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Author SHA1 Message Date
Andreas Enge
9d22c0ca39
gnu: pari-gp: Update to 2.13.1. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.1.
 2021-02-12 12:13:10 +01:00
Leo Prikler
fb3b4ffbb7
gnu: Fix indentation in OpenJDK packages. 
* gnu/packages/java.scm (openjdk9, openjdk10, openjdk11, openjdk12)
(openjdk13, openjdk14): Untabify and indent with Emacs.
 2021-02-12 11:40:10 +01:00
Björn Höfling
44425e1f2a
gnu: openjdk@11: Add phase to hardcode libraries. 
This fixes a NullPointerException related to using fontconfig,
see also <https://bugs.gnu.org/41177>.

* gnu/packages/java.scm (openjdk11)[arguments]: Add patch-jni-libs phase.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-02-12 11:40:10 +01:00
Björn Höfling
84805ef205
gnu: openjdk@9 : Add phase to hardcode libraries. 
This fixes a NullPointerException related to using fontconfig,
see also <https://bugs.gnu.org/41177>.

* gnu/packages/java.scm (openjdk9)[arguments]: Add patch-jni-libs phase.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-02-12 11:40:07 +01:00
宋文武
b72444a4cc
doc: Fix for 'guix pull'. 
Fixes a regression introduced in db6b9d2f4b.

* doc/guix.texi (File-Sharing Services): Remove space after '@pxref'.
 2021-02-12 17:31:47 +08:00
宋文武
15903eaab6
gnu: bpytop: Don't propagated python-psutil. 
* gnu/packages/admin.scm (bpytop): Move python-psutil to propagated-inputs.
 2021-02-12 17:09:00 +08:00
Zheng Junjie
c84698ef95
gnu: Add xkeysnail. 
* gnu/packages/xdisorg.scm (xkeysnail): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-12 17:08:02 +08:00
Zheng Junjie
18e79929f1
gnu: Add bpytop. 
* gnu/packages/admin.scm (bpytop): New variable.
 2021-02-12 16:58:02 +08:00
宋文武
4e96ce4294
gnu: dwl: Fix command name in description. 
* gnu/packages/wm.scm (dwl)[description]: Fix typo.
 2021-02-12 15:36:40 +08:00
Zheng Junjie
c5f5b356da
gnu: Add dwl. 
* gnu/packages/wm.scm (dwl): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-12 15:34:38 +08:00
Stefan Reichör
8cd181e4d8
gnu: pianobar: Update to 2020.11.28. 
* gnu/packages/music.scm (pianobar): Update to 2020.11.28.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-12 15:24:28 +08:00
Simon South
db6b9d2f4b
services: Add transmission-daemon service. 
* gnu/services/file-sharing.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* po/packages/POTFILES.in: Add it.
* tests/services/file-sharing.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* doc/guix.texi (File-Sharing Services): New section.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-12 15:11:36 +08:00
raid5atemyhomework
8458d8db70
gnu: zfs: Update to 2.0.3. 
* gnu/packages/file-systems.scm (zfs): Update to 2.0.3.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2021-02-12 13:56:38 +08:00
Vagrant Cascadian
f813750a4a
gnu: diffoscope: Update to 166. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 166.
  [source]: Add patch to use magic.open compatibility interface.
* gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file.
* gnu/local.mk [dist_patch_DATA]: New patch.
 2021-02-11 18:57:38 -08:00
Julien Lepiller
6bf136c890
gnu: opam: Update to 2.0.8. 
* gnu/packages/ocaml.scm (opam): Update to 2.0.8.
 2021-02-11 23:53:40 +01:00
Nicolas Goaziou
af0e5164b8
gnu: emacs-marginalia: Update to 0.3. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.3.
 2021-02-11 23:50:25 +01:00
Nicolas Goaziou
b101d9f651
gnu: emacs-consult: Update to 0.5. 
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.5.
 2021-02-11 23:48:31 +01:00
Mădălin Ionel Patrașcu
160e4a95e7
gnu: bowtie1: Update to 1.3.0. 
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
[arguments]: Set CC in make flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-02-11 22:29:37 +01:00
Leo Famulari
175bea0ca4
doc: Try to improve the branching workflow. 
* doc/contributing.texi (Submitting Patches): Introduce the use of "-frozen"
branch names.
 2021-02-11 16:13:39 -05:00
Ricardo Wurmus
0e3e26ca60
gnu: r-gage: Update to 2.40.1. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
5103da059a
gnu: r-msnbase: Update to 2.16.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
2596200514
gnu: r-methylkit: Update to 1.16.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
3f7e96acc7
gnu: r-delayedarray: Update to 0.16.1. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
9b66b8017d
gnu: r-biomart: Update to 2.46.3. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.3.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
8e25b1acf9
gnu: r-edger: Update to 3.32.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.1.
 2021-02-11 21:33:38 +01:00
Ricardo Wurmus
809f725977
gnu: r-iranges: Update to 2.24.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
88fd569ddf
gnu: r-s4vectors: Update to 0.28.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
babb2dce34
gnu: r-systempiper: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.3.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
d3ac91dd9d
gnu: r-gseabase: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
074d142ab6
gnu: r-genefilter: Update to 1.72.1. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
311bb4bc3d
gnu: r-delayedmatrixstats: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
8acfd9f3d4
gnu: r-sparsematrixstats: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
de4fc49270
gnu: r-scran: Update to 1.18.5. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
cf3e703820
gnu: r-scuttle: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
79d51ffeca
gnu: r-beachmat: Update to 2.6.4. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
a1357422c3
gnu: r-rhdf5lib: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
f7947f8991
gnu: r-hdf5array: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
18ebacaa1c
gnu: r-preprocesscore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
da109ae738
gnu: r-chemminer: Update to 3.42.1. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
 2021-02-11 21:33:37 +01:00
Ricardo Wurmus
6f37c3ea40
gnu: r-gdsfmt: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
9470f901d9
gnu: r-cytolib: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
691178d67b
gnu: r-multidataset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
6d0709231f
gnu: r-clusterprofiler: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
ebf9ad7984
gnu: r-enrichplot: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
669ea5ab09
gnu: r-matrixgenerics: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
 2021-02-11 21:33:36 +01:00
Ricardo Wurmus
61609fb88e
gnu: r-diffbind: Update to 3.0.13. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
 2021-02-11 21:33:36 +01:00
Leo Famulari
a18492118c
gnu: OpenLDAP: Update to 2.4.57 [security fixes]. 
Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}.

* gnu/packages/openldap.scm (openldap-2.4.57): New variable.
(openldap)[replacement]: New field.
 2021-02-11 15:02:53 -05:00
Nicolas Goaziou
7f891056d4
gnu: Add wob. 
* gnu/packages/xdisorg.scm (wob): New variable.
 2021-02-11 20:54:04 +01:00
Nicolas Goaziou
cf95ef7f44
gnu: Add gammastep. 
* gnu/packages/xdisorg.scm (gammastep): New variable.
 2021-02-11 20:50:39 +01:00
Julien Lepiller
c5dc87fee8
gnu: Add font-cozette. 
* gnu/packages/fonts.scm (font-cozette): New variable.
 2021-02-11 17:51:50 +01:00