Commit graph

6469 commits

Author SHA1 Message Date
Ben Woodcroft
78bb471f37 gnu: Add ruby-lemon.
* gnu/packages/ruby.scm (ruby-lemon): New variable.
2016-01-26 16:15:24 +10:00
Ben Woodcroft
9273ee8f44 gnu: Add ruby-ae.
* gnu/packages/ruby.scm (ruby-ae): New variable.
2016-01-26 16:11:49 +10:00
Ben Woodcroft
120fc74b21 gnu: Add ruby-qed.
* gnu/packages/ruby.scm (ruby-qed): New variable.
2016-01-26 16:06:10 +10:00
Ben Woodcroft
90fcedf220 gnu: Add ruby-brass.
* gnu/packages/ruby.scm (ruby-brass): New variable.
2016-01-26 16:02:15 +10:00
Ben Woodcroft
7c8131c76b gnu: Add ruby-rubytest.
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
2016-01-26 15:59:39 +10:00
Ben Woodcroft
a78d62f432 gnu: sra-tools: Update to 2.5.7.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
Ben Woodcroft
fe91666b79 gnu: ncbi-vdb: Update to 2.5.7.
gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
2016-01-26 10:59:13 +10:00
Ben Woodcroft
d3b39bc231 gnu: ngs-sdk: Update to 1.2.3.
gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
2016-01-26 10:59:13 +10:00
Alex Kost
0833d0c025 gnu: aspell-dict-en: Update to 2016.01.19-0.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
2016-01-25 22:11:47 +03:00
Efraim Flashner
8581f4c195 gnu: Add python-efl.
* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
2016-01-25 11:41:23 +02:00
Efraim Flashner
2259442b15 gnu: cmocka: New variable.
* gnu/packages/check.scm (cmocka): New variable.
2016-01-25 11:39:42 +02:00
Ben Woodcroft
23f3cbb8de gnu: Add pixz.
* gnu/packages/compression.scm (pixz): New variable.
2016-01-25 18:45:33 +10:00
Ludovic Courtès
f6afc48008 gnu: grue-hunter: Use 'https' URL.
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
2016-01-25 00:11:22 +01:00
Ben Woodcroft
bcadaf0050 gnu: Add sortmerna.
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
2016-01-25 08:35:11 +10:00
Andreas Enge
447f3ae7c1 gnu: calibre: Update to 2.49.0.
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
2016-01-24 20:12:05 +01:00
Ricardo Wurmus
541ed7b030 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
2016-01-24 14:25:20 +01:00
Ricardo Wurmus
a763ce7da9 gnu: Add Qtractor.
* gnu/packages/music.scm (qtractor): New variable.
2016-01-24 14:20:52 +01:00
Ricardo Wurmus
8ddc5d5723 gnu: yoshimi: Update to 1.3.8.2.
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
2016-01-24 14:19:29 +01:00
Efraim Flashner
6b6a62dd05 gnu: privoxy: Update to 3.0.24.
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
2016-01-24 09:20:55 +02:00
Efraim Flashner
be866fb13e gnu: tor: Update to 0.2.7.6.
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
2016-01-24 07:21:33 +02:00
Efraim Flashner
17206f72ed gnu: myrepos: Update to 1.20160123.
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
2016-01-24 07:04:05 +02:00
Efraim Flashner
4c73302739 gnu: nano: Update to 2.5.1.
* gnu/packages/nano.scm (nano): Update to 2.5.1.
2016-01-24 06:46:01 +02:00
Leo Famulari
fe17fb4a2c gnu: letsencrypt and acme: Update to 0.2.0.
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
2016-01-23 17:39:08 -05:00
Efraim Flashner
21565719e5 gnu: claws-mail: Update to 3.13.2.
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
2016-01-23 20:13:31 +02:00
Ricardo Wurmus
3a40a92c73 gnu: Add cufflinks.
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
2016-01-23 09:15:11 +01:00
Ricardo Wurmus
94ce537eac gnu: Add TopHat.
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-23 08:53:10 +01:00
Ricardo Wurmus
3062d750b4 gnu: star: Update to 2.5.1b.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
2016-01-23 08:40:14 +01:00
Ricardo Wurmus
c0266e8d03 gnu: star: Use "modify-phases" syntax.
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
  syntax.
2016-01-23 08:40:14 +01:00
Efraim Flashner
ebf89f134c gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233].
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
2016-01-22 09:00:34 +02:00
Eric Bavier
b6d937d99e gnu: american-fuzzy-lop: Update to 1.96b.
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
  [arguments]: Create symbolic link to custom qemu, rather than copying.
2016-01-21 23:54:48 -06:00
Eric Bavier
2d8211ab30 gnu: american-fuzzy-lop: Fix qemu configure flags.
Fixes regression introduced in 06da1a6.

* gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited
  #:configure-flags.
2016-01-21 23:54:48 -06:00
Leo Famulari
765973cd65 gnu: Add iftop.
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 20:21:19 -05:00
Leo Famulari
c2af02602a Revert "gnu: Add iftop."
This reverts commit 45da8c6dd1.
2016-01-21 20:11:21 -05:00
Leo Famulari
45da8c6dd1 gnu: Add iftop.
* gnu/packages/admin.scm (iftop): New variable.
2016-01-21 18:11:12 -05:00
Mark H Weaver
3738d8700f gnu: ffmpeg: Update to 2.8.5.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-21 10:30:21 -05:00
Mark H Weaver
0c0207a93b gnu: gajim: Update to 0.16.5 [fixes CVE-2015-8688].
* gnu/packages/messaging.scm (gajim): Update to 0.16.5.
  [arguments]: Disable tests.
2016-01-21 10:24:44 -05:00
Ricardo Wurmus
6c92d8dd35 gnu: bind-utils: Build and install "nsupdate".
* gnu/packages/dns.scm (bind-utils)[arguments]: Build and install
  "nsupdate" executable.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus
bd0eb6672b gnu: bind-utils: Generalize "build" and "install" phases.
* gnu/packages/dns.scm (bind-utils)[arguments]: Generalize "build" and
  "install" phases.
2016-01-21 15:53:35 +01:00
Ricardo Wurmus
b2844d8f14 gnu: bind-utils: Use "modify-phases" syntax.
* gnu/packages/dns.scm (bind-utils): Use "modify-phases" syntax.
2016-01-21 15:53:35 +01:00
Pjotr Prins
897092875e gnu: r-qtl: Update to 1.38-4.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.38-4.
2016-01-21 11:16:12 +01:00
Mark H Weaver
1207a0c33e gnu: libxmp: Update to 4.3.10.
* gnu/packages/audio.scm (libxmp): Update to 4.3.10.
2016-01-21 00:44:46 -05:00
Eric Bavier
7ed0145712 gnu: Add NQC.
* gnu/packages/lego.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-20 22:06:27 -06:00
Leo Famulari
feb767b23c gnu: Add transmission-remote-cli.
* gnu/packages/bittorrent.scm (transmission-remote-cli): New variable.
2016-01-20 20:19:46 -05:00
Mark H Weaver
80b64ee2d8 gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704].
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
2016-01-20 14:58:40 -05:00
Mark H Weaver
d912db5bc0 gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704].
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
2016-01-20 14:57:06 -05:00
Mark H Weaver
beed3af565 gnu: linux-libre: Add fix for CVE-2016-0728.
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20 13:23:42 -05:00
David Thompson
d4df203292 gnu: obs: Add support for webcams.
* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
2016-01-20 11:46:45 -05:00
David Thompson
945d985aab gnu: Add v4l-utils.
* gnu/packages/video.scm (v4l-utils): New variable.
2016-01-20 11:46:45 -05:00
Andreas Enge
f32ee38fcd gnu: arb: Correct patch.
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.

This is a follow-up to commit ffc8f34511.
2016-01-20 16:57:17 +01:00
Andreas Enge
ffc8f34511 gnu: arb: Update to 2.8.1.
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20 16:33:34 +01:00