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Author SHA1 Message Date
Ricardo Wurmus
45f1e079a5
gnu: r-scater: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
06fb533c28
gnu: r-rhdf5lib: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
e4c2155263
gnu: r-biocstyle: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
46178051d5
gnu: r-enrichplot: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
c5b7ade1c6
gnu: r-biocsingular: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
79b67d2f54
gnu: r-diffbind: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.2.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
005d3d4058
gnu: r-biostrings: Update to 2.60.1. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.1.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
495a9cff6d
gnu: r-biomart: Update to 2.48.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.1.
[propagated-inputs]: Add r-xml2.
 2021-06-17 14:25:36 +02:00
Ricardo Wurmus
49e8978452
gnu: r-annotationdbi: Update to 1.54.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.1.
 2021-06-17 14:25:36 +02:00
Tobias Geerinckx-Rice
f70ff65e0e
gnu: liba52: Note the type of stream. 
* gnu/packages/video.scm (liba52)[synopsis, description]: A is for audio.
 2021-06-17 11:19:19 +02:00
Tobias Geerinckx-Rice
571dc36a69
doc: Update QEMU command line. 
* doc/guix.texi (Invoking guix system): Substitute ‘-nic’ for the
obsolete ‘-net’.
 2021-06-17 11:19:19 +02:00
Tobias Geerinckx-Rice
d1744d2fbb
gnu: bcachefs-tools: Update to 0.1-8.fe1bb39. 
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-8.fe1bb39.
 2021-06-17 11:19:19 +02:00
Mathieu Othacehe
e12be802e0
installer: Improve the installation device detection method. 
Fixes: <https://issues.guix.gnu.org/47780>.

* gnu/installer/parted.scm (installation-device): New method.
(non-install-devices): Remove devices which are reported as read-only by
parted or which path is identical to the installation device path returned by
the above method.
 2021-06-17 11:00:26 +02:00
Mathieu Othacehe
f1a71be028
gnu: guile-parted: Update to 0.0.5. 
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.5.
 2021-06-17 10:10:08 +02:00
Brice Waegeneire
d65bd74411
gnu: openntpd: Get libressl version from the inputs. 
* gnu/packages/ntp.scm (openntpd)[arguments]: Get libressl version from
the package inputs.
 2021-06-17 08:28:14 +02:00
Brice Waegeneire
76a9bad380
gnu: libressl: Remove search paths. 
Unlike OpenSSL, LibreSSL hardcode it's certificate bundle and doesn't
allow to specify it through a environment variable.

* gnu/packages/tls.scm (libressl)[configure-flags]: Specify OpenSSL
configuration directory.
[native-search-paths]: Remove it.
* gnu/packages/ntp.scm (openntpd)[configure-flags]: Adjust CAcert
location.
 2021-06-17 08:14:47 +02:00
Brice Waegeneire
db87a223fe
gnu: brightnessctl: Add elogind support. 
* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (brightnessctl)[source]: Apply it.
[make-flags]: Enable logind support.
[native-inputs]: Add pkg-config.
[inputs]: Add elogind.
 2021-06-17 07:27:45 +02:00
Maxim Cournoyer
375d5d03c9
pack: Fix the system value passed to build-docker-image. 
Before this change, the system value would be passed as x86_64 when using a
i686-linux emulated system, e.g.:

  $ guix environment --system=i686-linux --ad-hoc  guile -- \
      guile -c '(display (utsname:machine (uname))) (newline)'
  x86_64

This change uses the Guile builtin %host-type variable, which doesn't have
this problem:

  $ guix environment --system=i686-linux --ad-hoc guile -- \
      guile -c '(display %host-type) (newline)'
  i686-unknown-linux-gnu

* guix/scripts/pack.scm (docker-image)[#:system] Use %host-type as a fall-back
when target is not defined.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-06-16 21:44:33 -04:00
Ricardo Wurmus
20ab92719e
gnu: Add undbx. 
* gnu/packages/mail.scm (undbx): New variable.
 2021-06-17 00:15:28 +02:00
Marius Bakke
f3e68e61ac
gnu: ffmpeg: Build with the latest SRT. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Change from SRT-1.4.1 to SRT.
 2021-06-16 19:07:26 +02:00
Marius Bakke
64fea6b49d
gnu: ungoogled-chromium: Update to 91.0.4472.106-0.bd0ffd1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 91.0.4472.106.
(ungoogled-chromium)[source]: Update checksum.
 2021-06-16 19:07:26 +02:00
Marius Bakke
0861dbdef6
gnu: node: Prepare for ICU 69. 
* gnu/packages/node.scm (node)[source](snippet): Add substitution.
 2021-06-16 19:07:26 +02:00
Solene Rapenne
80d0f88336
gnu: lagrange: Update to 1.5.2. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.5.2.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
 2021-06-16 19:05:19 +02:00
Solene Rapenne
67fe9379cf
gnu: weechat: Update to 3.2. 
* gnu/packages/irc.scm (weechat): Update to 3.2.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
 2021-06-16 19:05:15 +02:00
Leo Famulari
e26efac68c
gnu: HexChat: Add Libera Chat to the list of networks. 
* gnu/packages/patches/hexchat-add-libera-chat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (hexchat)[source]: Use it.
 2021-06-16 12:40:17 -04:00
Matthew James Kraai
0ee5525537
gnu: xterm: Update to 368. 
* gnu/packages/xorg.scm (xterm): Update to 368.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
 2021-06-16 14:14:51 +02:00
Nicolas Goaziou
382f8d0f7a
gnu: nushell: Update to 0.32.0. 
* gnu/packages/shells.scm (nushell): Update to 0.32.0.
(rust-nu-ansi-term-0.32):
(rust-nu-cli-0.32):
(rust-nu-command-0.32):
(rust-nu-data-0.32):
(rust-nu-engine-0.32):
(rust-nu-errors-0.32):
(rust-nu-json-0.32):
(rust-nu-parser-0.32):
(rust-nu-plugin-0.32):
(rust-nu-plugin-binaryview-0.32):
(rust-nu-plugin-chart-0.32):
(rust-nu-plugin-fetch-0.32):
(rust-nu-plugin-from-bson-0.32):
(rust-nu-plugin-from-sqlite-0.32):
(rust-nu-plugin-inc-0.32):
(rust-nu-plugin-match-0.32):
(rust-nu-plugin-post-0.32):
(rust-nu-plugin-query-json-0.32):
(rust-nu-plugin-sys-0.32):
(rust-nu-plugin-textview-0.32):
(rust-nu-plugin-to-bson-0.32):
(rust-nu-plugin-to-sqlite-0.32):
(rust-nu-plugin-tree-0.32):
(rust-nu-plugin-xpath-0.32):
(rust-nu-pretty-hex-0.32):
(rust-nu-protocol-0.32):
(rust-nu-stream-0.32):
(rust-nu-test-support-0.32):
(rust-nu-value-ext-0.32): Update to 0.32.0.
 2021-06-16 12:52:49 +02:00
Nicolas Goaziou
38761e0789
gnu: Add rust-polars-0.13. 
* gnu/packages/crates-io.scm (rust-polars-0.13): New variable.
 2021-06-16 12:52:48 +02:00
Nicolas Goaziou
63344d1eb0
gnu: Add rust-polars-lazy-0.13. 
* gnu/packages/crates-io.scm (rust-polars-lazy-0.13): New variable.
 2021-06-16 12:52:48 +02:00
Nicolas Goaziou
0162b1ddab
gnu: Add rust-polars-io-0.13. 
* gnu/packages/crates-io.scm (rust-polars-io-0.13): New variable.
 2021-06-16 12:52:48 +02:00
Nicolas Goaziou
a5ec61d535
gnu: Add rust-polars-core-0.13. 
* gnu/packages/crates-io.scm (rust-polars-core-0.13): New variable.
 2021-06-16 12:52:47 +02:00
Nicolas Goaziou
a33f036064
gnu: Add rust-polars-arrow-0.13. 
* gnu/packages/crates-io.scm (rust-polars-arrow-0.13): New variable.
 2021-06-16 12:52:47 +02:00
Nicolas Goaziou
ae31d80d00
gnu: Add rust-ndarray-0.13. 
* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable.
(rust-ndarray-0.12): Inherit from above.
* gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file.
* gnu/local.mk: Register new file.
 2021-06-16 12:52:46 +02:00
Nicolas Goaziou
bc83252616
gnu: Add rust-comfy-table-1. 
* gnu/packages/crates-io.scm (rust-comfy-table-1): New variable.
 2021-06-16 12:52:46 +02:00
Nicolas Goaziou
6483ae57a5
gnu: Add rust-strum-0.20. 
* gnu/packages/crates-io.scm (rust-strum-0.20): New variable.
(rust-strum-0.18): Inherit from above.
 2021-06-16 12:52:46 +02:00
Nicolas Goaziou
c7f8a69450
gnu: Add rust-strum-macros-0.20. 
* gnu/packages/crates-io.scm (rust-strum-macros-0.20): New variable.
(rust-strum-macros-0.18): Inherit from above.
 2021-06-16 12:52:45 +02:00
Nicolas Goaziou
24646f2205
gnu: Add rust-parquet-4. 
* gnu/packages/crates-io.scm (rust-parquet-4): New variable.
 2021-06-16 12:52:45 +02:00
Nicolas Goaziou
abd11a9bdd
gnu: Add rust-arrow-4. 
* gnu/packages/crates-io.scm (rust-arrow-4): New variable.
 2021-06-16 12:52:44 +02:00
Nicolas Goaziou
55312e9fe0
gnu: Add rust-multiversion-0.6. 
* gnu/packages/crates-io.scm (rust-multiversion-0.6): New variable.
 2021-06-16 12:52:44 +02:00
Nicolas Goaziou
1e6bd256a3
gnu: Add rust-multiversion-macros-0.6. 
* gnu/packages/crates-io.scm (rust-multiversion-macros-0.6): New variable.
 2021-06-16 12:52:44 +02:00
Nicolas Goaziou
4ef6cb1bba
gnu: Add rust-cfg-aliases-0.1. 
* gnu/packages/crates-io.scm (rust-cfg-aliases-0.1): New variable.
 2021-06-16 12:52:43 +02:00
Nicolas Goaziou
61a8983af5
gnu: Add rust-flatbuffers-0.8. 
* gnu/packages/crates-io.scm (rust-flatbuffers-0.8): New variable.
 2021-06-16 12:52:43 +02:00
Nicolas Goaziou
1436e57652
gnu: Add rust-num-0.4. 
* gnu/packages/crates-io.scm (rust-num-0.4): New variable.
(rust-num-0.3): Inherit from above.
 2021-06-16 12:52:42 +02:00
Nicolas Goaziou
bf8bb260d0
gnu: rust-num-iter-0.1: Update to 0.1.42. 
* gnu/packages/crates-io.scm (rust-num-iter-0.1): Update to 0.1.42.
(arguments)<#:cargo-inputs>: Re-order alphabetically.
 2021-06-16 12:52:42 +02:00
Nicolas Goaziou
e0d7025bc2
gnu: Add rust-num-rational-0.4. 
* gnu/packages/crates-io.scm (rust-num-rational-0.4): New variable.
(rust-num-rational-0.3): Inherit from above.
 2021-06-16 12:52:42 +02:00
Nicolas Goaziou
267c64d2c3
gnu: Add rust-num-complex-0.4. 
* gnu/packages/crates-io.scm (rust-num-complex-0.4): New variable.
(rust-num-complex-0.3): Inherit from above.
 2021-06-16 12:52:41 +02:00
Nicolas Goaziou
9b4ad2f44c
gnu: Add rust-num-bigint-0.4. 
* gnu/packages/crates-io.scm (rust-num-bigint-0.4): New variable.
(rust-num-bigint-0.3): Inherit from above.
 2021-06-16 12:52:41 +02:00
Nicolas Goaziou
fa071844d9
gnu: Add rust-rusqlite-0.25. 
* gnu/packages/crates-io.scm (rust-rusqlite-0.25): New variable.
(rust-rusqlite-0.24): Inherit from above.
 2021-06-16 12:52:40 +02:00
Nicolas Goaziou
09e1cebcdc
gnu: Add rust-hashlink-0.7. 
* gnu/packages/crates-io.scm (rust-hashlink-0.7): New variable.
(rust-hashlink-0.6): Inherit from above.
 2021-06-16 12:52:40 +02:00
Nicolas Goaziou
608e342d1f
gnu: Add rust-hashbrown-0.11. 
* gnu/packages/crates-io.scm (rust-hashbrown-0.11): New variable.
(rust-hashbrown-0.9): Inherit from above.
 2021-06-16 12:52:39 +02:00