Commit graph

14579 commits

Author SHA1 Message Date
Ricardo Wurmus
7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
Ricardo Wurmus
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
Ricardo Wurmus
82b281fe12
gnu: r-e1071: Update to 1.6-8.
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
ac5e810205
gnu: r-bbmisc: Update to 1.11.
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
Ricardo Wurmus
f1870aef99
gnu: r-backports: Update to 1.0.5.
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus
c6e40db528
gnu: r-ade4: Update to 1.7-6.
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
Ricardo Wurmus
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
7267f358a0
gnu: r-stringr: Update to 1.2.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
Ricardo Wurmus
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus
9948b8e24c
gnu: r-digest: Update to 0.6.12.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus
344e4741a1
gnu: r-survival: Update to 2.41-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
Ricardo Wurmus
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
Ricardo Wurmus
e15f962fef
gnu: r-htmltable: Update to 1.9.
* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus
d3812fb233
gnu: r-curl: Update to 2.4.
* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus
4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus
acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
Ricardo Wurmus
da250f733a
gnu: r-bioccheck: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
Ricardo Wurmus
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
Ricardo Wurmus
bf6dcf59eb
gnu: Add r-commonmark.
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus
1cbb07a8e4
gnu: Add r-desc.
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
Ricardo Wurmus
67deeea41b
gnu: r-readr: Update to 1.1.0.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
Ricardo Wurmus
aad7808526
gnu: r-jsonlite: Update to 1.3.
* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
Ricardo Wurmus
538bce2472
gnu: ldc-bootstrap: Delete failing test.
* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
Ludovic Courtès
cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
Ludovic Courtès
7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
  #:configure-flags.  Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
Ludovic Courtès
234ea3d653
gnu: guile-aspell: Update to 0.4.
* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
Ludovic Courtès
79f912c710
Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."
This reverts commit 01fe019166,
which was unneeded because IlmBase is already listed as 'Requires'
in 'OpenEXR.pc'.
2017-04-05 22:45:41 +02:00
Tobias Geerinckx-Rice
b28187cd0c
Revert "gnu: bc: Update to 1.07."
This reverts commit dfee7daedb.  It causes
the linux-libre@4.9 build to hang (command-line usage works fine).
2017-04-05 21:23:41 +02:00
Kei Kebreau
cd381c317b
gnu: Move audacity to audio.scm.
* gnu/packages/audacity.scm: Remove file and move audacity...
* gnu/packages/audio.scm: ...here.
* gnu/local.mk: Remove reference to removed file.
2017-04-05 15:08:14 -04:00
Ricardo Wurmus
1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
Ricardo Wurmus
beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
Ben Woodcroft
fc5b12879f
gnu: diamond: Update to 0.8.37.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00