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Author SHA1 Message Date
Ricardo Wurmus
f35f72d39d
gnu: r-raster: Update to 3.5-15. 
* gnu/packages/cran.scm (r-raster): Update to 3.5-15.
 2022-02-01 19:34:02 +01:00
Ricardo Wurmus
b160e65cc7
gnu: r-precrec: Update to 0.12.8. 
* gnu/packages/cran.scm (r-precrec): Update to 0.12.8.
 2022-02-01 19:34:02 +01:00
Ricardo Wurmus
03ffb471d8
gnu: r-reticulate: Update to 1.24. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.24.
 2022-02-01 19:34:02 +01:00
Ricardo Wurmus
c99e7e893e
gnu: r-renv: Update to 0.15.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.15.2.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
17cd7adfec
gnu: r-rastervis: Update to 0.51.2. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.51.2.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
300a06f6ea
gnu: r-randomizr: Update to 0.22.0. 
* gnu/packages/cran.scm (r-randomizr): Update to 0.22.0.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
69e7c3abba
gnu: r-pillar: Update to 1.6.5. 
* gnu/packages/cran.scm (r-pillar): Update to 1.6.5.
[propagated-inputs]: Add r-glue.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
25160b767f
gnu: r-broom: Update to 0.7.12. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.12.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
cbf65ae59a
gnu: r-energy: Update to 1.7-9. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-9.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
627c039e22
gnu: r-rcppthread: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rcppthread): Update to 2.0.1.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
d6bdad4d97
gnu: r-glue: Update to 1.6.1. 
* gnu/packages/cran.scm (r-glue): Update to 1.6.1.
 2022-02-01 19:34:01 +01:00
Ricardo Wurmus
664794e630
gnu: r-datawizard: Update to 0.2.3. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.3.
 2022-02-01 19:33:57 +01:00
jgart via Guix-patches via
239dc64c7d
gnu: lagrange: Update to 1.10.3. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.10.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-02-01 14:49:16 +02:00
Kyle Meyer
ce721bd2ce
gnu: git-annex: Update to 10.20220127. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220127.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-02-01 13:20:35 +02:00
Efraim Flashner
305330a585
gnu: python-ipython: Fix CVE detection. 
* gnu/packages/python-xyz.scm (python-ipython)[properties]: New field.
 2022-02-01 12:49:37 +02:00
Efraim Flashner
c5000dcc37
gnu: %final-inputs-riscv64: Add comment. 
* gnu/packages/commencement.scm (%final-inputs-riscv64): Add comment
explaining why this variable needs to exist.
 2022-02-01 12:33:28 +02:00
Efraim Flashner
73d93343ba
gnu: libaio: Fix test suite on riscv64-linux. 
* gnu/packages/linux.scm (libaio)[arguments]: Add phase to adjust test
code to properly handle riscv.
 2022-02-01 11:34:00 +02:00
Efraim Flashner
264162124f
gnu: openblas: Fix building on riscv64-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
 2022-02-01 10:44:53 +02:00
Maxim Cournoyer
c1043fd60d
doc: Add a rule of thumb to guide enabling new committers. 
* doc/contributing.texi (Commit Access): Introduce a new rule of thumb to
determine if a contributor should be considered to become a committer.
 2022-01-31 23:38:52 -05:00
Ludovic Courtès
4b297ebc0e
gnu: i3-wm: Add 'upstream-name' and 'release-monitoring-url'. 
* gnu/packages/wm.scm (i3-wm)[properties]: New field.
 2022-02-01 00:28:26 +01:00
Yusuf Talha
cd645d9cdd
gnu: i3-wm: Update to 4.20.1. 
* gnu/packages/wm.scm (i3-wm): Update to 4.20.1.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Remove #:configure-flags.
 2022-02-01 00:24:26 +01:00
Konrad Hinsen
c328d7fca1
doc: Document --profile option to "guix environment" 
* doc/guix.texi (Invoking guix environment): New paragraph.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-02-01 00:24:26 +01:00
Konrad Hinsen
cff54cc47c
doc: Document --profile option to "guix shell" 
* doc/guix.texi (Invoking guix shell): New paragraph.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-02-01 00:24:26 +01:00
Ludovic Courtès
c355fc5b94
gnu: Remove 'guile-3.0/libgc-7' variant. 
This variant had become unnecessary with
0aef94e7bc and related changes.

* gnu/packages/guile.scm (guile-3.0/libgc-7): Remove.
 2022-02-01 00:24:26 +01:00
Ludovic Courtès
1ebc702923
gnu: Add Lokke. 
* gnu/packages/guile.scm (guile-3.0-for-lokke): New variable.
* gnu/packages/guile-xyz.scm (lokke): New variable.
* gnu/packages/patches/guile-3.0.7-psyntax-nil.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-02-01 00:24:22 +01:00
Leo Famulari
e96edb056d
gnu: linux-libre 4.4: Update to 4.4.301. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.301.
(linux-libre-4.4-pristine-source): Update hash.
 2022-01-31 15:17:26 -05:00
Leo Famulari
8ff2e6c03e
gnu: linux-libre 4.9: Update to 4.9.299. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.299.
(linux-libre-4.9-pristine-source): Update hash.
 2022-01-31 15:17:26 -05:00
Leo Famulari
66939a220b
gnu: linux-libre 4.14: Update to 4.14.264. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.264.
(linux-libre-4.14-pristine-source): Update hash.
 2022-01-31 15:17:26 -05:00
Leo Famulari
f94b6663ad
gnu: linux-libre 4.19: Update to 4.19.227. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.227.
(linux-libre-4.19-pristine-source): Update hash.
 2022-01-31 15:17:26 -05:00
Leo Famulari
e179e9aa87
gnu: linux-libre 5.4: Update to 5.4.175. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.175.
(linux-libre-5.4-pristine-source): Update hash.
 2022-01-31 15:17:26 -05:00
Leo Famulari
f49ac0848a
gnu: linux-libre 5.10: Update to 5.10.95. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.95.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
 2022-01-31 15:17:26 -05:00
Leo Famulari
65a9dc3dcc
gnu: linux-libre: Update to 5.15.18. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.18.
(linux-libre-5.15-pristine-source, deblob-scripts-5.18): Update hashes.
 2022-01-31 15:17:25 -05:00
Leo Famulari
c39ca4c4ae
gnu: linux-libre 5.16: Update to 5.16.4. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.4.
(linux-libre-5.16-pristine-source, deblob-scripts-5.16): Update hashes.
 2022-01-31 15:17:25 -05:00
Andrew Tropin
b3a2c79fdc
gnu: OBS: Use new package style. 
* gnu/packages/video.scm (obs): Use new package style.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-31 14:02:25 -05:00
Christopher Baines
087cdafc9f
services: guix: Add nar-herder-service-type. 
* gnu/services/guix.scm (<nar-herder-configuration>): New record type.
(nar-herder-configuration, nar-herder-configuration?,
nar-herder-configuration-package,
nar-herder-configuration-user,
nar-herder-configuration-group,
nar-herder-configuration-mirror
nar-herder-configuration-database
nar-herder-configuration-database-dump
nar-herder-configuration-host
nar-herder-configuration-port
nar-herder-configuration-storage
nar-herder-configuration-storage-limit
nar-herder-configuration-storage-nar-removal-criteria
nar-herder-shepherd-services, nar-herder-activation,
nar-herder-account): New procedures.
(nar-herder-service-type): New variable.
* gnu/tests/guix.scm (%test-nar-herder): New variable.
* doc/guix.texi (Guix Services): Document the new service.
 2022-01-31 18:28:16 +00:00
Efraim Flashner
20d68aedbe
gnu: poke: Update to 2.0. 
* gnu/packages/engineering.scm (poke): Update to 2.0.
 2022-01-31 18:31:10 +02:00
Danny Milosavljevic
a0bf73143b
gnu: ruby-mustache: Fix race condition. 
* gnu/packages/patches/ruby-mustache-1.1.1-fix-race-condition-tests.patch:
New file.
* gnu/packages/ruby.scm (ruby-mustache)[source]<#:origin>: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-01-31 16:38:53 +01:00
Ricardo Wurmus
7fc8a6faf6
gnu: Add scvelo. 
* gnu/packages/bioinformatics.scm (scvelo): New variable.
 2022-01-31 16:07:40 +01:00
Ricardo Wurmus
9686c828ed
gnu: python-seaborn: Fix build. 
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add patch.
[arguments]: Add build phase 'patch-more-tests.
* gnu/packages/patches/python-seaborn-2690.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2022-01-31 16:07:40 +01:00
Ricardo Wurmus
f383aca408
gnu: python-anndata: Update to 0.7.8. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.8.
[arguments]: Embed the appropriate version string instead of letting it
try (and fail) to discover the correct string at load time.
[propagated-inputs]: Add python-xlrd-1.
 2022-01-31 16:07:40 +01:00
Ricardo Wurmus
ad516f4009
gnu: Add python-xlrd-1. 
* gnu/packages/python-xyz.scm (python-xlrd-1): New variable.
 2022-01-31 16:07:39 +01:00
Ricardo Wurmus
cd4bf5ecb4
gnu: python-louvain-0.6: Update to 0.7.1. 
* gnu/packages/graph.scm (python-louvain-0.6): Update to 0.7.1.
[arguments]: Add build phases 'find-igraph and 'pretend-version.
[native-inputs]: Add python-setuptools-scm and python-wheel.
Rename this variable...
(python-louvain-0.7): ...to this, naturally.
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Update
reference to python-louvain-0.6.
 2022-01-31 16:07:39 +01:00
Ricardo Wurmus
90b6b857fd
gnu: python-louvain: Update to 0.16. 
* gnu/packages/graph.scm (python-louvain): Update to 0.16.
 2022-01-31 16:07:39 +01:00
Ricardo Wurmus
9ce1fd24e3
gnu: bwa-meth: Remove trailing #T from build phase. 
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Remove trailing #T
from build phase.
 2022-01-31 16:07:39 +01:00
Ricardo Wurmus
f32a49fceb
gnu: bwa-meth: Update to 0.2.3. 
* gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.3.
 2022-01-31 16:07:39 +01:00
Julien Lepiller
9295b91116
gnu: fontmanager: Add missing input. 
* gnu/packages/fontutils.scm (fontmanager)[native-inputs]: Add
python-wrapper.
 2022-01-31 15:53:48 +01:00
Julien Lepiller
c636a8786e
gnu: java-log4j-api: Update to 2.17.1. 
* gnu/packages/java.scm (java-log4j-api): Update to 2.17.1.
 2022-01-31 15:29:14 +01:00
Vinicius Monego
1b778f03e0
gnu: pre-commit: Update to 2.17.0. 
* gnu/packages/version-control.scm (pre-commit): Update to 2.17.0.
 2022-01-31 10:56:33 -03:00
Vinicius Monego
4014672172
gnu: shotcut: Update to 22.01.30. 
* gnu/packages/video.scm (shotcut): Update to 22.01.30.
 2022-01-31 10:55:48 -03:00
Efraim Flashner
e217174b7b
gnu: texlive-bin: Fix building on riscv64-linux. 
* gnu/packages/tex.scm (texlive-bin)[arguments]: Adjust configure-flags
for riscv64-linux to skip luajit based binaries. Add phase to skip some
tests.
 2022-01-31 09:22:49 +02:00