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Author SHA1 Message Date
Liliana Marie Prikler
2dfc574b13
gnu: Add clasp. 
* gnu/packages/maths.scm (clasp): New variable.
 2021-10-24 20:25:02 +02:00
Liliana Marie Prikler
92d3f2673e
gnu: Add libpotassco. 
* gnu/packages/maths.scm (libpotassco): New variable.
 2021-10-24 20:25:01 +02:00
Liliana Marie Prikler
55f6d9e818
etc: completion: Filter gratuitous spaces from available packages. 
Tested with:

  guix environment --{ad-hoc,pure} zsh guix bash-completion coreutils -- zsh
  % fpath=(~/guix/etc/completion/zsh $fpath)
  % autoload -U compinit; compinit

* etc/completion/zsh/_guix (_guix_list_available_packages): Remove spaces.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2021-10-24 20:17:05 +02:00
Ricardo Wurmus
e5a26a1f02
gnu: bowtie: Remove trailing #T. 
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Remove trailing #T from
build phases...
[source]: ...and from the snippet.
 2021-10-24 16:59:39 +00:00
Ricardo Wurmus
2ec601580b
gnu: bowtie: Use TBB 2020. 
* gnu/packages/bioinformatics.scm (bowtie)[inputs]: Replace tbb with tbb-2020.
 2021-10-24 16:58:58 +00:00
Tobias Geerinckx-Rice
2ab53a68fd
gnu: parallel: Update to 20211022. 
* gnu/packages/parallel.scm (parallel): Update to 20211022.
[arguments]: Don't explicitly return #t from phases.
 2021-10-24 17:49:23 +02:00
Ricardo Wurmus
7f151c9bd8
gnu: diffoscope: Update to 188. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 188.
 2021-10-24 15:09:31 +00:00
Ricardo Wurmus
b142611b36
gnu: diffoscope: Disable another broken libfile test. 
* gnu/packages/diffoscope.scm (diffoscope)[arguments]: Rename build phase
'remove-berkeley-test to 'remove-broken-file-type-detection-test and delete
another test that is broken due to our `file' package.
 2021-10-24 15:09:30 +00:00
Ricardo Wurmus
1d9cf387b3
gnu: python-magic: Update to 0.4.24. 
* gnu/packages/python-xyz.scm (python-magic): Update to 0.4.24.
 2021-10-24 15:09:18 +00:00
Guillaume Le Vaillant
83a7d42426
gnu: Move Common Lisp testing frameworks to lisp-check module. 
* gnu/packages/lisp-xyz.scm (sbcl-1am, cl-1am, ecl-1am, sbcl-check-it,
  cl-check-it, ecl-check-it, sbcl-checkl, cl-checkl, ecl-checkl,
  sbcl-cl-mock, cl-mock, ecl-cl-mock, sbcl-cl-quickcheck, cl-quickcheck,
  ecl-cl-quickcheck, sbcl-clunit, cl-clunit, ecl-clunit, sbcl-clunit2,
  cl-clunit2, ecl-clunit2, sbcl-eos, cl-eos, ecl-eos, sbcl-fiasco, cl-fiasco,
  ecl-fiasco, sbcl-fiveam, cl-fiveam, ecl-fiveam, sbcl-hu.dwim.stefil,
  cl-hu.dwim.stefil, ecl-hu.dwim.stefil, sbcl-lift, cl-lift, ecl-lift,
  sbcl-lisp-unit, cl-lisp-unit, ecl-lisp-unit, sbcl-lisp-unit2,
  cl-lisp-unit2, ecl-lisp-unit2, sbcl-parachute, cl-parachute, ecl-parachute,
  sbcl-prove, cl-prove, ecl-prove, sbcl-ptester, cl-ptester, ecl-ptester,
  sbcl-rove, cl-rove, ecl-rove, sbcl-rt, cl-rt, ecl-rt, sbcl-stefil,
  cl-stefil, ecl-stefil, sbcl-unit-test, cl-unit-test, ecl-unit-test,
  sbcl-xlunit, cl-xlunit, ecl-xlunit): Move to ...
* gnu/packages/lisp-check.scm: ... here.
* gnu/packages/web-browsers.scm: Import lisp-check module.
* gnu/packages/wm.scm: Import lisp-check module.
 2021-10-24 16:05:02 +02:00
Ricardo Wurmus
973b21aa6a
gnu: Add r-umi4cpackage. 
* gnu/packages/bioinformatics.scm (r-umi4cpackage): New variable.
 2021-10-24 13:45:46 +00:00
Ricardo Wurmus
b3ac826e18
gnu: blender: Use older TBB and update header variables. 
* gnu/packages/graphics.scm (blender)[inputs]: Replace tbb with tbb-2020.
[arguments]: Don't set CPATH; set C_INCLUDE_PATH and CPLUS_INCLUDE_PATH instead.
 2021-10-24 13:28:05 +00:00
Ricardo Wurmus
78ea1ce7d5
gnu: openvdb: Use older version of TBB. 
* gnu/packages/graphics.scm (openvdb)[inputs]: Replace tbb with tbb-2020.
 2021-10-24 13:28:05 +00:00
Ricardo Wurmus
42873c2b06
gnu: tbb-for-salmon: Rename. 
* gnu/packages/tbb.scm (tbb-for-salmon): Rename this variable...
(tbb-2020): ...to this.
* gnu/packages/bioinformatics.scm (salmon)[inputs]: Rename it.
 2021-10-24 13:28:05 +00:00
Morgan Smith
49d19b35ce
gnu: emacs: Handle pdump filenames that contain a fingerprint. 
* gnu/packages/emacs.scm (emacs) [restore-emacs-pdmp]: Use lax regular
expressions to match files by the “.pdmp” file ending only.  Adjust comment
accordingly.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2021-10-24 10:49:45 +02:00
Efraim Flashner
9c3b2cf0b3
gnu: Add julia-infinity. 
* gnu/packages/julia-xyz.scm (julia-infinity): New variable.
 2021-10-24 11:41:20 +03:00
Efraim Flashner
caaf3a7bc6
gnu: Add julia-geometrybasics. 
* gnu/packages/julia-xyz.scm (julia-geometrybasics): New variable.
 2021-10-24 11:41:20 +03:00
Efraim Flashner
49996b2763
gnu: Add julia-gr. 
* gnu/packages/julia-xyz.scm (julia-gr): New variable.
 2021-10-24 11:41:20 +03:00
Efraim Flashner
6f3a9d4c9b
gnu: Add julia-gr-jll. 
* gnu/packages/julia-jll.scm (julia-gr-jll): New variable.
 2021-10-24 11:41:20 +03:00
Tobias Geerinckx-Rice
b111497f81
gnu: s6-linux-utils: Update to 2.5.1.6. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.6.
 2021-10-24 00:12:07 +02:00
Tobias Geerinckx-Rice
c78b914ee2
gnu: s6-linux-init: Update to 1.0.6.4. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.6.4.
 2021-10-24 00:12:07 +02:00
Tobias Geerinckx-Rice
5ff655e2ee
gnu: s6-portable-utils: Update to 2.2.3.3. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.3.3.
 2021-10-24 00:12:07 +02:00
Tobias Geerinckx-Rice
155a36ac76
gnu: s6-rc: Update to 0.5.2.3. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.2.3.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
9aa11db1cf
gnu: s6-networking: Update to 2.5.0.0. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.5.0.0.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
6ef806ffde
gnu: s6-dns: Update to 2.3.5.2. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.5.2.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
577e348c0b
gnu: s6: Update to 2.11.0.0. 
* gnu/packages/skarnet.scm (s6): Update to 2.11.0.0.
[arguments]: Don't explicitly return #t from phases.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
9ed3ee95bd
gnu: execline: Update to 2.8.1.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.8.1.0.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
35a5650426
gnu: skalibs: Update to 2.11.0.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.11.0.0.
[arguments]: Don't explicitly return #t from phases.
 2021-10-24 00:12:06 +02:00
Tobias Geerinckx-Rice
103eb25b12
gnu: dstask: Update to 0.25. 
* gnu/packages/task-management.scm (dstask): Update to 0.25.
[arguments]: Don't explicitly return #t from phases.
 2021-10-23 23:55:53 +02:00
Tobias Geerinckx-Rice
075c9f1269
gnu: asciinema: Remove ncurses reference. 
An external ‘tput’ is only required by ancient (<3.3) Pythons 3 and can
always be provided in $PATH.  It is not worth a reference.

* gnu/packages/terminals.scm (asciinema)[arguments]:
Remove 'patch-exec-paths phase.
[inputs]: Remove ncurses.
 2021-10-23 23:40:30 +02:00
Tobias Geerinckx-Rice
82924c1953
gnu: asciinema: Update to 2.1.0. 
* gnu/packages/terminals.scm (asciinema): Update to 2.1.0.
[arguments]: Don't explicitly return #t from phases.
 2021-10-23 23:33:08 +02:00
Tobias Geerinckx-Rice
6b0b6bb4a2
gnu: goaccess: Update to 1.5.2. 
* gnu/packages/web.scm (goaccess): Update to 1.5.2.
[arguments]: Don't explicitly return #t from phases.
 2021-10-23 23:19:58 +02:00
Ludovic Courtès
22e753b9b1
gnu: hdf-java: Look for jars in the right place. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Look for slf4j .jar
files in the right place rather than share/java.
 2021-10-23 23:19:02 +02:00
Ludovic Courtès
2dffe4767c
gnu: Use 'search-input-file' some more. 
This patch replaces occurrences of:

  (string-append (assoc-ref %build-inputs "…") "/…")

by:

  (search-input-file %build-inputs "/…")

* doc/guix.texi (Miscellaneous Services): Use 'search-input-file' in R
Shiny example.
* gnu/packages/admin.scm (screenfetch): Use 'search-input-file'.
(ufetch): Likewise.
(hosts): Likewise.
* gnu/packages/backup.scm (dirvish): Likewise.
* gnu/packages/code.scm (colormake): Likewise.
* gnu/packages/compression.scm (makeself-safeextract): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/education.scm (snap): Likewise.
(omnitux): Likewise.
* gnu/packages/emacs-xyz.scm (epipe): Likewise.
* gnu/packages/games.scm (openttd-opensfx): Likewise.
(openttd-openmsx): Likewise.
(openrct2-title-sequences):  Likewise.
(openrct2-objects):  Likewise.
(mrrescue):  Likewise.
(0ad-data):  Likewise.
(xonotic-data):  Likewise.
(drascula):  Likewise.
(make-lure-package):  Likewise.
(make-queen-package):  Likewise.
(sky):  Likewise.
* gnu/packages/gnome.scm (network-manager): Likewise.
* gnu/packages/gnuzilla.scm (icedove): Likewise.
* gnu/packages/guile-xyz.scm (guile-shapefile): Likewise.
* gnu/packages/hurd.scm (netdde): Likewise.
* gnu/packages/javascript.scm (js-context-menu): Likewise.
(js-commander): Likewise.
(js-xmldom-sre): Likewise.
* gnu/packages/kde-frameworks.scm (krunner): Likewise.
* gnu/packages/kodi.scm (kodi-cli): Likewise.
* gnu/packages/libreoffice.scm (hunspell-dict-pl): Likewise.
* gnu/packages/linux.scm (e2fsck/static): Likewise.
* gnu/packages/markup.scm (markdown): Likewise.
* gnu/packages/maths.scm (hdf-java): Likewise.
* gnu/packages/multiprecision.scm (libtomcrypt): Likewise.
* gnu/packages/networking.scm (batctl): Likewise.
* gnu/packages/python-xyz.scm (python-pymediainfo): Likewise.
* gnu/packages/shells.scm (fish-foreign-env): Likewise.
* gnu/packages/tex.scm (texlive-fonts-iwona): Likewise.
* gnu/packages/upnp.scm (miniupnpc): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-rclone): Likewise.
* gnu/packages/virtualization.scm (qemu): Likewise.
* gnu/packages/web.scm (icedtea-web): Likewise.
* gnu/packages/wm.scm (stumpish): Likewise.
 2021-10-23 23:05:21 +02:00
Vinicius Monego
c52ba63c67
gnu: Add OpenEXR 3. 
* gnu/packages/graphics.scm (openexr): New variable.
(openexr-2)[home-page]: Use home-page from openexr.
[synopsis]: Use synopsis from openexr.
[description]: Use description from openexr.
[license]: Use license from openexr.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-10-23 16:25:07 -04:00
Vinicius Monego
d71336b2e3
gnu: Rename openexr to openexr-2. 
This is done so the OpenEXR package can be upgraded to version 3 in a
later commit.

* gnu/packages/graphics.scm (openexr): Rename to ...
(openexr-2): ... new variable.
(blender, blender-2.79, openimageio, povray)[inputs]: Adjust accordingly.
(ctl)[propagated-inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[propagated-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Likewise.
* gnu/packages/image-processing.scm (mia, opencolorio, opencv, vips, gmic,
nip2)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (freeimage, vigra, devil)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kimageformats)[inputs]: Likewise.
* gnu/packages/kde.scm (krita)[inputs]: Likewise.
* gnu/packages/photo.scm (enblend-enfuse, darktable, hugin)[inputs]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-10-23 16:22:06 -04:00
Vinicius Monego
ae3fa855f3
gnu: Add imath. 
* gnu/packages/graphics.scm (imath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-10-23 16:22:06 -04:00
Konrad Hinsen
38db6e10f0
gnu: font-juliamono: Update to 0.043. 
* gnu/packages/fonts.scm (font-juliamono): Update to 0.043.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-10-23 15:53:55 -04:00
Michael Ford
09b8fcc0b7
gnu: bitcoin-core@0.21: Update to 0.21.2 
Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-10-23 15:53:46 -04:00
Tobias Geerinckx-Rice
5df03003e6
gnu: bcachefs-tools-static: Fix build. 
This follows up on commit 196e3f5235:
bcachefs-tools now unconditionally builds and installs libbcachefs.so.

* gnu/packages/file-systems.scm (bcachefs-tools-static)[arguments]:
Add a new 'skip-shared-library phase.
 2021-10-23 16:49:36 +02:00
Guillaume Le Vaillant
1f5e6ff648
gnu: sdr++: Activate M17 support. 
* gnu/packages/radio.scm (sdr++)[inputs]: Add codec2.
  [arguments]: Add "-DOPT_BUILD_M17_DECODER=ON" to 'configure-flags'.
 2021-10-23 15:01:56 +02:00
Tobias Geerinckx-Rice
7635279100
gnu: xen: Fix upstream hash mismatch. 
* gnu/packages/virtualization.scm (xen)[native-inputs]: Fetch mini-os by
Git its commit rather than an unstable tag.
 2021-10-23 14:03:37 +02:00
Tobias Geerinckx-Rice
fa6b5f5043
gnu: xen: Fetch Git sources over HTTPS. 
* gnu/packages/virtualization.scm (xen)[source, native-inputs]:
Clone the xen and mini-os repositories over HTTPS.
 2021-10-23 14:03:36 +02:00
Tobias Geerinckx-Rice
7628430a2f
gnu: php: Update to 7.4.25 [security fixes]. 
* gnu/packages/php.scm (php): Update to 7.4.25.
[source]: Don't explicitly return #t from snippet.
 2021-10-23 13:25:01 +02:00
Tobias Geerinckx-Rice
196e3f5235
gnu: bcachefs-tools: Update to 0.1-12.f9f5778. 
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-12.f9f5778.
 2021-10-23 13:24:43 +02:00
Tobias Geerinckx-Rice
cea62941f0
gnu: fontmanager: Update to 0.8.7. 
* gnu/packages/fontutils.scm (fontmanager): Update to 0.8.7.
 2021-10-23 13:24:43 +02:00
Tobias Geerinckx-Rice
b7e3f85e11
gnu: exiv2: Delete static library. 
* gnu/packages/image.scm (exiv2)[arguments]:
Add a 'delete-static-libraries phase.
 2021-10-23 13:24:43 +02:00
Tobias Geerinckx-Rice
f03fa7f9b0
gnu: exiv2: Update to 0.27.5. 
* gnu/packages/image.scm (exiv2): Update to 0.27.5.
 2021-10-23 13:24:43 +02:00
Nicolas Goaziou
cc6f0354e2
gnu: emacs-alect-themes: Update to 0.10. 
* gnu/packages/emacs-xyz.scm (emacs-alect-themes): Update to 0.10.
 2021-10-23 11:39:00 +02:00
Ricardo Wurmus
4a0cd6297a
gnu: Add qtltools. 
* gnu/packages/bioinformatics.scm (qtltools): New variable.
 2021-10-22 21:29:25 +00:00