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Author SHA1 Message Date
Ricardo Wurmus
8bfc37f725
gnu: r-ape: Update to 5.6. 
* gnu/packages/cran.scm (r-ape): Update to 5.6.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
2f3eac29af
gnu: r-shadowtext: Update to 0.1.0. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.0.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
138ce13e44
gnu: r-ggpmisc: Update to 0.4.5. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.5.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
52a839ac52
gnu: r-ggpp: Update to 0.4.3. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.3.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
8e538e080c
gnu: r-v8: Update to 4.0.0. 
* gnu/packages/cran.scm (r-v8): Update to 4.0.0.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
0d1e96cec3
gnu: r-rticles: Update to 0.22. 
* gnu/packages/cran.scm (r-rticles): Update to 0.22.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
0e6fee9bc0
gnu: r-datawizard: Update to 0.2.2. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.2.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
9af1a9dd4a
gnu: r-brio: Update to 1.1.3. 
* gnu/packages/cran.scm (r-brio): Update to 1.1.3.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
38e4477a8b
gnu: r-httpuv: Update to 1.6.4. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.4.
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Adjust to version
1.6.4.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
3cb1548f91
gnu: Add r-densestbayes. 
* gnu/packages/cran.scm (r-densestbayes): New variable.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
9a89cee1b1
gnu: Add r-matrixextra. 
* gnu/packages/cran.scm (r-matrixextra): New variable.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
231e33d636
gnu: r-activedriverwgs: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
b615af830b
gnu: r-activedriverwgs: Update to 1.1.2. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2.
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38,
r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
734e1b185f
gnu: r-valr: Update to 0.6.4. 
* gnu/packages/cran.scm (r-valr): Move from here...
* gnu/packages/bioconductor.scm (r-valr): ...to here.  Update to 0.6.4.
[propagated-inputs]: Add r-rtracklayer.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
d4e0534c4f
gnu: r-openssl: Use openssl instead of libressl. 
* gnu/packages/statistics.scm (r-openssl)[arguments]: Add phase to disable
versioned linking.
[inputs]: Replace libressl with openssl.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
2d666bd6c0
gnu: r-openssl: Update to 1.4.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.6.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
e86afe58ff
guix/upstream: Let changed-inputs support the new input lists. 
* guix/upstream.scm (changed-inputs): Add match clauses for new-style input
lists.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
6226df77ee
tests: Add failing tests for changed-inputs on new style inputs. 
* tests/upstream.scm ("changed-inputs returns changes to plain input list",
"changed-inputs returns changes to all plain input lists"): New tests.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
a6bf1c108e
tests: Add tests for changed-inputs on old-style inputs. 
All these tests pass, because they only test the old-style input alists with
labels.

* tests/upstream.scm ("changed-inputs returns no changes",
"changed-inputs returns changes to labelled input list",
"changed-inputs returns changes to all labelled input lists"): New tests.
 2022-01-05 21:17:54 +01:00
Nicolas Goaziou
6a54715988
gnu: musescore: Use new package style. 
* gnu/packages/music.scm (musescore)[source]<snippet>: Remove trailing #T.
[inputs]: Remove labels.
 2022-01-05 14:32:12 +01:00
Nicolas Goaziou
7e651ab3e6
gnu: emacs-helm-cider: Update to 0.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-cider): Update to 0.5.0.
 2022-01-05 12:11:30 +01:00
Nicolas Goaziou
16a645b7a9
gnu: emacs-emms: Update to 8. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 8.
 2022-01-05 12:08:07 +01:00
Marius Bakke
9577a9bad9
gnu: python-django@2.2: Update hash. 
PyPI is serving a different tarball from the official home page, where this
packager had downloaded it: <https://code.djangoproject.com/ticket/33411>.
This is a follow-up to commit ad35d8c017.

* gnu/packages/django.scm (python-django-2.2)[source]: Update checksum.
 2022-01-05 11:43:20 +01:00
Marius Bakke
ad35d8c017
gnu: python-django@2.2: Update to 2.2.26 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-2.2): Update to 2.2.26.
 2022-01-05 11:20:00 +01:00
Marius Bakke
e19b9ad5a2
gnu: python-django@3.2: Update to 3.2.11 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-3.2): Update to 3.2.11.
 2022-01-05 11:20:00 +01:00
Marius Bakke
07b505aa3b
gnu: python-django: Update to 4.0.1 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-4.0): Update to 4.0.1.
 2022-01-05 11:20:00 +01:00
Marius Bakke
1b6973cc58
gnu: uBlock Origin: Update to 1.40.4. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.40.4.
 2022-01-05 11:20:00 +01:00
Marius Bakke
56b29a61e8
gnu: nmrpflash: Update to 0.9.16. 
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.16.
 2022-01-05 11:20:00 +01:00
Tobias Geerinckx-Rice
8860e9db56
gnu: lucene++: Use G-expressions. 
* gnu/packages/rdf.scm (lucene++)[arguments]:
Rewrite as G-expressions.
 2022-01-05 03:54:05 +01:00
Tobias Geerinckx-Rice
8e25b0f64a
gnu: lucene++: Update to 3.0.8. 
* gnu/packages/rdf.scm (lucene++): Update to 3.0.8.
[source]: Add a nice snippet.
[arguments]: Don't install the entire gtest suite.
Add a custom 'check phase.
[inputs]: Add zlib.
 2022-01-05 03:54:05 +01:00
Tobias Geerinckx-Rice
0e3fd2b64b
gnu: hangups: Update to 0.4.16. 
* gnu/packages/messaging.scm (hangups): Update to 0.4.16.
[propagated-inputs]: Upgrade python-protobuf-3.6 to python-protobuf.
 2022-01-05 03:54:05 +01:00
Tobias Geerinckx-Rice
0e96a71816
gnu: amsynth: Use G-expressions. 
* gnu/packages/music.scm (amsynth)[arguments]:
Rewrite as G-expressions.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
1cba8def9f
gnu: amsynth: Update to 1.12.3. 
* gnu/packages/music.scm (amsynth): Update to 1.12.3.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
de099ca5b9
gnu: moreutils: Use G-expressions. 
* gnu/packages/moreutils.scm (moreutils)[arguments]:
Rewrite as G-expressions.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
479a1f0db5
gnu: moreutils: Update to 0.67. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.67.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
4b784c6846
gnu: nbd: Update to 3.23. 
* gnu/packages/networking.scm (nbd): Update to 3.23.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
e662bdc489
gnu: itcl: Use G-expressions. 
* gnu/packages/tcl.scm (itcl)[arguments]:
Rewrite as G-expressions.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
0ae5e25419
gnu: itcl: Update to 4.2.2. 
* gnu/packages/tcl.scm (itcl): Update to 4.2.2.
 2022-01-05 03:54:04 +01:00
Tobias Geerinckx-Rice
14564f5847
gnu: linuxdcpp: Reanimate. 
* gnu/packages/direct-connect.scm (linuxdcpp)[source]: Add patch and
snippet to fix build.
* gnu/packages/patches/linuxdcpp-openssl-1.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-01-05 03:54:03 +01:00
Tobias Geerinckx-Rice
f7e6e93662
gnu: rinutils: Respect #:tests? 
* gnu/packages/games.scm (rinutils)[arguments]: Respect #:tests? in 'check.
 2022-01-05 03:54:03 +01:00
zimoun
8646f1f7a5
guix hash: Allow '--exclude-vcs' option using 'git' serializer. 
* guix/scripts/hash.scm (git-hash): Use '#:select?' with
'git-hash-directory'.
* tests/guix-hash.sh: Adjust accordingly.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
 2022-01-04 20:37:29 -05:00
Ricardo Wurmus
e675030fba
gnu: Add fcrackzip. 
* gnu/packages/compression.scm (fcrackzip): New variable.
 2022-01-05 00:21:26 +01:00
Nicolas Goaziou
4c812db049
gnu: emacs-goto-chg: Update to 1.7.4. 
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.4.
 2022-01-04 19:47:15 +01:00
Ricardo Wurmus
b9c5dff57f
gnu: Add r-varhandle. 
* gnu/packages/cran.scm (r-varhandle): New variable.
 2022-01-04 17:11:49 +01:00
Nicolas Goaziou
48c2983d95
gnu: snap: Update to 7.0.3. 
* gnu/packages/education.scm (snap): Update to 7.0.3.
 2022-01-04 16:53:56 +01:00
Ricardo Wurmus
603dd56be1
gnu: r-archr: Update to 1.0.1-1.92ab814. 
* gnu/packages/bioinformatics.scm (r-archr): Update to 1.0.1-1.92ab814.
 2022-01-04 16:08:03 +01:00
Nicolas Goaziou
b80b55e76d
gnu: asymptote: Update to 2.74. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.74.
[native-inputs]: Add autoconf, automake, boost, rapidjson, texlive-hyperref,
texlive-latex-media9, texlive-latex-ocgx2.
[inputs]: Add libtirpc.
[arguments]<#:configure-flags>: Use gexps.
<#:phases>: Fix more include statements.  Add phase to prevent
hard-coding tirpc include directory.  Also force boostrapping.  Remove
trailing #T.
 2022-01-04 16:05:40 +01:00
Mathieu Othacehe
9235dd136e
gnu: Add mbed-tools. 
* gnu/packages/embedded.scm (mbed-tools): New variable.
 2022-01-04 13:03:05 +01:00
Mathieu Othacehe
84207eea2c
gnu: Add python-pdoc3. 
* gnu/packages/patches/python-pdoc3-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/local.mk (python-pdoc3): New variable.
 2022-01-04 12:45:29 +01:00
Mathieu Othacehe
e62c35f506
gnu: stlink: Update the uri. 
* gnu/packages/embedded.scm (stlink)[origin]: Update it.
 2022-01-04 12:08:58 +01:00