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Author SHA1 Message Date
Maxim Cournoyer
cc9b889e8f
linux-boot: Ensure volatile root is mounted read-only. 
* gnu/build/linux-boot.scm (mount-root-file-system): Ensure MS_RDONLY is
present among the root file system flags when VOLATILE-ROOT? is #t.
 2020-03-02 23:24:47 -05:00
Tobias Geerinckx-Rice
754c12041d
gnu: mu: Use HTTPS home page. 
* gnu/packages/mail.scm (mu)[home-page]: Use HTTPS.
 2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice
9f733172cb
gnu: yadifa: Use HTTPS home page. 
* gnu/packages/dns.scm (yadifa)[home-page]: Use HTTPS.
 2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice
1084e86b59
gnu: python2-py2neo: Use HTTPS home page. 
* gnu/packages/databases.scm (python2-py2neo)[home-page]: Use HTTPS.
 2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice
a0fdade220
gnu: python-contextlib2: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-contextlib2)[home-page]: Use HTTPS.
 2020-03-03 05:06:48 +01:00
Tobias Geerinckx-Rice
02510c6c9a
gnu: python-flask-principal: Update home page. 
* gnu/packages/python-web.scm (python-flask-principal)[home-page]:
Follow (HTTPS) redirection.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
fd3ae040cf
gnu: python-gipc: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-gipc)[home-page]: Use HTTPS.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
d3d73bd650
gnu: python-seaborn: Update & use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-seaborn)[home-page]: Follow
redirection, but use HTTPS.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
5d6e7106e1
gnu: python-vobject: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-vobject)[home-page]: Use HTTPS.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
26827dfe36
gnu: python-activepapers: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-activepapers)[home-page]:
Use HTTPS.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
f894ffd867
gnu: tome4: Update to 1.6.7. 
* gnu/packages/games.scm (tome4): Update to 1.6.7.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
bcea20cc90
gnu: shotwell: Update to 0.30.8. 
* gnu/packages/gnome.scm (shotwell): Update to 0.30.8.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
5decb16015
gnu: gmime: Update to 3.2.6. 
* gnu/packages/mail.scm (gmime): Update to 3.2.6.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
363fe78af1
gnu: liblo: Update to 0.31. 
* gnu/packages/audio.scm (liblo): Update to 0.31.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
46b39ce835
gnu: fish: Don't use NAME in source URI. 
* gnu/packages/shells.scm (fish)[source]: Hard-code NAME.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
848be51c88
gnu: gptfdisk: Update to 1.0.5. 
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.5.
[source]: Hard-code NAME.
[arguments]: Add ‘fix-include-directory’ phase.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
0e08ca1454
gnu: amtk: Update to 5.0.2. 
* gnu/packages/gnome.scm (amtk): Update to 5.0.2.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
e82cf6c687
gnu: notmuch: Extend test time-out. 
* gnu/packages/mail.scm (notmuch)[arguments]:
Add NOTMUCH_TEST_TIMEOUT=1h make flag.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
5815531202
gnu: oil-shell: Update to 0.7.0. 
* gnu/packages/shells.scm (oil-shell): Update to 0.7.0.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
efebdf3a66
gnu: serd: Update to 0.30.2. 
* gnu/packages/rdf.scm (serd): Update to 0.30.2.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice
78fca23163
gnu: python-pyudev: Update to 0.22.0. 
* gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.
 2020-03-03 05:05:47 +01:00
Leo Famulari
6ce0865500
gnu: Go: Update to 1.13.8. 
* gnu/packages/golang.scm (go-1.13): Update to 1.13.8.
 2020-03-02 19:30:26 -05:00
Marius Bakke
15a6805751
gnu: Add system test for CUPS. 
* gnu/tests/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2020-03-02 23:39:44 +01:00
Marius Bakke
1f8838d1f6
gnu: libgc: Fix replacement inheritance. 
* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.
 2020-03-02 23:39:44 +01:00
Ricardo Wurmus
1e07875b57
gnu: Add r-zseq. 
* gnu/packages/cran.scm (r-zseq): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus
02366a12d0
gnu: Add r-ztype. 
* gnu/packages/cran.scm (r-ztype): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus
11ab52888d
gnu: Add r-zvcv. 
* gnu/packages/cran.scm (r-zvcv): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus
505d6716d0
gnu: Add r-zyp. 
* gnu/packages/cran.scm (r-zyp): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus
7316f137dc
gnu: Add r-kendall. 
* gnu/packages/cran.scm (r-kendall): New variable.
 2020-03-02 23:05:49 +01:00
Maxim Cournoyer
1639e0b7b6
gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2. 
* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer
166dbbb012
gnu: python-gitpython: Update to 3.1.0. 
* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer
cbe4272e6f
gnu: python-gitdb: Update to 4.0.2. 
* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror.  This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer
357af7f283
gnu: python-pyyaml: Update to 5.3. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer
8c06d6d8ce
gnu: python-xenon: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer
f675ab4faf
gnu: python-radon: Update to 4.1.0. 
* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer
bd13705540
gnu: python-colorama: Update to 0.4.3. 
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer
9c9704a9d7
gnu: Add python-wget. 
* gnu/packages/python-xyz.scm (python-wget): New variable.
 2020-03-02 17:03:02 -05:00
Nicolas Goaziou
1eee899617
gnu: emacs-windower: Fix description. 
* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.
 2020-03-02 22:59:57 +01:00
Ricardo Wurmus
7a4b2da48f
gnu: r-forcats: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
 2020-03-02 21:53:49 +01:00
Ricardo Wurmus
3f809fe875
gnu: r-testthat: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus
d82a17ebaa
gnu: r-openmx: Update to 2.17.3. 
* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus
2d063d4535
gnu: r-summarytools: Update to 0.9.6. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus
bbba65e269
gnu: r-officer: Update to 0.3.7. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus
1284df4ef6
gnu: r-seqminer: Update to 8.0. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
 2020-03-02 21:53:48 +01:00
Tobias Geerinckx-Rice
b4034d1bc4
gnu: ecl-clunit: Use HTTPS home page. 
* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
711ebe771e
gnu: mapnik: Use HTTPS home page. 
* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
4e5ad79e4d
gnu: python-rq: Use HTTPS home page. 
* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
35e74723b5
gnu: java-plexus-interpolation: Use HTTPS home page. 
* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
c99f0e5780
gnu: amsynth: Use HTTPS home page. 
* gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
a369682826
gnu: pootle: Use HTTPS home page. 
* gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
9bbb492042
gnu: muse-sequencer: Update home page. 
* gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS)
redirection.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
ba6b48b84f
gnu: opensmtpd: Support ECDSA certificates. 
The required libressl version is now stable and more featureful than
openssl.

* gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
0250672b97
gnu: libressl: Update to 3.0.2. 
* gnu/packages/tls.scm (libressl): Update to 3.0.2.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice
b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
 2020-03-02 21:46:27 +01:00
Nicolas Goaziou
45a2636a0b
gnu: emacs-modus-themes: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.
 2020-03-02 21:37:15 +01:00
Leo Famulari
8e1f5aaba2
gnu: Syncthing: Fix installation of the 'util' package output. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.
 2020-03-02 15:36:21 -05:00
Efraim Flashner
7b1ba1e4fc
gnu: librsvg-next: Fix cargo dependency. 
* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.
 2020-03-02 22:11:16 +02:00
Efraim Flashner
597f41ca49
gnu: rust-diff-0.1: Update to 0.1.12. 
* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.
 2020-03-02 22:09:04 +02:00
Efraim Flashner
4b309aad04
gnu: rust-defmac-0.2: Don't skip build. 
* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.
 2020-03-02 21:58:22 +02:00
Efraim Flashner
64a28fd6e1
gnu: rust-datetime-0.4: Don't skip build. 
* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.
 2020-03-02 21:56:54 +02:00
Efraim Flashner
49877d9fd6
gnu: rust-constant-time-eq-0.1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.
 2020-03-02 21:48:02 +02:00
Vincent Legoll
bdcec7028c
gnu: debootstrap: Update to 1.0.119. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-03-02 21:33:28 +02:00
Efraim Flashner
c1febbbf94
gnu: vim: Update to 8.2.0343. 
* gnu/packages/vim.scm (vim): Update to 8.2.0343.
 2020-03-02 10:40:34 +02:00
Ricardo Wurmus
5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
 2020-03-01 23:38:33 +01:00
Ricardo Wurmus
e766ba9a52
gnu: r-cicero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
 2020-03-01 23:38:26 +01:00
Ricardo Wurmus
0a30342def
gnu: r-mlinterfaces: Update to 1.66.4. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
 2020-03-01 23:38:19 +01:00
Ricardo Wurmus
aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
 2020-03-01 23:38:12 +01:00
Ricardo Wurmus
8351faae8a
gnu: r-chippeakanno: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
 2020-03-01 23:38:06 +01:00
Ricardo Wurmus
f73b75e00c
gnu: r-hdf5array: Update to 1.14.3. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
 2020-03-01 23:37:58 +01:00
Ricardo Wurmus
6c1f5a1b7e
gnu: r-rsamtools: Update to 2.2.3. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
 2020-03-01 23:37:52 +01:00
Ricardo Wurmus
9bbf3f9de2
gnu: r-edger: Update to 3.28.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
 2020-03-01 23:37:40 +01:00
Ricardo Wurmus
efb98dd09d
gnu: gwl: Update to 0.2.1. 
* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
42c7f6e748
gnu: r-nloptr: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
b3be560e23
gnu: r-gplots: Update to 3.0.3. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
8bcbb67c17
gnu: r-mvtnorm: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
2589dc4b50
gnu: r-rlang: Update to 0.4.5. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
fb93e2f539
gnu: r-digest: Update to 0.6.25. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
51d36a12b7
gnu: r-nnet: Update to 7.3-13. 
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
 2020-03-01 23:21:18 +01:00
Ricardo Wurmus
e3eb7ee474
gnu: r-seurat: Update to 3.1.4. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
339fa00a98
gnu: r-wgcna: Update to 1.69. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
78acab4818
gnu: r-quanteda: Update to 2.0.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
2fc3575608
gnu: r-gdina: Update to 2.7.9. 
* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
0c51197b3c
gnu: r-subplex: Update to 1.6. 
* gnu/packages/cran.scm (r-subplex): Update to 1.6.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
ecbae383d8
gnu: r-rpf: Update to 1.0.3. 
* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
2a216f5a5f
gnu: r-dalex: Update to 1.0.1. 
* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
79f7e127ea
gnu: r-styler: Update to 1.3.2. 
* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
cd4a4eafcc
gnu: r-gridgraphics: Update to 0.5-0. 
* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
851e576213
gnu: r-protviz: Update to 0.6.3. 
* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
5144de4b1d
gnu: r-rvcheck: Update to 0.1.8. 
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
d41528b093
gnu: r-rcppannoy: Update to 0.0.15. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
 2020-03-01 23:21:17 +01:00
Ricardo Wurmus
19b0b54ed1
gnu: r-mvabund: Update to 4.1.3. 
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
a0077446a1
gnu: r-manipulatewidget: Update to 0.10.1. 
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
0fab5a4769
gnu: r-effectsize: Update to 0.2.0. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
1bd8563322
gnu: r-factominer: Update to 2.3. 
* gnu/packages/cran.scm (r-factominer): Update to 2.3.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
a670564929
gnu: r-tinytex: Update to 0.20. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
f7dc4f7bfd
gnu: r-uuid: Update to 0.1-4. 
* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
d67f83072c
gnu: r-broom: Update to 0.5.5. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
353b3515a6
gnu: r-cli: Update to 2.0.2. 
* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
8a9d551c8d
gnu: r-sp: Update to 1.4-1. 
* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
9e3a089b44
gnu: r-dendextend: Update to 1.13.4. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
 2020-03-01 23:21:16 +01:00
Ricardo Wurmus
dfa052726a
gnu: r-modelr: Update to 0.1.6. 
* gnu/packages/cran.scm (r-modelr): Update to 0.1.6.
[propagated-inputs]: Add r-tidyselect.
 2020-03-01 23:21:15 +01:00
Ricardo Wurmus
ade9158b62
gnu: r-matrix-utils: Update to 0.9.8. 
* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
 2020-03-01 23:21:15 +01:00
Ricardo Wurmus
975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
 2020-03-01 23:21:15 +01:00
Nicolas Goaziou
d4388c0bf6
gnu: emacs-relint: Update to 1.14. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.14.
 2020-03-01 22:55:41 +01:00
Nicolas Goaziou
55db5a50e2
gnu: emacs-xr: Update to 1.16. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.16.
 2020-03-01 22:54:46 +01:00
Jan Nieuwenhuizen
2d79250d1a
gnu: qemu-minimal-2.10: Use minimal dependencies from qemu-minimal. 
Without this patch qemu-minimal-2.10 is not really minimal; it depends on
cups, ffmpeg, ghostscript, gstreamer, gtk, spice, ...

* gnu/packages/virtualization.scm (qemu-minimal-2.10)
  [native-inputs]: Inherit from QEMU-MINIMAL instead of QEMU.
  [inputs]: Likewise.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-01 21:51:53 +01:00
Christopher Baines
cfe3581426
gnu: guile-squee: Fix the "guile3.0-squee" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-squee): Switch inputs to native-inputs.
 2020-03-01 20:50:33 +00:00
Christopher Baines
63a847cb11
gnu: guile-email: Add "guile3.0-email" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-email): New variable.
 2020-03-01 20:10:21 +00:00
Christopher Baines
945a73d82d
gnu: guile-squee: Add "guile3.0-squee" variant. 
* gnu/packages/guile-xyz.scm (guile3.0-squee): New variable.
 2020-03-01 20:10:21 +00:00
Tobias Geerinckx-Rice
aabc895402
gnu: python-construct: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-construct)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
d3eae3f1ec
gnu: warzone2100: Use HTTPS home page. 
* gnu/packages/games.scm (warzone2100)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
555f3d15b1
gnu: python-sphinx: Use HTTPS home page. 
* gnu/packages/sphinx.scm (python-sphinx)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
f4eee79db2
gnu: libgc: Use HTTPS home page. 
* gnu/packages/bdw-gc.scm (libgc)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
5adaeb3618
gnu: python-pyalsaaudio: Use HTTPS home page. 
* gnu/packages/audio.scm (python-pyalsaaudio)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
41181b7696
gnu: ruby-markaby: Use HTTPS home page. 
* gnu/packages/ruby.scm (ruby-markaby)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
efc0a5878a
gnu: python-h5py: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-h5py)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
3a066fbe23
gnu: wordnet: Use HTTPS home page. 
* gnu/packages/wordnet.scm (wordnet)[home-page]: Use HTTPS.
 2020-03-01 20:47:54 +01:00
Tobias Geerinckx-Rice
c150d6378d
gnu: dehydrated: Install documentation. 
* gnu/packages/tls.scm (dehydrated)[arguments]: Install compressed man
page and other basic documentation.
 2020-03-01 20:47:54 +01:00
Nicolas Goaziou
c4f197d5e4
gnu: ode: Update to 0.16.1. 
* gnu/packages/game-development.scm (ode): Update to 0.16.1.
 2020-03-01 16:26:21 +01:00
Tobias Geerinckx-Rice
3dd74c8dc5
gnu: python-graphene: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-graphene)[home-page]: Use HTTPS.
 2020-03-01 14:41:38 +01:00
Tobias Geerinckx-Rice
203475e430
gnu: anthy: Use HTTPS home page. 
* gnu/packages/anthy.scm (anthy)[home-page]: Use HTTPS.
 2020-03-01 14:41:38 +01:00
Tobias Geerinckx-Rice
1b3a603837
gnu: java-commons-cli: Use HTTPS home page. 
* gnu/packages/java.scm (java-commons-cli)[home-page]: Use HTTPS.
 2020-03-01 14:41:38 +01:00
Tobias Geerinckx-Rice
1e30dff38b
gnu: lrcalc: Use HTTPS home page. 
* gnu/packages/algebra.scm (lrcalc)[home-page]: Use HTTPS.
 2020-03-01 14:41:38 +01:00
Tobias Geerinckx-Rice
21e207d285
gnu: java-commons-collections4: Use HTTPS home page. 
* gnu/packages/java.scm (java-commons-collections4)[home-page]: Use HTTPS.
 2020-03-01 14:41:38 +01:00
Damien Cassou
87eeeeb04a
gnu: mozjs@17, mozjs@24: Fix build. 
* gnu/packages/gnuzilla.scm (mozjs): Add ‘-fpermissive’ to CXXFLAGS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-01 14:41:38 +01:00
Tobias Geerinckx-Rice
bb5ab9bfab
gnu: dehydrated: Update source URI. 
* gnu/packages/tls.scm (dehydrated)[source]: Update URI.
 2020-03-01 14:41:37 +01:00
Ricardo Wurmus
77cf666b00
gnu: cogserver: Update to 0-2.ec5f3b9. 
* gnu/packages/opencog.scm (cogserver): Update to 0-2.ec5f3b9.
[arguments]: Enable tests.
 2020-03-01 14:21:54 +01:00
Jakub Kądziołka
50be0da7bf
services: set-xorg-configuration: handle slim and sddm 
* gnu/services/xorg.scm (handle-xorg-configuration): New syntax.
  (gdm-service-type, slim-service-type): Use handle-xorg-configuration.
* gnu/services/sddm.scm (sddm-service-type): Likewise.
 2020-03-01 14:13:27 +01:00
Jakub Kądziołka
9b9ab657cc
gnu: python-binwalk: Switch to a release. 
When the package was last modified, the version wasn't released; an
unreleased commit was used. This is no longer necessary. The tag only
differs in the version number from the commit that was being used
before.

* gnu/packages/python-xyz.scm (python-binwalk): Use a released tag
  (v2.2.0).

Co-authored-by: Vincent Legoll <vincent.legoll@gmail.com>
 2020-03-01 14:09:56 +01:00
Danny Milosavljevic
2f3515f736
gnu: avr-gcc: Fix compiler lookup paths. 
* gnu/packages/avr.scm (avr-gcc-4.9): Use CROSS_C*_INCLUDE_PATH (like
cross-base does).
(avr-gcc-5)[source]: Apply patch "gcc-cross-environment-variables.patch".
 2020-03-01 12:52:43 +01:00
Nicolas Goaziou
dad3645b67
gnu: wireshark: Update to 3.2.2. 
* gnu/packages/networking.scm (wireshark): Update to 3.2.2.
 2020-03-01 11:18:36 +01:00
Nicolas Goaziou
4a5e7edce2
gnu: fet: Update to 5.43.2. 
* gnu/packages/education.scm (fet): Update to 5.43.2.
 2020-03-01 11:11:47 +01:00
Nicolas Goaziou
a733253b5c
gnu: giac: Update to 1.5.0-87. 
* gnu/packages/algebra.scm (giac): Update to 1.5.0-87.
 2020-03-01 10:48:12 +01:00
Nicolas Goaziou
bc490e070a
gnu: mame: Update to 0.219. 
* gnu/packages/emulators.scm (mame): Update to 0.219.
 2020-03-01 09:51:40 +01:00
Efraim Flashner
1d9b4664e3
gnu: rust-bitflags-1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-bitflags-1)[arguments]: Don't skip
build.
(rust-bitflags-0.8, rust-bitflags-0.7)[arguments]: Same.
 2020-03-01 10:40:05 +02:00
Efraim Flashner
c9f32328d4
gnu: rust-bencher-0.1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-bencher-0.1)[arguments]: Don't skip
build.
 2020-03-01 10:37:35 +02:00
Efraim Flashner
23e71f5d34
gnu: rust-antidote-1.0: Don't skip build. 
* gnu/packages/crates-io.scm (rust-antidote-1.0)[arguments]: Don't skip
build.
 2020-03-01 10:35:40 +02:00
Efraim Flashner
0b3848f00e
gnu: rust-winapi-build-0.1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-winapi-build-0.1)[arguments]: Don't
skip build.
 2020-03-01 10:34:43 +02:00
Efraim Flashner
3201503d3c
gnu: rust-string-cache-0.7: Upgrade to 0.7.5. 
* gnu/packages/crates-io.scm (rust-string-cache-0.7): Upgrade to 0.7.5.
[arguments]: Don't skip build.
 2020-03-01 10:29:41 +02:00
Efraim Flashner
c9f97083f0
gnu: rust-string-cache-shared-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-string-cache-shared-0.3)[arguments]:
Don't skip build.
 2020-03-01 10:24:11 +02:00
Efraim Flashner
bb5bc8270e
gnu: rust-string-cache-codegen-0.4: Upgrade to 0.4.4. 
* gnu/packages/crates-io.scm (rust-string-cache-codegen-0.4): Upgrade to 0.4.4.
[arguments]: Don't skip build. Replace rust-proc-macro2-0.4 with 1.0 in
cargo-inputs.
 2020-03-01 10:18:55 +02:00
Efraim Flashner
ddba2afe53
gnu: rust-synstructure-0.10: Don't skip build. 
* gnu/packages/crates-io.scm (rust-synstructure-0.10)[arguments]: Don't
skip build. Replace rust-quote-1.0 with 0.6 in cargo-inputs.
 2020-03-01 10:11:42 +02:00
Efraim Flashner
eb5eb9bb8d
gnu: crates-io.scm: Sort alphabetically. 
* gnu/packages/crates-io.scm: Sort packages alphabetically.
 2020-03-01 10:07:04 +02:00
Efraim Flashner
3fd8d20e56
gnu: rust-seahash-3.0: Upgrade to 3.0.7. 
* gnu/packages/crates-io.scm (rust-seahash-3.0): Upgrade to 3.0.7.
[arguments]: Don't skip build.
 2020-02-29 22:46:12 +02:00
Efraim Flashner
af4bf10c1a
gnu: rust-scroll-derive-0.9: Don't skip build. 
* gnu/packages/crates-io.scm (rust-scroll-derive-0.9)[arguments]: Don't
skip build. Replace rust-quote-1.0 with 0.6 in cargo-inputs.
 2020-02-29 22:46:11 +02:00
Efraim Flashner
b24510dcaa
gnu: rust-scroll-0.9: Fix inputs. 
* gnu/packages/crates-io.scm (rust-scroll-0.9)[arguments]: Move
rust-rustc-version-0.2 from cargo-development-inputs to cargo-inputs.
 2020-02-29 22:46:11 +02:00
Efraim Flashner
bc249a10eb
gnu: rust-html5ever-0.23: Don't skip build. 
* gnu/packages/crates-io.scm (rust-html5ever-0.23)[arguments]: Don't
skip build. Replace rust-quote-1.0 with 0.6. Move rust-proc-macro2-0.4,
rust-quote-0.6, rust-syn-0.15 from cargo-development-inputs to
cargo-inputs.
 2020-02-29 22:46:11 +02:00
Efraim Flashner
8758953924
gnu: rust-markup5ever-0.8: Don't skip build. 
* gnu/packages/crates-io.scm (rust-markup5ever-0.8)[arguments]: Don't
skip build. Move all crates in cargo-development-inputs to cargo-inputs
where build dependencies are located.
 2020-02-29 22:46:11 +02:00
Efraim Flashner
7fd3484686
gnu: rust-futures-select-macro-preview-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-futures-select-macro-preview-0.3)
[arguments]: Don't skip build. Replace rust-quote-1.0 with 0.6 in
cargo-inputs.
 2020-02-29 22:46:11 +02:00
Efraim Flashner
0e327e339b
gnu: rust-flamer-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-flamer-0.3)[arguments]: Don't skip
build. Skip tests. Replace rust-quote-1.0 with 0.6 in cargo-inputs.
 2020-02-29 22:46:10 +02:00