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Author SHA1 Message Date
Ricardo Wurmus
b12c6a664d
gnu: r-ape: Update to 5.0. 
* gnu/packages/bioinformatics.scm (r-ape): Update to 5.0.
[propagated-inputs]: Add r-rcpp.
 2017-11-03 14:14:38 +01:00
Ricardo Wurmus
840782204f
gnu: r-bbmle: Update to 1.0.20. 
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.20.
 2017-11-03 14:14:38 +01:00
Ricardo Wurmus
1a1b4f0571
gnu: r-proxy: Update to 0.4-19. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-19.
 2017-11-03 14:14:38 +01:00
Ricardo Wurmus
a8a2871f71
gnu: r-glue: Update to 1.2.0. 
* gnu/packages/cran.scm (r-glue): Update to 1.2.0.
 2017-11-03 14:14:38 +01:00
Ricardo Wurmus
a6ec5b7043
gnu: r-withr: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
fd9afcf4ea
gnu: r-quantreg: Update to 5.34. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
1fe75660c0
gnu: r-robustbase: Update to 0.92-8. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
1fb415cb50
gnu: r-purrr: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
c8818f5577
gnu: r-irlba: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus
116e9837b5
gnu: r-checkmate: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
fde66e3018
gnu: r-multitaper: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
0a123e0609
gnu: r-data-table: Update to 1.10.4-3. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
b5a2f37157
gnu: r-pryr: Update to 0.1.3 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus
6b968c4cd3
gnu: Add r-corrplot. 
* gnu/packages/cran.scm (r-corrplot): New variable.
 2017-11-03 10:34:24 +01:00
Ricardo Wurmus
81e0b62502
gnu: Add r-ggrepel. 
* gnu/packages/cran.scm (r-ggrepel): New variable.
 2017-11-03 10:34:23 +01:00
Mark H Weaver
0f3142e7c3
gnu: linux-libre: Update to 4.13.11. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.11.
(%linux-libre-hash): Update hash.
 2017-11-03 01:31:06 -04:00
Mark H Weaver
336b8d422d
gnu: linux-libre@4.9: Update to 4.9.60. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.60.
 2017-11-03 01:30:25 -04:00
Mark H Weaver
15d44dfe22
gnu: linux-libre@4.4: Update to 4.4.96. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.96.
 2017-11-03 01:29:33 -04:00
Oleg Pykhalov
72df48dbad
gnu: Add kodi-cli. 
* gnu/packages/kodi.scm (kodi-cli): New variable.
 2017-11-03 06:46:03 +03:00
Ricardo Wurmus
1d84500a72
gnu: conda: Fix environment scripts. 
* gnu/packages/package-management.scm (conda)[arguments]: Add phase
"undo-wrap".
 2017-11-03 00:12:46 +01:00
Marius Bakke
ada53b1d50
Revert "gnu: itstool: Update to 2.0.4." 
This reverts commit 13fbd174b5.
 2017-11-02 23:00:23 +01:00
Marius Bakke
77576be41f
gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0g.
[source]: Add HTTPS mirror.
 2017-11-02 22:21:59 +01:00
Marius Bakke
1df4f5c919
gnu: openssl@1.0: Replace with 1.0.2m [fixes CVE-2017-3735, CVE-2017-2736]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2m): New public variable.
 2017-11-02 22:21:59 +01:00
Efraim Flashner
22bf67d1f4
gnu: enlightenment: Update to 0.22.0. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.0.
 2017-11-02 23:05:11 +02:00
Efraim Flashner
41b5408235
gnu: efl: Update to 1.20.5. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.5.
 2017-11-02 23:05:09 +02:00
Marius Bakke
bc183968f5
gnu: vte-ng: Update to 0.50.2.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.2.a.
 2017-11-02 21:17:41 +01:00
Tobias Geerinckx-Rice
52995941bc
gnu: gnome-todo: Update to 3.26.2. 
* gnu/packages/gnome.scm (gnome-todo): Update to 3.26.2.
 2017-11-02 21:10:21 +01:00
Tobias Geerinckx-Rice
92c9392767
gnu: dconf-editor: Update to 3.26.2. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.26.2.
 2017-11-02 21:10:21 +01:00
Tobias Geerinckx-Rice
b39e612115
gnu: gnome-clocks: Update to 3.26.1. 
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.26.1.
 2017-11-02 21:10:20 +01:00
Tobias Geerinckx-Rice
1b59d45ee4
gnu: file-roller: Update to 3.26.2. 
gnu/packages/gnome.scm (file-roller): Update to 3.26.2.
 2017-11-02 21:10:20 +01:00
Tobias Geerinckx-Rice
46994d0d4c
gnu: aisleriot: Update to 3.22.4. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.4.
 2017-11-02 21:10:19 +01:00
Tobias Geerinckx-Rice
03e775d4e8
gnu: knot: Update to 2.6.1. 
* gnu/packages/dns.scm (knot): Update to 2.6.1.
 2017-11-02 21:10:18 +01:00
Tobias Geerinckx-Rice
73b80ff924
gnu: miniupnpc: Update to 2.0.20171102. 
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171102.
 2017-11-02 21:10:18 +01:00
Rutger Helling
3440f12a7e
gnu: mpv: enable Wayland support. 
* gnu/packages/video.scm (mpv)[inputs]: Add wayland and libxkbcommon.
 2017-11-02 16:03:25 -04:00
Kei Kebreau
13fbd174b5
gnu: itstool: Update to 2.0.4. 
* gnu/packages/glib.scm (itstool): Update to 2.0.4.
[inputs]: Replace python and python-libxml2 with python-2 and python2-libxml2.
 2017-11-02 15:37:22 -04:00
Kei Kebreau
67bd376b1a
gnu: gnome-maps: Update to 3.26.2. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.26.2.
[arguments]: In 'install' phase, add webkitgtk to LD_LIBRARY_PATH.
 2017-11-02 14:42:58 -04:00
Kei Kebreau
4dd137d508
gnu: libgweather: Update to 3.26.0. 
* gnu/packages/gnome.scm (libgweather): Update to 3.26.0.
 2017-11-02 12:05:03 -04:00
Julien Lepiller
bb27eb0dbf
gnu: Add java-plexus-classworlds. 
* gnu/packages/java.scm (java-plexus-classworlds): New variable.
 2017-11-02 13:07:38 +01:00
Julien Lepiller
4d50897515
gnu: Add java-powermock-api-easymock. 
* gnu/packages/java.scm (java-powermock-api-easymock): New variable.
 2017-11-02 13:07:30 +01:00
Julien Lepiller
33db168181
gnu: Add java-powermock-modules-junit4. 
* gnu/packages/java.scm (java-powermock-modules-junit4): New variable.
 2017-11-02 13:07:27 +01:00
Julien Lepiller
6c21d46c70
gnu: Add java-powermock-modules-junit4-common. 
* gnu/packages/java.scm (java-powermock-modules-junit4-common): New
variable.
 2017-11-02 13:07:24 +01:00
Julien Lepiller
2d5d65d7dd
gnu: Add java-powermock-api-support. 
* gnu/packages/java.scm (java-powermock-api-support): New variable.
 2017-11-02 13:07:22 +01:00
Julien Lepiller
d4a4d5da60
gnu: Add java-powermock-core. 
* gnu/packages/java.scm (java-powermock-core): New variable.
 2017-11-02 13:07:19 +01:00
Julien Lepiller
8d6a48150a
gnu: Add java-powermock-reflect. 
* gnu/packages/java.scm (java-powermock-reflect): New variable.
* gnu/packages/patches/java-powermock-fix-java-files.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-11-02 13:07:17 +01:00
Julien Lepiller
5619556b24
gnu: Add java-xerial-core. 
* gnu/packages/java.scm (java-xerial-core): New variable.
 2017-11-02 13:07:15 +01:00
Julien Lepiller
a53d9ac0f2
gnu: Add java-lmax-disruptor. 
* gnu/packages/java.scm (java-lmax-disruptor): New variable.
 2017-11-02 13:07:12 +01:00
Julien Lepiller
3120836732
gnu: Add java-bouncycastle-bcpkix. 
* gnu/packages/java.scm (java-bouncycastle-bcpkix): New variable.
 2017-11-02 13:07:09 +01:00
Julien Lepiller
62315865df
gnu: Add java-bouncycastle-bcprov. 
* gnu/packages/java.scm (java-bouncycastle-bcprov): New variable.
 2017-11-02 13:07:07 +01:00
Julien Lepiller
d54d7d31ac
gnu: Add java-lz4. 
* gnu/packages/java.scm (java-lz4): New variable.
 2017-11-02 13:07:04 +01:00
Julien Lepiller
eaf3cb7a41
gnu: Add java-mvel2. 
* gnu/packages/java.scm (java-mvel2): New variable.
 2017-11-02 13:07:01 +01:00
Julien Lepiller
1717a7de7b
gnu: Add java-jnacl. 
* gnu/packages/java.scm (java-jnacl): New variable.
 2017-11-02 13:06:59 +01:00
Julien Lepiller
0442d897e9
gnu: Add java-testng. 
* gnu/packages/java.scm (java-testng): New variable.
 2017-11-02 13:06:56 +01:00
Julien Lepiller
ca98e4481f
gnu: Add java-fest-assert. 
* gnu/packages/java.scm (java-fest-assert): New variable.
 2017-11-02 13:06:54 +01:00
Julien Lepiller
3c6c835806
gnu: Add java-fest-test. 
* gnu/packages/java.scm (java-fest-test): New variable.
 2017-11-02 13:06:51 +01:00
Julien Lepiller
7a343e971a
gnu: Add java-fest-util. 
* gnu/packages/java.scm (java-fest-util): New variable.
 2017-11-02 13:06:48 +01:00
Julien Lepiller
e84b899d50
gnu: Add java-jmock-legacy. 
* gnu/packages/java.scm (java-jmock-legacy): New variable.
 2017-11-02 13:06:46 +01:00
Julien Lepiller
25436c6d03
gnu: Add java-jmock-junit4. 
* gnu/packages/java.scm (java-jmock-junit4): New variable.
 2017-11-02 13:06:43 +01:00
Julien Lepiller
045124ae2f
gnu: Add java-jmock. 
* gnu/packages/java.scm (java-jmock): New variable.
 2017-11-02 13:06:41 +01:00
Julien Lepiller
11bc385b7b
gnu: Add java-bsh. 
* gnu/packages/java.scm (java-bsh): New variable.
 2017-11-02 13:06:38 +01:00
Julien Lepiller
a6dd06d0e2
gnu: Add java-jcommander. 
* gnu/packages/java.scm (java-jcommander): New variable.
 2017-11-02 13:06:19 +01:00
Kei Kebreau
2524a2a17a
gnu: five-or-more: Update to 3.26.0. 
* gnu/packages/gnome.scm (five-or-more): Update to 3.26.0.
 2017-11-02 07:36:58 -04:00
Efraim Flashner
30ee6bf5d2
gnu: dejagnu: Update to 1.6.1. 
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.6.1.
 2017-11-02 13:12:15 +02:00
Oleg Pykhalov
50e3f2a5a4
gnu: emacs-helm-make: Update to 0.1.0-1.21c1bfa. 
* gnu/packages/emacs.scm (emacs-helm-make): Update to 0.1.0-1.21c1bfa.
 2017-11-02 11:05:46 +03:00
Eric Bavier
a254971350
gnu: units: Add readline input. 
* gnu/packages/maths.scm (units)[inputs]: Add readline.
 2017-11-01 17:17:01 -05:00
Eric Bavier
0498d24866
gnu: units: Add python input. 
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field.  Add 'wrap-units_cur phase.
 2017-11-01 17:15:10 -05:00
Eric Bavier
f11d2849a1
gnu: units: Update to 2.16. 
* gnu/packages/maths.scm (units): Update to 2.16.
 2017-11-01 17:11:15 -05:00
Kei Kebreau
55ed15baba
gnu: gnome-mines: Update to 3.26.0. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.26.0.
 2017-11-01 19:49:46 -04:00
Marius Bakke
88b35013b7
gnu: git: Update to 2.15.0. 
* gnu/packages/version-control.scm (git): Update to 2.15.0.
 2017-11-01 21:26:58 +01:00
Marius Bakke
61e1d6a791
gnu: imagemagick: Update to 6.9.9-21. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-21.
[home-page]: Use HTTPS.
 2017-11-01 21:26:50 +01:00
Marius Bakke
449ad88bb5
gnu: libass: Update to 0.14.0. 
* gnu/packages/video.scm (libass): Update to 0.14.0.
[native-inputs]: Change from YASM to NASM.
 2017-11-01 20:29:32 +01:00
Marius Bakke
5d7141cd28
tests: ssh: Make sure we can run executables from PATH. 
* gnu/tests/ssh.scm (run-ssh-test): Add tests for running commands in system
and user profile.
 2017-11-01 20:29:32 +01:00
Marius Bakke
2c16be569c
system: Return early in skeleton '.bashrc' when the shell is non-interactive. 
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Add return statement.
 2017-11-01 20:29:32 +01:00
Marius Bakke
0ab59dd8b8
system: Test for interactive shell instead of cat in skeleton '.bashrc'. 
* gnu/system/shadow.scm (default-skeletons)[bashrc]: Wrap $SSH_CLIENT test in
a conditional testing for interactive shell.
 2017-11-01 20:29:32 +01:00
Marius Bakke
83a7a88f93
gnu: feh: Enable tests. 
* gnu/packages/image-viewers.scm (feh)[arguments]: Remove #:tests?.  Add
 #:test-target.
[native-inputs]: Add PERL and PERL-TEST-COMMAND.  New field.
 2017-11-01 20:29:32 +01:00
Marius Bakke
6b520156c2
gnu: Add perl-test-command. 
* gnu/packages/perl.scm (perl-test-command): New public variable.
 2017-11-01 20:29:32 +01:00
Efraim Flashner
5010d0e364
gnu: wine64: Add aarch64-linux to supported-systems. 
* gnu/packages/wine.scm (wine64)[supported-systems]: Add aarch64-linux.
 2017-11-01 10:17:18 +02:00
Ben Woodcroft
03d6e9dd08
gnu: vsearch: Update to 2.5.2. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.2.
 2017-11-01 10:57:05 +10:00
Ben Woodcroft
e126b79736
gnu: diamond: Update to 0.9.11. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.11.
 2017-11-01 10:57:03 +10:00
Tobias Geerinckx-Rice
e6ee13599d
gnu: libfilezilla: Update to 0.11.1. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.11.1.
 2017-11-01 01:02:04 +01:00
Tobias Geerinckx-Rice
9b5db24e7a
gnu: gnome-mpv: Update to 0.13. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.13.
 2017-11-01 01:02:04 +01:00
Tobias Geerinckx-Rice
78ab71ce1d
gnu: you-get: Update to 0.4.939. 
* gnu/packages/video.scm (you-get): Update to 0.4.939.
 2017-11-01 01:02:03 +01:00
Leo Famulari
bc8bd40e6a
gnu: ncmpcpp: Update to 0.8.1. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.8.1.
 2017-10-31 18:13:53 -04:00
Oleg Pykhalov
cd5c3979d1
gnu: Add emacs-ggtags. 
* gnu/packages/emacs.scm (emacs-ggtags): New variable.
 2017-10-31 20:08:00 +03:00
Kei Kebreau
90bf26088e
gnu: Add sakura. 
* gnu/packages/terminals.scm (sakura): New variable.
 2017-10-31 09:41:52 -04:00
Oleg Pykhalov
016590a951
gnu: Add emacs-company-quickhelp. 
* gnu/packages/emacs.scm (emacs-company-quickhelp): New variable.
 2017-10-31 14:55:18 +03:00
宋文武
56295c5160
gnu: lxc: Update to 2.1.1. 
* gnu/packages/virtualization.scm (lxc): Update to 2.1.1.
 2017-10-31 19:28:09 +08:00
Oleg Pykhalov
2e4bb8c817
gnu: Add emacs-helm-make. 
* gnu/packages/emacs.scm (emacs-helm-make): New variable.
 2017-10-31 14:10:37 +03:00
Ricardo Wurmus
7bf59f7021
gnu: Remove cufflinks. 
Cufflinks includes essential non-free code.
Fixes <https://bugs.gnu.org/28946>.

* gnu/packages/bioinformatics.scm (cufflinks): Remove variable.
 2017-10-31 08:17:06 +01:00
Leo Famulari
b275cd22d4
gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618]. 
* gnu/packages/apr.scm (apr): Update to 1.6.1.
 2017-10-30 21:46:18 -04:00
Leo Famulari
b614c48017
gnu: apr: Update to 1.6.3 [fixes CVE-2017-12613]. 
* gnu/packages/apr.scm (apr): Update to 1.6.3.
 2017-10-30 21:46:18 -04:00
Leo Famulari
3022680aba
gnu: mpd: Update to 0.20.11. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.11.
 2017-10-30 21:46:14 -04:00
Leo Famulari
44b8823fc7
gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227]. 
* gnu/packages/networking.scm (quagga): Update to 1.2.2.
 2017-10-30 20:42:13 -04:00
Mark H Weaver
8b17ee4846
gnu: webkitgtk: Update to 2.18.2. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.2.
 2017-10-30 20:07:00 -04:00
Ludovic Courtès
c2eb8cd98c
gnu: xorg-server: Build reproducibly. 
Fixes <https://bugs.gnu.org/24112>.

* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass "--with-os-name"
and "--with-os-vendor" as #:configure-flags.
Augment 'pre-configure' phase to set 'BUILD_DATE' and 'BUILD_TIME' in
'configure'.
 2017-10-31 00:51:37 +01:00
Efraim Flashner
8ff5b8aaa3
gnu: perl-http-cookies: Fix source uri. 
This is a follow-up to d284f01826.

* gnu/packages/web.scm (perl-http-cookies)[source]: Update to new source uri.
 2017-10-30 19:49:37 +02:00
Tobias Geerinckx-Rice
484a1c05d0
gnu: ola: Update to 0.10.5. 
* gnu/packages/lighting.scm (ola): Update to 0.10.5.
 2017-10-30 17:20:43 +01:00
Tobias Geerinckx-Rice
59261ebeea
gnu: ethtool: Update to 4.13. 
* gnu/packages/networking.scm (ethtool): Update to 4.13.
 2017-10-30 17:20:42 +01:00
Tobias Geerinckx-Rice
2fb83ca6c5
gnu: perl-class-tiny: Update to 1.006. 
* gnu/packages/perl.scm (perl-class-tiny): Update to 1.006.
 2017-10-30 17:20:42 +01:00
Tobias Geerinckx-Rice
7e5132a297
gnu: perl-extutils-pkgconfig: Update to 1.16. 
* gnu/packages/perl.scm (perl-extutils-pkgconfig): Update to 1.16.
 2017-10-30 17:20:41 +01:00