-appfinder. 
* gnu/packages/xfce.scm (xfce4-appfinder): New variable.
 2014-12-12 20:36:44 +08:00
宋文武
3b3a7fe78c gnu: Add xfce4-panel. 
* gnu/packages/xfce.scm (xfce4-panel): New variable.
 2014-12-12 20:35:25 +08:00
宋文武
305bc4cca8 gnu: Add tumbler. 
* gnu/packages/xfce.scm (tumbler): New variable.
 2014-12-12 20:27:04 +08:00
宋文武
7fc3d5f3ec gnu: Add garcon. 
* gnu/packages/xfce.scm (garcon): New variable.
 2014-12-12 20:18:43 +08:00
宋文武
2eb7d77d48 gnu: Add exo. 
* gnu/packages/xfce.scm (exo): New variable.
 2014-12-12 20:16:22 +08:00
宋文武
6cec9818db gnu: Add libxfce4ui. 
* gnu/packages/xfce.scm (libxfce4ui): New variable.
 2014-12-12 20:14:46 +08:00
宋文武
471dbb70f9 gnu: Add xfconf. 
* gnu/packages/xfce.scm (xfconf): New variable.
 2014-12-12 20:13:07 +08:00
宋文武
79c2528ffb gnu: Add libxfce4util. 
* gnu/packages/xfce.scm (libxfce4util): New variable.
 2014-12-12 20:11:11 +08:00
宋文武
62ac2ed9f4 gnu: Add gtk-xfce-engine. 
* gnu/packages/xfce.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-12 20:01:40 +08:00
Ludovic Courtès
180e33e3f2 gnu: freeipmi: Update to 1.4.7. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.4.7.
 2014-12-11 18:02:07 +01:00
Ludovic Courtès
32bcad9709 gnu: wget: Update to 1.16.1. 
* gnu/packages/wget.scm (wget): Update to 1.16.1.
 2014-12-11 18:02:07 +01:00
宋文武
1b5758a65e gnu: gdk-pixbuf: Propagate glib and libpng. 
* gnu/packages/gtk.scm (gdk-pixbuf): Move glib and libpng to
  'propagated-inputs'.
 2014-12-11 19:43:19 +08:00
宋文武
4281d1b6f3 gnu: libxcomposite: Propagate inputs. 
* gnu/packages/xorg.scm (libxcomposite): Move all existing 'inputs'
  to 'propagated-inputs'.
 2014-12-11 19:42:39 +08:00
Federico Beffa
57c3f71632 gnu: Add cffi. 
* gnu/packages/python.scm (python-cffi, python2-cffi): New variables.
 2014-12-10 14:27:44 +01:00
Federico Beffa
6c2cf86edb Revert "gnu: gobject-introspection: Update to 1.42.0 and add new patch." 
This reverts commit 66717243d0.  Several
packages fail to build with the new version.
 2014-12-10 14:25:34 +01:00
Ludovic Courtès
c7e553a309 gnu: Add BBDB. 
* gnu/packages/emacs.scm (bbdb): New variable.
 2014-12-09 23:21:39 +01:00
Ludovic Courtès
71f571588f gnu: emacs: Use 'glib-or-gtk-build-system'. 
Fixes <http://bugs.gnu.org/19138>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/emacs.scm (emacs)[build-system]: Switch to
  GLIB-OR-GTK-BUILD-SYSTEM.
  (emacs-no-x-toolkit): Add 'build-system' field.
 2014-12-09 23:21:39 +01:00
Alex Kost
4a01b30b33 gnu: Move unclutter to (gnu packages xdisorg). 
* gnu/packages/unclutter.scm: Remove.
  (unclutter) Move to...
* gnu/packages/xdisorg.scm (unclutter): ... here.  New variable.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove unclutter file name.
 2014-12-10 00:37:47 +03:00
Alex Kost
1410f342f7 gnu: Move scrot to (gnu packages xdisorg). 
* gnu/packages/scrot.scm: Remove.
  (scrot) Move to...
* gnu/packages/xdisorg.scm (scrot): ... here.  New variable.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove scrot file name.
 2014-12-10 00:37:47 +03:00
Alex Kost
2e88e089da gnu: Add wmctrl. 
* gnu/packages/xdisorg.scm (wmctrl): New variable.
* gnu/packages/patches/wmctrl-64-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-12-10 00:37:46 +03:00
Eric Bavier
426fde9ae1 gnu: Add c-reduce. 
* gnu/packages/debug.scm (c-reduce): New variable.
 2014-12-09 12:02:09 -06:00
Eric Bavier
3e4249ce10 gnu: Add llvm and clang. 
* gnu/packages/llvm.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-09 12:02:08 -06:00
Eric Bavier
043092e80b gnu: Add perl-sys-cpu. 
* gnu/packages/perl.scm (perl-sys-cpu): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
b593600e21 gnu: Add perl-regexp-common. 
* gnu/packages/perl.scm (perl-regexp-common): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
d193ba6d79 gnu: Add perl-getopt-tabular. 
* gnu/packages/perl.scm (perl-getopt-tabular): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
31f3976a21 gnu: Add perl-file-which. 
* gnu/packages/perl.scm (perl-file-which): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
2e66590aad gnu: Add perl-test-script. 
* gnu/packages/perl.scm (perl-test-script): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
c7518b04f0 gnu: Add perl-ipc-run3. 
* gnu/packages/perl.scm (perl-ipc-run3): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
7850f47ac5 gnu: Add perl-probe-perl. 
* gnu/packages/perl.scm (perl-probe-perl): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
63edfca495 gnu: Add perl-exporter-lite. 
* gnu/packages/perl.scm (perl-exporter-lite): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
2aa466247f gnu: Add perl-benchmark-timer. 
* gnu/packages/perl.scm (perl-benchmark-timer): New variable.
 2014-12-09 12:02:08 -06:00
Eric Bavier
8d809faf8c gnu: Add delta. 
* gnu/packages/debug.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-09 12:02:08 -06:00
Eric Bavier
47833c90d5 gnu: Add astyle. 
* gnu/packages/pretty-print.scm (astyle): New variable.
 2014-12-09 12:02:08 -06:00
Federico Beffa
5a4753a699 gnu: gobject-introspection: Define search path for typelib files. 
* gnu/packages/glib.scm (gobject-introspection): Add 'native-search-paths' and
  'search-paths' fields.
 2014-12-09 13:43:03 +01:00
Federico Beffa
66717243d0 gnu: gobject-introspection: Update to 1.42.0 and add new patch. 
* gnu/packages/glib.scm (gobject-introspection): Update to version 1.42.0.
  Add patch 'gobject-introspection-absolute-shlib-path.patch' provided by Luca
  Bruno <lucabru@src.gnome.org> for Nix.
 2014-12-09 13:41:45 +01:00
Federico Beffa
a415f036e8 gnu: Add pycparser. 
* gnu/packages/python.scm (python-pycparser, python2-pycparser): New variables.
 2014-12-09 13:23:59 +01:00
Tomáš Čech
15f5f68656 gnu: Add slock. 
* gnu/packages/dwm.scm (slock): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-09 13:19:47 +01:00
Tomáš Čech
d6e941bc95 gnu: add msmtp 
* gnu/packages/mail.scm (msmtp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-09 13:19:47 +01:00
宋文武
427476d57d gnu: libwnck: Propagate inputs. 
* gnu/packages/gnome.scm (libwnck, libwnck-1): Propagate inputs libxres and
  startup-notification.
 2014-12-09 19:15:07 +08:00
宋文武
fecbf86eaa gnu: Add libwnck. 
* gnu/packages/gnome.scm (libwnck, libwnck-1): New variables.
 2014-12-09 18:50:01 +08:00
宋文武
a693bba135 gnu: Add startup-notification. 
* gnu/packages/xdisorg.scm (startup-notification): New variable.
 2014-12-09 18:50:01 +08:00
Ludovic Courtès
f6d9b3ded7 gnu: Add socat. 
* gnu/packages/socat.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-08 23:29:23 +01:00
Federico Beffa
01480b9e1c gnu: atlas: Remove MIPS from 'supported-systems'. 
* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
 2014-12-08 09:54:34 +01:00
Jason Self
e1bdb56e3b gnu: linux-libre: Update to 3.18 
* gnu/packages/linux.scm (linux-libre): Update to version 3.18.
 2014-12-07 20:52:55 -08:00
Ludovic Courtès
0d6a83390d gnu: python2-py2cairo: Fix 'license' field. 
* gnu/packages/gtk.scm (python2-py2cairo)[license]: Change to a list of
  <license> (was a list of symbols.)
 2014-12-07 12:14:19 +01:00
Alex Kost
4c8425b783 gnu: tzdata: Update to 2014j. 
* gnu/packages/base.scm (tzdata): Update to 2014j.
 2014-12-07 10:03:15 +03:00
宋文武
fa9d665385 gnu: fish: Use /etc as sysconfdir. 
* gnu/packages/fish.scm (fish) [arguments]: Add #:configure-flags.
  [origin]: Add snippet.
 2014-12-07 11:52:22 +08:00
Ludovic Courtès
6036453fff gnu: Add libyubikey and ykclient. 
* gnu/packages/yubico.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-07 00:02:43 +01:00
宋文武
4c8d523f93 gnu: fish: Update to 2.1.1. 
* gnu/packages/fish.scm (fish): Update to 2.1.1.
 2014-12-06 19:09:07 +08:00
Federico Beffa
bb986599e6 gnu: Add scipy. 
* gnu/packages/python.scm (python-scipy, python2-scipy): New variables.
 2014-12-04 16:06:40 +01:00
宋文武
65a056900f gnu: Add dmenu. 
* gnu/packages/dwm.scm (dmenu): New variable.
 2014-12-04 18:51:14 +08:00
Ludovic Courtès
f47f676120 gnu: glib: Update to 2.40.2. 
* gnu/packages/glib.scm (glib): Update to 2.40.2.
 2014-12-03 22:52:19 +01:00
Ludovic Courtès
36d2a3afeb gnu: glib: Work around unreliable GIO test. 
Fixes <http://bugs.gnu.org/18445>.

* gnu/packages/patches/glib-tests-gapplication.patch: New file
* gnu/packages/glib.scm (glib)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-12-03 22:52:19 +01:00
Ludovic Courtès
f2122ed1dc gnu: dbus: Update to 1.8.10. 
* gnu/packages/glib.scm (dbus): Update to 1.8.10.
  (dbus-1.8.10): Remove.
 2014-12-03 22:52:19 +01:00
John Darrington
1567bb1976 gnu: Add tre (including the agrep utility) 
* gnu/packages/tre.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-03 11:14:57 +01:00
Alex Kost
d51cafb041 gnu: emacs: Add autoloads for Emacs packages. 
* gnu/packages/emacs.scm (geiser): Make "geiser-autoloads.el" by
  symlinking "geiser-install.el".
  (emacs-w3m): Make "w3m-autoloads.el" by symlinking "w3m-load.el".
  (emms): Make "emms-autoloads.el" by symlinking "emms-auto.el".
  (paredit): Generate "paredit-autoloads.el".
  (magit): Generate "magit-autoloads.el".
  (emacs-wget): Generate "wget-autoloads.el".
 2014-12-02 22:09:24 +03:00
Ludovic Courtès
ece9b4173b gnu: Add more missing (gnu packages xdisorg) import. 
This is a followup to 3c156c8..

* gnu/packages/qemu.scm, gnu/packages/texlive.scm: Use (gnu packages
  xdisorg).
 2014-12-02 18:29:55 +01:00
Ludovic Courtès
b2b7def1cc gnu: Add missing (gnu packages xdisorg) import. 
This is a followup to 3c156c8..

* gnu/packages/gl.scm: Use (gnu packages xdisorg).
 2014-12-02 17:47:42 +01:00
Ludovic Courtès
6c0e878e68 gnu: Add missing uses of (gnu packages xdisorg). 
This is a followup to 3c156c8.

* gnu/packages/gtk.scm: Use (gnu packages xdisorg).
* gnu/packages/xorg.scm: Likewise.
 2014-12-02 17:16:58 +01:00
Eric Bavier
f4c4513d47 gnu: Add gourmet. 
* gnu/packages/nutrition.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-02 08:35:06 -06:00
Eric Bavier
0b96fb2ac0 gnu: Add python2-pygtk. 
* gnu/packages/gtk.scm (python2-pygtk): New variable.
 2014-12-02 08:35:06 -06:00
Eric Bavier
a1de06b6ab gnu: Add python-pygobject. 
* gnu/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (python-pygobject, python2-pygobject-2): New
  variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
fbcfa73074 gnu: Add python-pycairo. 
* gnu/packages/gtk.scm (python-pycairo, python2-py2cairo): New variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
ea5456c88c gnu: Add python-elib.intl. 
* gnu/packages/python.scm (python-elib.intl, python2-elib.intl): New
  variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
1671c07cc7 gnu: Add python-distutils-extra. 
* gnu/packages/python.scm (python-distutils-extra, python2-distutils-extra):
  New variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
c937562e2f gnu: Add python-pillow. 
* gnu/packages/python.scm (python-pillow, python2-pillow): New variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
94914805c2 gnu: Add python-sqlalchemy. 
* gnu/packages/python.scm (python-sqlalchemy, python2-sqlalchemy): New
  variables.
 2014-12-02 08:35:06 -06:00
Eric Bavier
b88e1b0a62 gnu: python: Add sqlite input. 
* gnu/packages/patches/python-sqlite-3.8.4-test-fix.patch,
  gnu/packages/patches/python2-sqlite-3.8.4-test-fix.patch: New patches.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/python.scm (python-2)[source]: Add patch.
  [inputs]: Add sqlite.
  (python)[source]: Add patch.
 2014-12-02 08:33:31 -06:00
Eric Bavier
7639105b12 gnu: subversion: Fix libtool wrapper execution in hooks. 
* gnu/packages/version-control.scm (subversion)[arguments]: New
  'patch-libtool-wrapper-ls phase.
 2014-12-02 08:33:30 -06:00
John Darrington
de878f1b29 gnu: Add xclip. 
* gnu/packages/xdisorg.scm (xclip): New variable.
 2014-12-02 15:13:10 +01:00
John Darrington
3c156c8a94 gnu: move xorg to xdisorg 
* gnu/packages/xorg.scm (xeyes, pixman, libdrm, libdrm-2.4.33, mtdev):
  Move to ...
* gnu/packages/xdisorg.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2014-12-02 15:13:10 +01:00
Federico Beffa
2ee8869a69 gnu: Add numpy. 
* gnu/packages/python.scm (python-numpy, python2-numpy): New variables.
 2014-12-02 11:12:44 +01:00
Ludovic Courtès
4cdec09a39 gnu: bittorrent: Build with 'glib-or-gtk-build-system'. 
Fixes <http://bugs.gnu.org/19128>.

* gnu/packages/bittorrent.scm (transmission)[build-system]: Change to
  GLIB-OR-GTK-BUILD-SYSTEM.
  [arguments]: Add #:glib-or-gtk-wrap-excluded-outputs argument.
 2014-12-01 22:41:04 +01:00
Andreas Enge
e823c14918 gnu: libgpg-error: Update to 1.17. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.17.
 2014-12-01 22:39:47 +01:00