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Author SHA1 Message Date
Oleg Pykhalov
53ac6977ac
gnu: tome4: Clean up snippet. 
* gnu/packages/games.scm (tome4)[source](snippet): Use a single
'substitute*' call instead of 'for-each'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-29 23:03:47 +02:00
Marius Bakke
baa6b77789
gnu: vim: Update to 8.0.0808. 
* gnu/packages/vim.scm (vim): Update to 8.0.0808.
[arguments]: Remove obsolete 'make-bit-reproducable' phase.
(vim-full): Update to 8.0.0808.
[arguments]: Remove 'drop-failing-tests' phase.
 2017-07-29 23:01:17 +02:00
Kyle Meyer
24b115dff5
gnu: emacs: Check GUIX_ENVIRONMENT when autoloading packages. 
Check the environment profile so that we autoload packages that are given as
arguments to "guix environment" but are not in the system or user profile.
Note that the union of Emacs packages in the system, user, and environment
profiles will be autoloaded even when --pure was passed to "guix environment",
because it's not clear how to detect that --pure was given.

* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Add Emacs packages from GUIX_ENVIRONMENT profile.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:17 +03:00
Kyle Meyer
d0a5205292
gnu: Remove emacs-seq. 
The seq.el library has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (emacs-seq): Remove variable.
(flycheck, emacs-cider)[propagated-inputs]: Remove emacs-seq.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:17 +03:00
Kyle Meyer
469c7ce058
gnu: Remove let-alist. 
The let-alist package has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (let-alist): Remove variable.
(flycheck, emacs-pdf-tools, emacs-sx)[propagated-inputs]: Remove let-alist.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-07-29 23:19:16 +03:00
Alex Kost
b1a6a70684
gnu: emacs-ess: Install elisp files in "guix.d". 
Fixes <http://bugs.gnu.org/27686>.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.

* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add LISPDIR to
'make-flags' to install *.el files into "guix.d" sub-directory.
 2017-07-29 23:18:56 +03:00
Danny Milosavljevic
444f9dccc2
gnu: grub-efi: Add mtools input. 
* gnu/packages/bootloaders.scm: Add (gnu packages mtools).
(grub-efi)[inputs]: Add mtools.
[arguments]: Add phase "use-absolute-mtools-path".
 2017-07-29 19:24:04 +02:00
Julien Lepiller
303690c405
gnu: Add coq-interval. 
* gnu/packages/ocaml.scm (coq-interval): New variable.
 2017-07-29 15:19:07 +02:00
Julien Lepiller
b09c4244f7
gnu: Add coq-coquelicot. 
* gnu/packages/ocaml.scm (coq-coquelicot): New variable.
 2017-07-29 15:19:03 +02:00
Julien Lepiller
380c65de94
gnu: Add coq-mathcomp. 
* gnu/packages/ocaml.scm (coq-mathcomp): New variable.
 2017-07-29 15:18:59 +02:00
Julien Lepiller
88191acee2
gnu: Add coq-gappa. 
* gnu/packages/ocaml.scm (coq-gappa): New variable.
 2017-07-29 15:18:54 +02:00
Julien Lepiller
d163d97d92
gnu: Add coq-flocq. 
* gnu/packages/ocaml.scm (coq-flocq): New variable.
 2017-07-29 15:18:45 +02:00
Marius Bakke
8f82110492
gnu: gnupg: Update to 2.1.22. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.22.
 2017-07-29 14:47:24 +02:00
Ben Woodcroft
a9085f0c5c
gnu: metabat: Update to 2.11.2. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.2.
 2017-07-29 22:37:47 +10:00
Jan Nieuwenhuizen
0e016722ee
gnu: mes: Update to 0.9. 
* gnu/packages/mes.scm (mes): Update to 0.9.
[arguments]: Delete `strip' phase.
[synopsis]: Rewrite to be more descriptive.
[description]: Include expanded acronym.
 2017-07-29 14:33:19 +02:00
Tobias Geerinckx-Rice
9f9b7a0d01
gnu: gptfdisk: Update to 1.0.3. 
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.3.
 2017-07-29 14:15:48 +02:00
Christopher Baines
730ed6ec8b
gnu: services: admin: Add tailon. 
* gnu/services/admin.scm
  (<tailon-configuration>, <tailon-configuration-file>): New record types.
  (tailon-configuration-files-string, tailon-shepherd-service): New
  procedures.
  (%tailon-accounts, tailon-service-type: New variables.
* doc/guix.texi (Monitoring Services: Document the Tailon service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm.
* gnu/tests/admin.scm: New file.
 2017-07-29 12:45:03 +01:00
Arun Isaac
b5244fcb49
gnu: arandr: Remove make-xrandr-available phase. 
wrap-program functionality is already provided by python-build-system.

* gnu/packages/xdisorg.scm (arandr): Remove make-xrandr-available phase.
 2017-07-29 16:47:37 +05:30
Oleg Pykhalov
e8d9a87862
gnu: Add emacs-rpm-spec-mode. 
* gnu/packages/emacs.scm (emacs-rpm-spec-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-29 16:41:34 +05:30
Jan Nieuwenhuizen
3b56776fb8
gnu: mescc-tools: Update to 0.2. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.2.
 2017-07-29 11:37:04 +02:00
Mark H Weaver
38ba8a6116
gnu: linux-libre: Update to 4.12.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.4.
(%linux-libre-hash): Update hash.
 2017-07-28 21:08:51 -04:00
Mark H Weaver
dfa0c66cc9
gnu: linux-libre@4.9: Update to 4.9.40. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.40.
 2017-07-28 21:08:19 -04:00
Mark H Weaver
6b96478c6d
gnu: linux-libre@4.4: Update to 4.4.79. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.79.
 2017-07-28 21:07:31 -04:00
Tobias Geerinckx-Rice
4f9dd97e65
gnu: sssd: Update to 1.15.3. 
* gnu/packages/sssd.scm (sssd): Update to 1.15.3.
[native-inputs]: Add util-linux.
 2017-07-29 01:08:17 +02:00
Tobias Geerinckx-Rice
d02e19aa2c
gnu: bind: Update to 9.11.2. 
* gnu/packages/dns.scm (isc-bind): Update to 9.11.2.
 2017-07-29 00:32:00 +02:00
Oleg Pykhalov
32c4a5060e
gnu: emacs-auctex: Update to 11.91.0. 
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.91.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-28 23:30:41 +02:00
Oleg Pykhalov
1f88f189eb
gnu: Add tome4. 
* gnu/packages/games.scm (tome4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-28 23:30:41 +02:00
Danny Milosavljevic
1975c754f4
bootloader: Use <menu-entry> for the bootloader side. 
* gnu/bootloader.scm (menu-entry-device-mount-point): New variable.  Export it.
(<menu-entry>: New field "device".
* gnu/bootloader/grub.scm (grub-confgiuration-file): Handle <menu-entry>
entries.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Handle
<menu-entry> entries.
* gnu/system.scm (menu->entry->boot-parameters): Delete variable.
(boot-parameters->menu-entry): New variable.  Export it.
(operating-system-bootcfg): Make OLD-ENTRIES a list of <menu-entry>.
* guix/script/system.scm (reinstall-bootloader): Fix bootcfg usage.
(perform-action): Fix bootcfg usage.
 2017-07-28 21:56:18 +02:00
Ludovic Courtès
9ca8aa38ec
gnu: guix: Add dependency on Guile-Git. 
* gnu/packages/package-management.scm (guix)[arguments] <wrap-program>:
Add Guile-Git to PATH.
[propagated-inputs]: Add GUILE-GIT.
(guile2.0-guix)[propagated-inputs]: Add GUILE2.0-GIT.
 2017-07-28 18:09:44 +02:00
Ludovic Courtès
3a53759807
gnu: guile-git: Update snapshot. 
* gnu/packages/guile.scm (guile-git): Update to commit e156a10.
[native-inputs]: Add TEXINFO.
 2017-07-28 18:09:43 +02:00
Ludovic Courtès
6f0f55148d
gnu: le-certs: Create OpenSSL hash symlinks. 
* gnu/packages/certs.scm (le-certs)[arguments]: Run 'c_rehash' on the
result.
[native-inputs]: New fields.
 2017-07-28 18:09:43 +02:00
Tobias Geerinckx-Rice
c4b006ba12
gnu: btrfs-progs: Update to 4.12. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.12.
[outputs]: Remove inaccurate comment on size.
 2017-07-28 16:32:04 +02:00
Ben Woodcroft
f112bd26ae
gnu: redis: Update to 4.0.1. 
* gnu/packages/databases.scm (redis): Update to 4.0.1.
 2017-07-28 21:10:49 +10:00
Ben Woodcroft
ac01cb0790
gnu: ruby-json-pure: Update to 2.1.0. 
* gnu/packages/ruby.scm (ruby-json-pure): Update to 2.1.0.
[arguments]: Replace 'replace-git-ls-files' phase with 'fix-rakefile'
and 'regenerate-gemspec' phases.
[inputs]: Remove ruby-permutation, ruby-utils, ragel. Add ruby-test-unit,
ruby-simplecov.
 2017-07-28 20:18:53 +10:00
Ben Woodcroft
9c14bc7a4d
gnu: bundler: Update to 1.15.3. 
* gnu/packages/ruby.scm (bundler): Update to 1.15.3.
 2017-07-28 20:18:53 +10:00
Ben Woodcroft
a2a558147a
gnu: ruby-ffi: Update to 1.9.18. 
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.18.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft
00eeb45fca
gnu: redis: Update to 4.0.0. 
* gnu/packages/databases.scm (redis): Update to 4.0.0.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft
efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
 2017-07-28 20:18:52 +10:00
Ben Woodcroft
26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0. 
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
 2017-07-28 20:18:51 +10:00
Tobias Geerinckx-Rice
0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
 2017-07-28 01:02:40 +02:00
Tobias Geerinckx-Rice
73fe4552aa
gnu: gptfdisk: Update description. 
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice
0193e3be53
gnu: goffice: Update to 3.24.2.1. 
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
 2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice
c8fc9a379b
gnu: shotwell: Update to 0.26.2. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
 2017-07-28 01:02:39 +02:00
Marius Bakke
fb2715720a
gnu: whois: Update to 5.2.17. 
* gnu/packages/networking.scm (whois): Update to 5.2.17.
 2017-07-28 00:07:45 +02:00
Marius Bakke
bd51224936
gnu: nss, nss-certs: Update to 3.32. 
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes>

* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
 2017-07-28 00:07:28 +02:00
Marius Bakke
6571754462
gnu: nspr: Update to 4.16. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
 2017-07-27 22:15:27 +02:00
Marius Bakke
90335ccea6
gnu: python-cryptography: Update to 2.0.2. 
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
 2017-07-27 22:15:26 +02:00
Leo Famulari
b2973d9634
gnu: subversion: Update to 1.8.18. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
 2017-07-27 14:33:32 -04:00
Leo Famulari
6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7. 
This leaves net-tools-for-tests unchanged.

Fixes <https://bugs.gnu.org/27811>.

* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
 2017-07-27 13:39:42 -04:00
Ludovic Courtès
412701b0e5
services: guix-publish: Run in a UTF-8 locale. 
Works around <https://bugs.gnu.org/26948>.

* gnu/services/base.scm (guix-publish-shepherd-service): Pass
  #:environment-variables to 'make-forkexec-constructor'.
 2017-07-27 14:51:03 +02:00
Ludovic Courtès
138fe41198
system: Add 'grep --color' alias in '.bash_profile' skeleton. 
* gnu/system/shadow.scm (default-skeletons)[profile]: Add 'grep' alias.
 2017-07-27 14:44:28 +02:00
Julian Graham
a812aff99c
gnu: gzochi: Update to 0.11.1. 
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
  (gzochi)[arguments]: Remove patch for `-Werror', which is no longer
  necessary.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-27 11:47:51 +02:00
Ludovic Courtès
f1be6f5b5a
gnu: openmpi: Add "static" output. 
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
 2017-07-27 11:47:50 +02:00
Ricardo Wurmus
8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
 2017-07-27 10:04:09 +02:00
Ricardo Wurmus
620b0468e9
gnu: Add cowsay. 
* gnu/packages/games.scm (cowsay): New variable.
 2017-07-27 10:03:37 +02:00
Tobias Geerinckx-Rice
56ab0f0c6d
gnu: nnn: Update to 1.3. 
* gnu/packages/admin.scm (nnn): Update to 1.3.
 2017-07-27 05:03:33 +02:00
Dave Love
efcacc17c7
gnu: openmpi: Enable SGE support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
 #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0
217ce5702c
gnu: mg: Add new phase to find 'diff'. 
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0
bcd1544dd2
gnu: mg: Fetch source via HTTPS. 
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
ng0
1a5a8afea0
gnu: mg: Update to 20170401. 
* gnu/packages/text-editors.scm (mg): Update to 20170401.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 23:13:52 +02:00
Danny Milosavljevic
9ea61b1c6f
gnu: Add python-flask-principal. 
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
 2017-07-26 21:52:30 +02:00
Tobias Geerinckx-Rice
9d9fc39946
gnu: Add lziprecover. 
* gnu/packages/compression.scm (lziprecover): New variable.
 2017-07-26 19:38:59 +02:00
Leo Famulari
f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS. 
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
 2017-07-26 12:06:52 -04:00
Ludovic Courtès
bcd757fdb4
gnu: mg: Move to (gnu packages text-editors). 
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
 2017-07-26 11:11:11 +02:00
Andy Wingo
a5130d10fa
gnu: Add fcgiwrap service. 
* doc/guix.texi (Web Services): Add documentation.
* gnu/services/web.scm (<fcgiwrap-configuration>): New record type.
(fcgiwrap-accounts, fcgiwrap-shepherd-service): New service extensions.
(fcgiwrap-service-type): New service type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-26 11:00:04 +02:00
Efraim Flashner
1cae188e61
gnu: glpk: Update to 4.63. 
* gnu/packages/maths.scm (glpk): Update to 4.63.
 2017-07-26 10:15:54 +03:00
Danny Milosavljevic
4f038621a5
gnu: leafpad: Use glib-or-gtk build-system. 
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
 2017-07-26 08:19:47 +02:00
Danny Milosavljevic
ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-07-26 08:18:46 +02:00
Kei Kebreau
8ad40a69d1
gnu: evince: Update to 3.24.1. 
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-25 18:41:05 -04:00
Tobias Geerinckx-Rice
980fe414c1
gnu: hplip: Update to 3.17.7. 
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
 2017-07-25 23:59:21 +02:00
Tobias Geerinckx-Rice
ae03ee4274
gnu: fdisk: Update to 2.0.0a1. 
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
 2017-07-25 23:58:34 +02:00
Tobias Geerinckx-Rice
aa588d8a38
gnu: sdparm: Update to 1.10. 
* gnu/packages/disk.scm (sdparm): Update to 1.10.
 2017-07-25 23:58:34 +02:00
Oleg Pykhalov
af79852c99
gnu: neofetch: Fix search path. 
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-25 23:07:37 +02:00
Marius Bakke
16fb1e79ca
gnu: chess: Update to 6.2.5. 
* gnu/packages/games.scm (chess): Update to 6.2.5.
 2017-07-25 23:07:37 +02:00
Marius Bakke
4eacb47de0
gnu: feh: Update to 2.19.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
 2017-07-25 22:58:43 +02:00
Marius Bakke
5f02ea1a6d
gnu: notmuch: Update to 0.25. 
* gnu/packages/mail.scm (notmuch): Update to 0.25.
 2017-07-25 22:58:43 +02:00
Kei Kebreau
4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2. 
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
 2017-07-25 15:29:29 -04:00
Leo Famulari
e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108]. 
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
 2017-07-25 15:25:44 -04:00
Feng Shu
90062885b7
gnu: you-get: Update to 0.4.803. 
* gnu/packages/video.scm (you-get): Update to 0.4.803.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-25 14:44:19 -04:00
Kei Kebreau
c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788. 
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
 2017-07-25 14:11:20 -04:00
Dave Love
bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0. 
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:10:08 +02:00
Dave Love
1f9bff4152
gnu: openmpi: Update to 1.10.7. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-25 18:09:27 +02:00
Ludovic Courtès
70bc608503
gnu: Add guile2.0-git. 
* gnu/packages/guile.scm (guile2.0-git): New variable.
 2017-07-25 17:46:17 +02:00
Ludovic Courtès
726ecfeb3a
gnu: Add guile2.0-bytestructures. 
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
 2017-07-25 17:46:17 +02:00
Kei Kebreau
0093b1262b
gnu: maxima: Ensure binutils are available at runtime. 
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
 2017-07-25 07:58:55 -04:00
Kei Kebreau
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime." 
This reverts commit f2fa86cc82.
Commit 5ea8dbf0c9 fixes the underlying
issue in GNU Common Lisp.
 2017-07-25 07:58:46 -04:00
Kei Kebreau
5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime. 
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
 2017-07-25 07:58:06 -04:00
Mark H Weaver
ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes]. 
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
 2017-07-25 07:32:25 -04:00
Ludovic Courtès
a84ea2191e
system: Add a default '.guile' skeleton. 
* gnu/system/shadow.scm (default-skeletons): Add ".guile".
 2017-07-25 12:23:26 +02:00
Leo Famulari
5b4a6ba044
gnu: xterm: Update to 330. 
* gnu/packages/xorg.scm (xterm): Update to 330.
 2017-07-24 22:54:18 -04:00
Leo Famulari
0e8fed86d8
gnu: dialog: Update to 1.3-20170509. 
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
 2017-07-24 22:54:15 -04:00
Leo Famulari
fce8285e4b
gnu: opus: Update to 1.2.1. 
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
 2017-07-24 17:37:05 -04:00
Christopher Baines
d61a894bfa
gnu: gnome: Add deja-dup. 
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
 2017-07-24 20:05:49 +01:00
Ludovic Courtès
c022e11187
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
 2017-07-24 12:25:08 +02:00
Ludovic Courtès
f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description. 
* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
 2017-07-24 12:05:53 +02:00
Leo Famulari
2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
 2017-07-23 19:05:37 -04:00
Leo Famulari
5391c6c9d2
gnu: bind: Update to 9.11.1-P3. 
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
 2017-07-23 19:05:37 -04:00
Mark H Weaver
c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses). 
This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).

* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here.  Fix misleading
indentation.  Add (gnu packages linux) to the module imports.
 2017-07-23 17:04:51 -04:00
Efraim Flashner
fd900d68a5
gnu: Add support for aarch64's compiled kernel. 
* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
 2017-07-23 23:33:18 +03:00
Efraim Flashner
826adfdb37
gnu: Add xf86-video-freedreno. 
* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
 2017-07-23 23:33:17 +03:00
Efraim Flashner
4adeb3f6e6
gnu: Add u-boot-odroid-c2. 
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
 2017-07-23 23:33:16 +03:00
Efraim Flashner
1313628339
gnu: u-boot: Update to 2017.07. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
 2017-07-23 23:33:13 +03:00
Marius Bakke
846cb73865
gnu: tevent: Update to 0.9.33. 
* gnu/packages/samba.scm (tevent): Update to 0.9.33.
 2017-07-23 22:01:29 +02:00
Marius Bakke
85a5800e52
gnu: talloc: Update to 2.1.10. 
* gnu/packages/samba.scm (talloc): Update to 2.1.10.
 2017-07-23 22:01:29 +02:00
Marius Bakke
fbed150133
gnu: ldb: Update to 1.1.31. 
* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
 2017-07-23 22:01:28 +02:00
Marius Bakke
17c3f1fb67
gnu: cmocka: Update to 1.1.1. 
* gnu/packages/check.scm (cmocka): Update to 1.1.1.
 2017-07-23 22:01:28 +02:00
Marius Bakke
38bb9df150
gnu: tdb: Update to 1.3.14. 
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
 2017-07-23 22:01:28 +02:00
Marius Bakke
09efef3384
gnu: python-scipy: Update to 0.19.1. 
* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke
71d20587a5
gnu: python-matplotlib: Update to 2.0.2. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
 2017-07-23 22:01:28 +02:00
Marius Bakke
9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0. 
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
 2017-07-23 22:01:27 +02:00
Marius Bakke
007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax. 
* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
 2017-07-23 22:01:27 +02:00
Oleg Pykhalov
6e864d0081
gnu: Add xmobar. 
gnu/packages/wm.scm (xmobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-23 15:29:36 -04:00
Efraim Flashner
8f155e3cff
gnu: bash-completion: Update to 2.7. 
* gnu/packages/bash.scm (bash-completion): Update to 2.7.
 2017-07-23 11:05:54 +03:00
ng0
9478c05955
gnu: getmail: Update to 5.1. 
* gnu/packages/mail.scm (getmail): Update to 5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:34:47 -04:00
Ben Woodcroft
f3f68a442c
gnu: metabat: Update to 2.11.1. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft
897ab082b2
gnu: python-plastid: Update to 0.4.8. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft
0620387a59
gnu: bcftools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft
63fa0ffcd4
gnu: samtools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft
4fb6d1280e
gnu: htslib: Update to 1.5. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft
60739965da
gnu: python-pysam: Update to 0.11.2.2. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft
bca2c57658
gnu: bamm: Use htslib-1.3. 
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft
98593f9f51
gnu: bcftools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft
4ab1644049
gnu: samtools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft
a9e4a1e641
gnu: htslib: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft
c842d42593
gnu: samtools: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
 2017-07-23 10:29:34 +10:00
ng0
c62d1a6e6c
gnu: bspwm: Update to 0.9.3. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:17:46 -04:00
ng0
7e3c977da6
gnu: Add oksh. 
* gnu/packages/shells.scm (oksh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:15:21 -04:00
Ryan Moe
36378bd57e
gnu: quassel: Enable TLS. 
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:04:53 -04:00
Tobias Geerinckx-Rice
e745221408
gnu: youtube-dl: Update to 2017.07.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
 2017-07-23 01:59:32 +02:00
Tobias Geerinckx-Rice
4b8b245b83
gnu: mosh: Update to 1.3.2. 
* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
 2017-07-23 01:27:29 +02:00
Ricardo Wurmus
a68a83f015
gnu: Add openmolar. 
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus
2456153adc
gnu: Add python-pyqt+qscintilla. 
* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus
06d04dbcfc
gnu: Add python-qscintilla. 
* gnu/packages/qt.scm (python-qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus
3befd0a97c
gnu: Add qscintilla. 
* gnu/packages/qt.scm (qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus
056468dc5f
gnu: Add cran module. 
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
 2017-07-22 23:48:57 +02:00
Mark H Weaver
30f8349efb
gnu: linux-libre: Update to 4.12.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
 2017-07-22 14:46:00 -04:00
Mark H Weaver
d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
 2017-07-22 14:45:06 -04:00
Mark H Weaver
f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
 2017-07-22 14:44:24 -04:00
Ricardo Wurmus
3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
 2017-07-22 17:31:19 +02:00
Ricardo Wurmus
a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
 2017-07-22 17:22:07 +02:00
Marius Bakke
aa51da7eef
gnu: Remove python-fake-factory leftovers. 
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-22 15:07:45 +02:00
Marius Bakke
c799eb2eb8
gnu: Remove python-fake-factory. 
Superseded by python-faker since ce7911ddae.

* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
Remove variables.
 2017-07-22 14:31:28 +02:00
Marius Bakke
2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
 2017-07-22 14:31:28 +02:00
Marius Bakke
4e52739c61
gnu: Add python-flaky. 
* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
 2017-07-22 14:31:27 +02:00
Marius Bakke
6027cb8a82
gnu: maim: Update to 5.4.64. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
 2017-07-22 14:31:27 +02:00
Marius Bakke
eb2b5f9d03
gnu: slop: Update to 6.3.47. 
* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
 2017-07-22 14:31:27 +02:00
Tobias Geerinckx-Rice
0cd95cefe0
gnu: parallel: Update to 20170722. 
* gnu/packages/parallel.scm (parallel): Update to 20170722.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice
bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice
f7975a3bde
gnu: nano: Update to 2.8.6. 
* gnu/packages/nano.scm (nano): Update to 2.8.6.
 2017-07-22 13:47:25 +02:00
Tobias Geerinckx-Rice
f03d8d67a5
gnu: acct: Update to 6.6.4. 
* gnu/packages/acct.scm (acct): Update to 6.6.4.
 2017-07-22 13:47:25 +02:00