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Author SHA1 Message Date
Leo Famulari
654f878f0b
gnu: Mutt: Update to 2.2.4. 
* gnu/packages/mail.scm (mutt): Update to 2.2.4.
 2022-05-02 19:31:42 -04:00
Leo Famulari
39bdf71db1
gnu: linux-libre 4.19: Update to 4.19.241. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.241.
(linux-libre-4.19-pristine-source): Update hash.
 2022-05-02 18:57:38 -04:00
Leo Famulari
ac2857e042
gnu: linux-libre 5.15: Update to 5.15.37. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.37.
(linux-libre-5.15-pristine-source): Update hash.
 2022-05-02 18:57:38 -04:00
Jan (janneke) Nieuwenhuizen
6b588da368
gnu: mes: Update to 0.24. 
* gnu/packages/mes.scm (mes-next)[source]: Update to 0.24.
[native-inputs]: Add m2-planet.
 2022-05-02 19:07:06 +02:00
Jan (janneke) Nieuwenhuizen
c14f1e3195
gnu: m2-planet: Update to 1.9.0. 
* gnu/packages/mes.scm (m2-planet): Update to 1.9.0.
 2022-05-02 19:07:04 +02:00
Jan (janneke) Nieuwenhuizen
954ff74bc8
gnu: mescc-tools: Update to 1.4.0. 
* gnu/packages/mes.scm (mescc-tools): Update to 1.4.0.
 2022-05-02 19:07:02 +02:00
Konstantinos Agiannis
f49b1a10f3
gnu: Add xschem. 
* gnu/packages/engineering.scm (xschem): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 18:03:06 +02:00
Ludovic Courtès
2a37f174be
services: Make sure Shepherd destructors match constructors. 
This is a followup to b06ecc5751,
211fe3f66e, and
fd57ce267c.

* gnu/services/base.scm (guix-publish-shepherd-service): Change 'stop'
method to use 'make-systemd-destructor' when 'make-systemd-constructor'
is used.
* gnu/services/dict.scm (dicod-shepherd-service): Change 'stop' method
to use 'make-inetd-destructor' when 'make-inetd-constructor' is used.
* gnu/services/messaging.scm (bitlbee-shepherd-service): Likewise.
 2022-05-02 17:57:30 +02:00
Ricardo Wurmus
39d6c13fda
gnu: python-hic2cool: Fix build. 
* gnu/packages/bioinformatics.scm (python-hic2cool)[arguments]: Fix
incompatibility with h5py 3; disable two tests.
 2022-05-02 17:33:31 +02:00
Mădălin Ionel Patrașcu
7494f4b4ab
gnu: Add r-agimicrorna. 
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:23:50 +02:00
Mădălin Ionel Patrașcu
9c19db8c1d
gnu: Add r-adductomicsr. 
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
495bc9f962
gnu: Add r-orgmassspecr. 
* gnu/packages/cran.scm (r-orgmassspecr): New variable.
 2022-05-02 15:17:28 +02:00
Mădălin Ionel Patrașcu
290934c8fc
gnu: Add r-adductdata. 
* gnu/packages/bioconductor.scm (r-adductdata): New variable.
 2022-05-02 15:17:28 +02:00
Felix Gruber
f455c1e313
gnu: Add python-scrapy. 
* gnu/packages/python-web.scm (python-scrapy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber
d9a7f652e2
gnu: Add python-itemloaders. 
* gnu/packages/python-xyz.scm (python-itemloaders): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber
76b6337650
gnu: Add python-parsel. 
* gnu/packages/python-web.scm (python-parsel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber
d219d48cce
gnu: Add python-protego. 
* gnu/packages/python-web.scm (python-protego): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:46 +02:00
Felix Gruber
c0c16d6b84
gnu: Add python-itemadapter. 
* gnu/packages/python-xyz.scm (python-itemadapter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber
fce913281f
gnu: Add python-queuelib. 
* gnu/packages/python-xyz.scm (python-queuelib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber
f728d1dcd2
gnu: Add python-pydispatcher. 
* gnu/packages/python-xyz.scm (python-pydispatcher): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Felix Gruber
919fdd6fcc
gnu: Add python-sybil. 
* gnu/packages/python-check.scm (python-sybil): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan
8ffd8fc64e
gnu: bear: Update to 3.0.19. 
* gnu/packages/build-tools.scm (bear): Update to 3.0.19.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan
9bf9da2571
gnu: spdlog: Update to 1.10.0. 
* gnu/packages/logging.scm (spdlog): Update to 1.10.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:45 +02:00
Greg Hogan
c152174ca2
gnu: fmt: Update to 8.1.1. 
* gnu/packages/pretty-print.scm (fmt): Update to 8.1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience
67b10f18c7
gnu: apl: Use G-expressions. 
* gnu/packages/apl.scm (apl)[arguments]: Use G-expressions.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience
fe6ba5e902
gnu: apl: Remove input labels. 
* gnu/packages/apl.scm (apl)[inputs]: Remove labels and sort.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Paul A. Patience
94b1905580
gnu: apl: Update to 1.8-r1550. 
This commit fixes a failing build caused by -Werror (the configure
script no longer sets the -Werror compilation flag).

* gnu/packages/apl.scm (apl): Update to 1.8-r1550.
[arguments]: Add 'fix-configure' phase.
[license]: Prefix with 'license:'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Niklas Eklund
35e5d2ce56
gnu: Add emacs-git-email. 
* gnu/packages/emacs-xyz.scm (emacs-git-email): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
kiasoc5
75b7f495d0
gnu: ugrep: Update to 3.7.9. 
* gnu/packages/search.scm (ugrep): Update to 3.7.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:44 +02:00
Greg Hogan
a8fde99e80
gnu: aws-sdk-cpp: Remove openssl input. 
* gnu/packages/cpp.scm (aws-sdk-cpp):
[inputs]: Remove openssl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
af856afb6c
gnu: s2n: Link to aws-lc as libcrypto dependency. 
* gnu/packages/tls.scm (s2n):
[arguments]: Fix for openssl as replacement input for aws-lc.
[propagated-inputs]: Add aws-lc and remove openssl.
[supported-systems]: Only support x86_64-linux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
a5a408c3a7
gnu: aws-lc: Fix checksum and enable tests. 
* gnu/packages/tls.scm (aws-lc):
[source]: Fix checksum.
[arguments]: Enable tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
fec71efeae
gnu: aws-crt-cpp: Fix comment formatting. 
* gnu/packages/cpp.scm (aws-crt-cpp): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
a822f3e2d0
gnu: aws-c-mqtt: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-mqtt): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
b62d4872ba
gnu: aws-c-s3: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-s3): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
d62c101991
gnu: aws-c-auth: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-auth): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:43 +02:00
Greg Hogan
b8c4bb3e0d
gnu: aws-c-compression: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-compression): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
d7c8a83549
gnu: aws-c-http: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-http): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
e8f2855d73
gnu: aws-c-sdkutils: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-sdkutils): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
c7805de435
gnu: aws-c-cal: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-cal): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
d230c67068
gnu: aws-c-io: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-io): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
4dbb1520e2
gnu: aws-c-event-stream: Fix comment formatting. 
* gnu/packages/c.scm (aws-c-event-stream): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
a9b4d69c9c
gnu: aws-checksums: Fix comment formatting. 
* gnu/packages/c.scm (aws-checksums): Fix comment formatting.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:42 +02:00
Greg Hogan
acbf5b1022
gnu: aws-c-common: Only support i686 and x86_64. 
* gnu/packages/c.scm (aws-c-common):
[supported-systems]: Only support i686-linux and x86_64-linux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-02 15:14:41 +02:00
Ludovic Courtès
6075d25143
services: bitlbee: Preserve 'PURPLE_PLUGIN_PATH'. 
Fixes a regression introduced in
211fe3f66e whereby, in inetd mode, and
when using 'bitlbee-purple', libpurple plugins would not be found.

* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass
 #:preserved-environment-variables to 'least-authority-wrapper'.
 2022-05-02 15:14:41 +02:00
Ricardo Wurmus
b1dd32d8e3
gnu: htslib-for-stringtie: Inherit from htslib-1.12. 
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): Inherit from
htslib-1.12.
 2022-05-02 14:35:26 +02:00
Ricardo Wurmus
4571b218b5
gnu: Remove python-xlrd-1. 
* gnu/packages/python-xyz.scm (python-xlrd-1): Remove variable.
 2022-05-02 13:49:57 +02:00
Ricardo Wurmus
4642a50d52
gnu: Remove python-cytoolz-for-cooler. 
* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): Remove variable.
 2022-05-02 13:35:03 +02:00
Ricardo Wurmus
5caad9f252
gnu: python-cooler: Use more recent cytoolz. 
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
 2022-05-02 13:33:16 +02:00
Ricardo Wurmus
9dafaf1635
gnu: python-anndata: Remove python-xlrd-1. 
* gnu/packages/python-xyz.scm (python-anndata)[propagated-inputs]: Remove
python-xlrd-1.
 2022-05-02 12:39:02 +02:00