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Author SHA1 Message Date
Tobias Geerinckx-Rice
006a245087
gnu: libvirt: Update to 3.10.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 3.10.0.
[source]: Remove patches.
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-12-05 16:39:38 +01:00
Tobias Geerinckx-Rice
26c6de8b71
gnu: di: Streamline description. 
* gnu/packages/admin.scm (di)[description]: Avoid incongruent prepositions
and sentence fragments.
 2017-12-05 16:39:37 +01:00
Tobias Geerinckx-Rice
bdd4aa1643
gnu: ghc-comonad: Run tests. 
* gnu/packages/haskell.scm (ghc-comonad)[arguments]: Delete to enable tests.
[native-inputs]: Add ghc-doctest.
 2017-12-05 16:39:37 +01:00
Tobias Geerinckx-Rice
f1c2aed7df
gnu: ghc-half: Update to 0.2.2.3. 
* gnu/packages/haskell.scm (ghc-half): Update to 0.2.2.3.
 2017-12-05 16:39:37 +01:00
Tobias Geerinckx-Rice
a5f89a6333
gnu: ghc-psqueues: Tweak description. 
Fix Emacs' syntax highlighting, which got confused by the leading ‘(’.

* gnu/packages/haskell.scm (ghc-psqueues)[description]: Slightly adjust.
 2017-12-05 16:39:36 +01:00
Tobias Geerinckx-Rice
45a608ddc7
gnu: ghc-glob: Mark up description. 
* gnu/packages/haskell.scm (ghc-glob)[description]: This is the ideal spot
for a @dfn.  Use it.
 2017-12-05 16:37:52 +01:00
Tobias Geerinckx-Rice
c0fc5003f3
gnu: ghc-glob: Update to 0.9.1. 
* gnu/packages/haskell.scm (ghc-glob): Update to 0.9.1.
 2017-12-05 16:37:52 +01:00
Tobias Geerinckx-Rice
c18f82dbfb
gnu: ghc-free: Update to 4.12.4. 
* gnu/packages/haskell.scm (ghc-free): Update to 4.12.4.
 2017-12-05 16:37:52 +01:00
Tobias Geerinckx-Rice
93e8c799fa
gnu: ghc-foldl: Update to 1.3.5. 
* gnu/packages/haskell.scm (ghc-foldl): Update to 1.3.5.
 2017-12-05 16:37:51 +01:00
Tobias Geerinckx-Rice
ffe8c06e89
gnu: ghc-fingertree: Run tests. 
* gnu/packages/haskell.scm (ghc-fingertree)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-hunit, ghc-quickcheck, ghc-test-framework,
ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
 2017-12-05 16:37:51 +01:00
Tobias Geerinckx-Rice
35deff7286
gnu: ghc-fingertree: Update to 0.1.3.0. 
* gnu/packages/haskell.scm (ghc-fingertree): Update to 0.1.3.0.
 2017-12-05 16:37:51 +01:00
Tobias Geerinckx-Rice
d4fd8ee4aa
gnu: ghc-fgl-arbitrary: Update to 0.2.0.3. 
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): Update to 0.2.0.3.
 2017-12-05 16:37:50 +01:00
Tobias Geerinckx-Rice
1c42bd1387
gnu: ghc-executable-path: Update to 0.0.3.1. 
* gnu/packages/haskell.scm (ghc-executable-path): Update to 0.0.3.1.
 2017-12-05 16:37:50 +01:00
Tobias Geerinckx-Rice
e1e803881c
gnu: ghc-exceptions: Run tests. 
* gnu/packages/haskell.scm (ghc-exceptions)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-test-framework and ghc-test-framework-quickcheck2.
 2017-12-05 16:37:50 +01:00
Tobias Geerinckx-Rice
092ab12fc3
gnu: ghc-exceptions: Update to 0.8.3. 
* gnu/packages/haskell.scm (ghc-exceptions): Update to 0.8.3.
 2017-12-05 16:37:49 +01:00
Tobias Geerinckx-Rice
56aa945e1b
gnu: ghc-enclosed-exceptions: Update to 2.0.1. 
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): Update to 2.0.1.
 2017-12-05 16:37:49 +01:00
Tobias Geerinckx-Rice
7c0e595493
gnu: ghc-dlist: Update to 0.8.0.3. 
* gnu/packages/haskell.scm (ghc-dlist): Update to 0.8.0.3.
 2017-12-05 16:37:49 +01:00
Tobias Geerinckx-Rice
b46ebdd867
gnu: ghc-directory: Update to 1.3.1.5. 
* gnu/packages/haskell.scm (ghc-directory): Update to 1.3.1.5.
 2017-12-05 16:37:48 +01:00
Tobias Geerinckx-Rice
59e0812966
gnu: ghc-deepseq-generics: Update to 0.2.0.0. 
* gnu/packages/haskell.scm (ghc-deepseq-generics): Update to 0.2.0.0.
[arguments]: Delete ‘relax-ghc-prim-dependency’ phase.
 2017-12-05 16:37:48 +01:00
Tobias Geerinckx-Rice
6d39aee521
gnu: ghc-cookie: Update to 0.4.3. 
* gnu/packages/haskell-web.scm (ghc-cookie): Update to 0.4.3.
 2017-12-05 16:37:48 +01:00
Tobias Geerinckx-Rice
ab880e6e6c
gnu: ghc-contravariant: Update to 1.4. 
* gnu/packages/haskell.scm (ghc-contravariant): Update to 1.4.
 2017-12-05 16:37:47 +01:00
Tobias Geerinckx-Rice
bfd2ebda71
gnu: ghc-cmdargs: Update to 0.10.18. 
* gnu/packages/haskell.scm (ghc-cmdargs): Update to 0.10.18.
 2017-12-05 16:37:47 +01:00
Tobias Geerinckx-Rice
b84908566d
gnu: ghc-cmark: Update to 0.5.6. 
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.6.
[description]: Update version information about bundled libcmark, and move
it to a source comment.
 2017-12-05 16:37:47 +01:00
Tobias Geerinckx-Rice
615abb9550
gnu: ghc-clock: Update to 0.7.2. 
* gnu/packages/haskell.scm (ghc-clock): Update to 0.7.2.
 2017-12-05 16:37:46 +01:00
Tobias Geerinckx-Rice
4d9cdf3c4e
gnu: ghc-cheapskate: Expand description. 
* gnu/packages/haskell.scm (ghc-cheapskate)[description]: Define ‘XSS’.
 2017-12-05 16:37:46 +01:00
Tobias Geerinckx-Rice
751de3d65c
gnu: ghc-cheapskate: Alphabetise inputs. 
* gnu/packages/haskell.scm (ghc-cheapskate)[inputs]: Order alphabetically.
 2017-12-05 16:37:46 +01:00
Tobias Geerinckx-Rice
2c72272a50
gnu: ghc-chasingbottoms: Update to 1.3.1.3. 
* gnu/packages/haskell.scm (ghc-chasingbottoms): Update to 1.3.1.3.
[source]: Remove snippet and its modules.
 2017-12-05 16:37:45 +01:00
Tobias Geerinckx-Rice
6bfcb59d02
gnu: ghc-bytestring-handle: Alphabetise inputs. 
* gnu/packages/haskell.scm (ghc-bytestring-handle)[inputs]: Order alphabetically.
 2017-12-05 16:37:45 +01:00
Tobias Geerinckx-Rice
39bcc93283
gnu: ghc-bytestring-handle: Update to 0.1.0.6. 
* gnu/packages/haskell.scm (ghc-bytestring-handle): Update to 0.1.0.6.
 2017-12-05 16:37:45 +01:00
Tobias Geerinckx-Rice
934dc8d2e4
gnu: ghc-bytestring-builder: Update to 0.10.8.1.0. 
* gnu/packages/haskell.scm (ghc-bytestring-builder): Update to 0.10.8.1.0.
 2017-12-05 16:37:44 +01:00
Tobias Geerinckx-Rice
df906169d6
gnu: ghc-bytestring: Alphabetise inputs. 
* gnu/packages/haskell.scm (ghc-bytestring)[inputs]: Order alphabetically.
 2017-12-05 16:37:44 +01:00
Tobias Geerinckx-Rice
2545c92ae5
gnu: ghc-bytestring: Update to 0.10.8.2 
* gnu/packages/haskell.scm (ghc-bytestring): Update to 0.10.8.2
 2017-12-05 16:37:44 +01:00
Tobias Geerinckx-Rice
3433e359e4
gnu: ghc-base-compat: Update to 0.9.3. 
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.9.3.
 2017-12-05 16:37:43 +01:00
Ludovic Courtès
f00b85ff8d
gnu: commencement: Do not graft early bootstrap packages. 
By definition, these packages are not depended on at run time by any of
the packages we use.  Thus it does not make sense to inherit grafts.
Furthermore, those grafts would often lead to extra overhead for users
who would end up downloading those "-boot0" packages just to build
package replacements that are in fact not going to be used.

This reverts parts of f1597427f2 and
ce27857f71.

Reported by Christopher Baines at
<https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00058.html>.

* gnu/packages/commencement.scm (file-boot0, binutils-boot0): Use plain
'inherit' instead of 'package/inherit'.
 2017-12-05 11:50:00 +01:00
Pierre Langlois
d20b7384b7
gnu: Add clementine. 
* gnu/packages/music.scm (clementine): New variable.
* gnu/packages/patches/clementine-use-openssl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-12-05 08:05:06 +01:00
Pierre Langlois
43925703e8
gnu: Add libmygpo-qt. 
* gnu/packages/music.scm (libmygpo-qt): New variable.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-12-05 08:05:06 +01:00
Efraim Flashner
1fa37d1b55
gnu: bluez-alsa: Add missing file-name field. 
* gnu/packages/audio.scm (bluez-alsa)[source]: Add file-name field.
 2017-12-04 22:25:27 +02:00
Ricardo Wurmus
dba33ca3da
gnu: Add bluez-alsa. 
* gnu/packages/audio.scm (bluez-alsa): New variable.
 2017-12-04 20:56:06 +01:00
Ricardo Wurmus
0c45a6a4c8
gnu: Add ortp. 
* gnu/packages/telephony.scm (ortp): New variable.
 2017-12-04 20:54:37 +01:00
Ricardo Wurmus
80e2524c9a
gnu: Add bctoolbox. 
* gnu/packages/telephony.scm (bctoolbox): New variable.
 2017-12-04 20:54:37 +01:00
Ricardo Wurmus
a64d9d56a3
gnu: mbedtls-apache: Build shared library. 
* gnu/packages/tls.scm (mbedtls-apache)[arguments]: Enable building of shared
library.
 2017-12-04 20:54:37 +01:00
Rutger Helling
f79c3ea9ca
gnu: wayland-protocols: Update to 1.12. 
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-12-04 14:30:08 -05:00
Andy Patterson
b142756d9c
gnu: spice: Update to 0.14.0. 
This is a follow-up to commit 9a187b39b7.

* gnu/packages/spice.scm (spice): Update to 0.14.0.
[source]: Remove obsolete patches. Use HTTPS URL.
[inputs]: Add orc.
[home-page]: Update to use https.
* gnu/packages/patches/spice-CVE-2016-9577.patch,
gnu/packages/patches/spice-CVE-2016-9578-1.patch,
gnu/packages/patches/spice-CVE-2016-9578-2.patch,
gnu/packages/patches/spice-CVE-2017-7506.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-12-04 14:05:23 -05:00
Leo Famulari
982caeab6f
gnu: bazaar: Fix CVE-2017-14176. 
* gnu/packages/patches/bazaar-CVE-2017-14176.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (bazaar)[source]: Use it.
 2017-12-04 13:13:11 -05:00
Ludovic Courtès
c7699ebeb4
gnu: git: Remove unreliable git-svn tests. 
Reported in <https://bugs.gnu.org/29546>
by Mark H Weaver <mhw@netris.org>.

* gnu/packages/version-control.scm (git)[arguments]: In 'patch-tests'
phase, delete three git-svn tests.
 2017-12-04 16:35:43 +01:00
nee
6de3d1762b
gnu: elixir: Update to 1.5.2 and disable failing tests. 
* gnu/packages/elixir.scm (elixir)[origin]: Update to 1.5.2.
[arguments]: Patch the shebang of mix. Disable failing tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-04 10:36:48 +01:00
nee
8cbb58918c
gnu: erlang: Update to 20.1. 
* gnu/packages/erlang.scm (erlang): Update to 20.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-04 10:36:48 +01:00
Tobias Geerinckx-Rice
78bae62a25
gnu: protobuf: Update to 3.5.0. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.0.
 2017-12-04 08:13:55 +01:00
Tobias Geerinckx-Rice
74327874a5
gnu: you-get: Update to 0.4.995. 
* gnu/packages/video.scm (you-get): Update to 0.4.995.
 2017-12-04 08:13:55 +01:00
Tobias Geerinckx-Rice
1740cb779a
gnu: ghc-async: Update to 2.1.1.1. 
* gnu/packages/haskell.scm (ghc-async): Update to 2.1.1.1.
 2017-12-04 08:13:55 +01:00
Tobias Geerinckx-Rice
8301d739fa
gnu: ghc-alex: Update to 3.2.3. 
* gnu/packages/haskell.scm (ghc-alex): Update to 3.2.3.
[arguments]: Run tests.
 2017-12-04 08:13:30 +01:00
Tobias Geerinckx-Rice
7e95d0fda7
gnu: ghc-comonad: Remove duplicate input. 
* gnu/packages/haskell.scm (ghc-comonad)[inputs]: Remove ghc-contravariant.
Order alphabetically to make this less likely to happen again.
 2017-12-04 04:40:15 +01:00
Tobias Geerinckx-Rice
f745999773
gnu: di: Update to 4.44. 
* gnu/packages/admin.scm (di): Update to 4.44.
 2017-12-04 04:40:15 +01:00
Tobias Geerinckx-Rice
1d3c059bbf
gnu: eolie: Update to 0.9.13. 
* gnu/packages/gnome.scm (eolie): Update to 0.9.13.
 2017-12-04 04:40:14 +01:00
Tobias Geerinckx-Rice
440c4273b8
gnu: coda: Update to 2.18.3. 
* gnu/packages/maths.scm (coda): Update to 2.18.3.
 2017-12-04 04:40:14 +01:00
Tobias Geerinckx-Rice
d3cdb25d17
gnu: python-scikit-learn: Update to 0.19.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.1.
 2017-12-04 04:40:14 +01:00
Ludovic Courtès
8d7f1d7368
gnu: guix: Update snapshot to 3fb6464. 
* gnu/packages/package-management.scm (guix): Update to 3fb6464.
 2017-12-04 00:08:13 +01:00
Rutger Helling
b901043604
gnu: you-get: Update to 0.4.990. 
* gnu/packages/video.scm (you-get): Update to 0.4.990.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-12-03 23:49:56 +01:00
Ludovic Courtès
4bd70904c7
gnu: shepherd: Avoid "Bad file descriptor" warnings. 
* gnu/packages/patches/shepherd-close-fds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Use it.
 2017-12-03 23:18:53 +01:00
Ricardo Wurmus
98a26dc889
gnu: samplv1: Update to 0.8.5. 
* gnu/packages/music.scm (samplv1): Update to 0.8.5.
 2017-12-03 23:10:57 +01:00
Ricardo Wurmus
54c76c2603
gnu: drumkv1: Update to 0.8.5. 
* gnu/packages/music.scm (drumkv1): Update to 0.8.5.
 2017-12-03 23:10:57 +01:00
Ricardo Wurmus
4a7b1add2a
gnu: synthv1: Update to 0.8.5. 
* gnu/packages/music.scm (synthv1): Update to 0.8.5.
 2017-12-03 23:10:57 +01:00
Ricardo Wurmus
d112e5a8c2
gnu: Add kallisto. 
* gnu/packages/bioinformatics.scm (kallisto): New variable.
 2017-12-03 18:38:58 +01:00
Ricardo Wurmus
803a9d5c37
gnu: calf: Update to 0.90.0. 
* gnu/packages/audio.scm (calf): Update to 0.90.0.
 2017-12-03 18:31:48 +01:00
Ricardo Wurmus
a4527622ee
gnu: jack-2: Update to 1.9.11-RC1. 
* gnu/packages/audio.scm (jack-2): Update to 1.9.11-RC1.
 2017-12-03 18:31:48 +01:00
Ricardo Wurmus
952837c824
gnu: guitarix: Update to 0.36.1. 
* gnu/packages/audio.scm (guitarix): Update to 0.36.1.
 2017-12-03 18:31:48 +01:00
Ricardo Wurmus
75bbc3c2e2
gnu: faust-2: Remove inherited phase. 
* gnu/packages/audio.scm (faust-2)[arguments]: Remove build phase
"fix-permissions".
 2017-12-03 18:31:48 +01:00
Ricardo Wurmus
a36047422f
gnu: faust: Update to 0.9.90. 
* gnu/packages/audio.scm (faust): Update to 0.9.90.
[source]: Download sources via git-fetch.
[arguments]: Add phase "fix-permissions".
 2017-12-03 18:31:48 +01:00
Ricardo Wurmus
518957128f
gnu: Add gst123. 
* gnu/packages/gstreamer.scm (gst123): New variable.
 2017-12-03 18:31:47 +01:00
Marius Bakke
a850cbdd43
gnu: readline: Remove obsolete post-install phase. 
The 'strip' phase does this unconditionally now.

* gnu/packages/readline.scm (readline)[arguments]<#:phases>: Remove.
 2017-12-03 17:47:18 +01:00
Marius Bakke
de3a1ac648
gnu: libunistring: Update to 0.9.8. 
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.8.
 2017-12-03 16:36:43 +01:00
Marius Bakke
c6bc8e22e9
gnu: glibc: Don't use full version string in locale path. 
This is a follow-up to commit ee3ebf1a35.
Fixes <https://bugs.gnu.org/29537>.

* gnu/packages/base.scm (glibc/linux)[version]: Change to 2.26.91-gaaa2eb83b8.
[source](uri): Adjust accordingly.
[arguments]: Use VERSION-MAJOR+MINOR for locales path.
(glibc-locales, glibc-utf8-locales): Likewise.
* guix/packages.scm (patch-and-repack): Likewise.
* guix/profiles.scm (ca-certificate-bundle, profile-derivation): Likewise.
 2017-12-03 16:23:43 +01:00
Marius Bakke
0a3b5bb3e1
gnu: weechat: Update to 2.0. 
* gnu/packages/irc.scm (weechat): Update to 2.0.
 2017-12-03 15:39:00 +01:00
Marius Bakke
d0d666f97b
gnu: libwebp: Update to 0.6.1. 
* gnu/packages/image.scm (libwebp): Update to 0.6.1.
 2017-12-03 15:39:00 +01:00
Marius Bakke
3d0ffa6cae
gnu: git: Update to 2.15.1. 
* gnu/packages/version-control.scm (git): Update to 2.15.1.
 2017-12-03 15:39:00 +01:00
Nicolas Goaziou
4016de5e7c
gnu: wireshark: Update to 2.4.3. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.3.
 2017-12-03 15:27:23 +01:00
Marius Bakke
371193ecbf
gnu: readline: Update to 7.0.3. 
* gnu/packages/readline.scm (patch-url, readline-patch): New procedures.
(patch-series): New macro.
(%patch-series-7.0): New variable.
(readline)[version]: Include patchlevel.
[source](uri): Adjust to version suffix.
[source](patches): Add %PATCH-SERIES-7.0.
 2017-12-03 15:04:46 +01:00
Nicolas Goaziou
993490d301
gnu: giac-xcas: Update to 1.4.9-33. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-33.
 2017-12-03 14:40:24 +01:00
Alex Sassmannshausen
8c80f8ef9b
gnu: guile-dsv: Update to 0.2.1 & correct sha256. 
* gnu/packages/guile.scm (guile-dsv): Update to 0.2.1.
 2017-12-03 14:17:46 +01:00
Efraim Flashner
8c94393c6a
gnu: mescc-tools: Update to 0.3. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.3.
[supported-systems]: Remove field.
 2017-12-03 08:47:28 +02:00
Efraim Flashner
211e804758
gnu: u-boot: Update to 2017.11. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.11.
 2017-12-03 08:47:28 +02:00
Efraim Flashner
72f6caadcb
gnu: elogind: Add file-name for source. 
* gnu/packages/freedesktop.scm (elogind)[source]: Add file-name field.
 2017-12-02 22:41:27 +02:00
Marius Bakke
5bda082496
gnu: libuv: Update to 1.18.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.18.0.
 2017-12-02 18:28:57 +01:00
Tobias Geerinckx-Rice
5247e79e5f
gnu: youtube-dl: Update to 2017.12.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.12.02.
 2017-12-02 16:22:49 +01:00
Tobias Geerinckx-Rice
63f5656c78
gnu: mtr: Don't mention only ICMP ECHO. 
* gnu/packages/networking.scm (mtr)[description]: Allude to the fact that
mtr can send more than mere ICMP.
 2017-12-02 16:22:49 +01:00
Ludovic Courtès
c85f069148
gnu: man-db: Use 'groff-minimal' at run time. 
This reduces the closure of man-db from 175 MiB to 97 MiB.

* gnu/packages/man.scm (man-db)[native-inputs]: Add GROFF.
[inputs]: Replace GROFF with GROFF-MINIMAL.
[arguments]: #:configure-flags now refers to GROFF-MINIMAL.
Add #:disallowed-references.
 2017-12-02 15:06:02 +01:00
Ludovic Courtès
3c97322a6e
gnu: Add groff-minimal. 
* gnu/packages/groff.scm (groff-minimal): New variable.
 2017-12-02 15:06:02 +01:00
Ludovic Courtès
63b31b567e
gnu: xfig: Don't ignore 'xmkmf' exit code. 
Suggested by Mike Gerwitz <mtg@gnu.org>.

* gnu/packages/xfig.scm (xfig)[arguments]: Use 'invoke' when invoking
'xmkmf'.
 2017-12-02 15:06:02 +01:00
Manolis Ragkousis
763269f9ac
gnu: keepassxc: Update to 2.2.2. 
* password-utils.scm (keepassxc): Update to 2.2.2.
 2017-12-02 13:51:14 +02:00
Tobias Geerinckx-Rice
31e557c1d9
gnu: nss-certs: Update to 3.34.1. 
* gnu/packages/certs.scm (nss-certs): Update to 3.34.1.
 2017-12-02 02:00:07 +01:00
Ludovic Courtès
2e7825bc7b
gnu: guile-sly: Do not propagate Guile. 
* gnu/packages/guile.scm (guile-sly)[propagated-inputs]: Move GUILE-2.2
to...
[inputs]: ... here.
 2017-12-01 18:47:34 +01:00
Tobias Geerinckx-Rice
27c4796ef9
gnu: tor: Update to 3.1.9 [security fixes]. 
This release contains fixes for TROVE-2017-{009,010,011,012,013}.

* gnu/packages/tor.scm (tor): Update to 3.1.9.
 2017-12-01 16:45:19 +01:00
Ricardo Wurmus
b9fb70ca65
gnu: glusterfs: Replace hardcoded FHS references. 
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
 2017-12-01 16:41:23 +01:00
Tobias Geerinckx-Rice
b59a8fd49a
gnu: Add mtr. 
* gnu/packages/networking.scm (mtr): New public variable.
 2017-12-01 16:11:57 +01:00
Tobias Geerinckx-Rice
3f691f7196
gnu: ghc-blaze-builder: Update to 0.4.0.2. 
* gnu/packages/haskell.scm (ghc-blaze-builder): Update to 0.4.0.2.
 2017-12-01 16:08:59 +01:00
Tobias Geerinckx-Rice
17c3a50dfd
gnu: ghc-asn1-types: Update to 0.3.2. 
* gnu/packages/haskell-crypto.scm (ghc-asn1-types): Update to 0.3.2.
 2017-12-01 16:08:58 +01:00
Tobias Geerinckx-Rice
c24bfc3d2c
gnu: ghc-asn1-encoding: Update to 0.9.5. 
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding): Update to 0.9.5.
 2017-12-01 16:08:58 +01:00
Tobias Geerinckx-Rice
92cd94648c
gnu: ghc-array: Update to 0.5.2.0. 
* gnu/packages/haskell.scm (ghc-array): Update to 0.5.2.0.
 2017-12-01 16:08:58 +01:00
Tobias Geerinckx-Rice
1a1cf03f24
gnu: ghc-aeson-qq: Update to 0.8.2. 
* gnu/packages/haskell-web.scm (ghc-aeson-qq): Update to 0.8.2.
 2017-12-01 16:08:58 +01:00
Tobias Geerinckx-Rice
f4548394d4
gnu: java: Fix several synopses & descriptions. 
* gnu/packages/java.scm (java-plexus-classworlds)[description]: Fix typo and
use @code.
(java-plexus-container-default-bootstrap)[synopsis]: Hyphenate for clarity,
as done in the description.
[description]: Fix typo and use @dfn.
(java-jmh)[description]: Fix typo.
(java-xerial-core)[synopsis, description]: Fix typos.
 2017-12-01 16:08:57 +01:00
Ludovic Courtès
c7ffbfe9f9
gnu: guile: Add version 2.2.3. 
* gnu/packages/guile.scm (guile-2.2.3): New variable.
 2017-12-01 16:00:15 +01:00
Ludovic Courtès
8ad4f0aa31
gnu: gnome-default-applications: Add Evince for PDF and PS. 
* gnu/packages/gnome.scm (gnome-default-applications)[propagated-inputs]:
Add EVINCE.
[arguments]: Associate Evince with application/pdf and
application/postscript.
 2017-12-01 16:00:14 +01:00
Tobias Geerinckx-Rice
e695d79dc6
gnu: ghc-edisoncore: Fix typo in synopsis. 
* gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
 2017-12-01 15:03:13 +01:00
Tobias Geerinckx-Rice
fb5569b0c8
gnu: man-pages: Update to 4.14. 
* gnu/packages/man.scm (man-pages): Update to 4.14.
 2017-12-01 15:03:12 +01:00
Dave Love
f1de0e37d5
gnu: openfoam: Clean up to reduce closure. 
This saves ~1GB.

* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-01 11:28:48 +01:00
ng0
6101cad4d1
gnu: Add geomyidae. 
* gnu/packages/web.scm (geomyidae): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-01 11:28:48 +01:00
Mike Gerwitz
491cbd3553
gnu: Add emacs-evil-matchit. 
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-01 11:28:48 +01:00
Ludovic Courtès
c03ba83c17
gnu: git: Run tests sequentially. 
Fixes <https://bugs.gnu.org/29512>.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.

* gnu/packages/version-control.scm (git)[arguments]: Add
 #:parallel-tests?.
 2017-12-01 11:28:48 +01:00
Ludovic Courtès
f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules. 
* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
 2017-12-01 11:28:48 +01:00
Mark H Weaver
1776d5cd18
gnu: linux-libre: Update to 4.14.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
 2017-12-01 01:37:08 -05:00
Mark H Weaver
6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
 2017-12-01 01:36:21 -05:00
Mark H Weaver
8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
 2017-12-01 01:35:44 -05:00
Leo Famulari
2fc4709368
gnu: libtiff: Update to 4.0.9. 
* gnu/packages/image.scm (libtiff): Update to 4.0.9.
[source]: Remove obsolete patches.
* gnu/packages/patches/libtiff-CVE-2016-10688.patch,
gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-tiffgetfield-bugs.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: Delete
files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-11-30 16:35:44 -05:00
Rutger Helling
34a28c13f5
gnu: qemu: Enable seccomp support. 
* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-30 18:14:57 +01:00
ng0
e33904336f
gnu: fish-guix: Update to 0.1.2.1. 
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-30 18:14:57 +01:00
Vasile Dumitrascu
1d0865c19a
gnu: monero-core: Fix missing dependency. 
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-30 18:14:57 +01:00
Mike Gerwitz
1d752e4345
gnu: Add xautolock. 
* gnu/packages/xdisorg.scm (xautolock): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-30 18:14:56 +01:00
Ricardo Wurmus
117d8cc40e
gnu: jellyfish: Update to 2.2.7. 
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
 2017-11-30 17:38:36 +01:00
Ricardo Wurmus
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus
b50a4b1391
gnu: r-cowplot: Update to 0.9.1. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4. 
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus
0382d37734
gnu: r-rmarkdown: Update to 1.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus
e35cac9581
gnu: r-batchjobs: Update to 1.7. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
 2017-11-30 17:28:25 +01:00
Ricardo Wurmus
05fd8e6b46
gnu: r-pracma: Update to 2.1.1. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
 2017-11-30 17:28:24 +01:00
Ricardo Wurmus
9b8d02011f
gnu: r-annotationhub: Update to 2.10.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
 2017-11-30 17:28:24 +01:00
Ricardo Wurmus
87e91a9fff
gnu: r-msnid: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
 2017-11-30 17:28:23 +01:00
Ricardo Wurmus
439492654b
gnu: r-maldiquant: Update to 1.17. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
 2017-11-30 17:28:23 +01:00
Ricardo Wurmus
06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
 2017-11-30 17:28:22 +01:00
Ricardo Wurmus
1ce5d32b49
gnu: r-limma: Update to 3.34.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
 2017-11-30 17:28:22 +01:00
Ricardo Wurmus
8131cf4162
gnu: r-variantannotation: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
 2017-11-30 17:28:21 +01:00
Ricardo Wurmus
d2081a17ed
gnu: r-getopt: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
 2017-11-30 17:28:20 +01:00
Ricardo Wurmus
4220ab0c81
gnu: r-gseabase: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
 2017-11-30 17:28:20 +01:00
Ricardo Wurmus
d259932ca8
gnu: r-dexseq: Update to 1.24.1. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
 2017-11-30 17:28:19 +01:00
Ricardo Wurmus
058644c0f2
gnu: r-deseq2: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
 2017-11-30 17:28:18 +01:00
Ricardo Wurmus
654c29aceb
gnu: r-annotate: Update to 1.56.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
 2017-11-30 17:28:18 +01:00
Ricardo Wurmus
814fd32670
gnu: r-circlize: Update to 0.4.2. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
 2017-11-30 17:28:17 +01:00
Ricardo Wurmus
d76f987c42
gnu: r-rcpp: Update to 0.12.14. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
 2017-11-30 17:28:17 +01:00
Ricardo Wurmus
26007cd5ee
gnu: r-timedate: Update to 3042.101. 
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus
87313f64d9
gnu: r-stringi: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus
3e11bddcc7
gnu: r-devtools: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus
20b0f8a5ec
gnu: r-mclust: Update to 5.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus
a0a3184925
gnu: r-car: Update to 2.1-6. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus
c8fb593502
gnu: r-sn: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus
b796f9e6be
gnu: r-openssl: Update to 0.9.9. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus
09c0107f75
gnu: r-hms: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
 2017-11-30 17:28:12 +01:00
Ricardo Wurmus
6c84c735a5
gnu: r-dendextend: Update to 1.6.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
 2017-11-30 17:28:12 +01:00
Ricardo Wurmus
18a11c6d62
gnu: r-recipes: Update to 0.1.1. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
 2017-11-30 17:28:11 +01:00
Ricardo Wurmus
6c8c8c6b75
gnu: Add r-broom. 
* gnu/packages/cran.scm (r-broom): New variable.
 2017-11-30 17:28:10 +01:00
Ricardo Wurmus
cdc129dc53
gnu: Add r-psych. 
* gnu/packages/cran.scm (r-psych): New variable.
 2017-11-30 17:28:10 +01:00