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Author SHA1 Message Date
Ricardo Wurmus
c5c6719f92
gnu: r-genomeinfodb: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.1.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
775c6f402c
gnu: r-forecast: Update to 8.12. 
* gnu/packages/cran.scm (r-forecast): Update to 8.12.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
32fbd12348
gnu: r-rematch2: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rematch2): Update to 2.1.1.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
8310b036d8
gnu: r-afex: Update to 0.27-2. 
* gnu/packages/cran.scm (r-afex): Update to 0.27-2.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
5a0fb78edb
gnu: r-fs: Update to 1.4.0. 
* gnu/packages/cran.scm (r-fs): Update to 1.4.0.
[propagated-inputs]: Remove r-rcpp.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
c639485645
gnu: r-performance: Update to 0.4.5. 
* gnu/packages/cran.scm (r-performance): Update to 0.4.5.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
76fb1e8f3f
gnu: r-heatmaply: Update to 1.1.0. 
* gnu/packages/cran.scm (r-heatmaply): Update to 1.1.0.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
c7e4a01669
gnu: r-quantmod: Update to 0.4.17. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.17.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
dbf4aaeab8
gnu: r-tinytex: Update to 0.21. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.21.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
29825fe290
gnu: r-callr: Update to 3.4.3. 
* gnu/packages/cran.scm (r-callr): Update to 3.4.3.
 2020-04-01 11:15:26 +02:00
Ricardo Wurmus
0b4067277e
gnu: r-sn: Update to 1.6-0. 
* gnu/packages/statistics.scm (r-sn): Update to 1.6-0.
[propagated-inputs]: Add r-quantreq.
 2020-04-01 11:15:25 +02:00
Ricardo Wurmus
13472a670c
gnu: r-gtools: Update to 3.8.2. 
* gnu/packages/statistics.scm (r-gtools): Update to 3.8.2.
 2020-04-01 11:15:25 +02:00
Ricardo Wurmus
383895dde4
gnu: r-foreach: Update to 1.5.0. 
* gnu/packages/statistics.scm (r-foreach): Update to 1.5.0.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:25 +02:00
Ricardo Wurmus
53477d9786
gnu: r-tibble: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, r-magrittr, and r-vctrs.
[native-inputs]: Add r-knitr.
 2020-04-01 11:15:25 +02:00
John Soo
31e47945d3
gnu: Add emacs-elf-mode. 
* gnu/packages/emacs-xyz.scm (emacs-elf-mode): New variable.
 2020-04-01 10:43:44 +02:00
John Soo
61e10fa839
gnu: Add emacs-imenu-list. 
* gnu/packages/emacs-xyz.scm (emacs-imenu-list): New variable.
 2020-04-01 10:36:39 +02:00
John Soo
1d5c93d9f8
gnu: Add emacs-evil-tmux-navigator. 
* gnu/packages/emacs-xyz.scm (emacs-evil-tmux-navigator): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-04-01 09:04:53 +01:00
Efraim Flashner
fba0fea4a6
gnu: toot: Adjust custom phases. 
* gnu/packages/mastodon.scm (toot)[arguments]: 'check is already run
after 'install so replace 'check rather than re-inserting it.
 2020-04-01 10:22:33 +03:00
Efraim Flashner
b7417f3d54
gnu: toot: Update to 0.25.2. 
* gnu/packages/mastodon.scm (toot): Update to 0.25.2.
 2020-04-01 10:21:48 +03:00
Efraim Flashner
5619741752
gnu: vim-asyncrun: Update to 2.7.1. 
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.1.
 2020-04-01 10:19:33 +03:00
Efraim Flashner
2a844af991
gnu: mpv-mpris: Switch to copy-build-system. 
* gnu/packages/video.scm (mpv-mpris)[build-system]: Switch to
copy-build-system.
[arguments]: Add custom 'build phase before 'install phase.
 2020-04-01 10:17:47 +03:00
Efraim Flashner
b51a37b116
gnu: mpv-mpris: Update to 0.4. 
* gnu/packages/video.scm (mpv-mpris): Update to 0.4.
 2020-04-01 10:11:35 +03:00
Efraim Flashner
dbb58f28ea
gnu: font-gnu-unifont: Update to 13.0.01. 
* ngu/packages/fonts.scm (font-gnu-unifont): Update to 13.0.01.
[home-page]: Follow redirect.
 2020-04-01 09:39:13 +03:00
Efraim Flashner
17264e362c
gnu: emacs-discover-my-major: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-discover-my-major)[source]: Download
using git-fetch. Use new upstream URI.
[home-page]: Update to new home-page.
 2020-04-01 09:16:24 +03:00
Efraim Flashner
f12bd0bedd
system: Move nanorc to XDG_CONFIG_HOME. 
* gnu/system/shadow.scm (skeleton-directory): Move .nanorc to
.config/nano/nanorc.
 2020-04-01 07:50:48 +03:00
Ricardo Wurmus
92dae7a605
gnu: mumi: Update to 0.0.0-11.0e9af8d. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-11.0e9af8d.
 2020-04-01 06:07:28 +02:00
Raghav Gururajan
f1cf62f5dc
gnu: Add libantlr3c. 
* gnu/packages/java.scm (libantlr3c): New variable.

Co-authored by Maxim Cournoyer.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2020-03-31 22:31:43 -04:00
Ricardo Wurmus
284b27c5ae
gnu: mumi: Update to 0.0.0-10.f7d6a54. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-10.f7d6a54.
 2020-04-01 04:28:19 +02:00
Kyle Meyer
9cbc5fae80
gnu: git-annex: Update to 8.20200330. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200330.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-04-01 01:20:42 +02:00
Jack Hill
a7cc13ed83
gnu: gimp: Disable automatic update checking 
* gnu/packages/gimp.scm (gimp)[arguments]: Disable update checking
in #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-31 18:39:56 -04:00
Ludovic Courtès
e62f6f77fe
gnu: gnumach: Fix compilation. 
* gnu/packages/hurd.scm (gnumach)[arguments]: Inherit arguments from
GNUMACH-HEADERS.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and TEXINFO-4.
 2020-04-01 00:12:31 +02:00
Ludovic Courtès
b87d7002b7
Revert "gnu: coreutils: Fix cross-compilation to i586-pc-gnu." 
This reverts commit 67cbfeae30, which is
not longer necessary now that the 'ld.so' linker script of the cross
glibc contains "libhurduser.so libmachuser.so".
 2020-04-01 00:12:31 +02:00
Jan Nieuwenhuizen
b3bd475696
gnu: cross-libc: Build fix for the Hurd. 
This fixes cross building of coreutils, e.g.

    ./pre-inst-env guix build --target=i586-pc-gnu coreutils

* gnu/packages/cross-base.scm (cross-libc): Add -lhurduser, -lmachuser for the
Hurd.
 2020-04-01 00:12:31 +02:00
Raghav Gururajan
d82539d35f
gnu: Add spandsp. 
* gnu/packages/telephony.scm (spandsp): New variable.

Co-authored by Maxim Cournoyer.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2020-03-31 17:02:58 -04:00
Vitaliy Shatrov
3de5b4047e
gnu: Add neverball 
* gnu/packages/games.scm (neverball): New variable.
 2020-03-31 20:19:21 +02:00
Leo Famulari
653a51cb28
gnu: pam-krb5: Fix CVE-2020-10595. 
* gnu/packages/patches/pam-krb5-CVE-2020-10595.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (pam-krb5)[source]: Use it.
 2020-03-31 13:31:57 -04:00
Leo Famulari
2206805c2c
gnu: python-pyyaml: Update to 5.3.1 [fixes CVE-2020-1747] 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.1.
 2020-03-31 13:18:47 -04:00
Paul Garlick
233e1ed3ad
gnu: Add perl-class-mix. 
* gnu/packages/perl.scm (perl-class-mix): New variable.
 2020-03-31 17:47:06 +01:00
Paul Garlick
f73e7fea69
gnu: Add perl-params-classify. 
* gnu/packages/perl.scm (perl-params-classify): New variable.
 2020-03-31 17:47:05 +01:00
Paul Garlick
e3f892ae91
gnu: Add perl-devel-callchecker. 
* gnu/packages/perl.scm (perl-devel-callchecker): New variable.
 2020-03-31 17:47:04 +01:00
Paul Garlick
f83674aa46
gnu: Add perl-dynaloader-functions. 
* gnu/packages/perl.scm (perl-dynaloader-functions): New variable.
 2020-03-31 17:46:55 +01:00
Ricardo Wurmus
11ef009e7a
gnu: mumi: Update to 0.0.0-9.5fdbc3e. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-9.5fdbc3e.
 2020-03-31 17:50:51 +02:00
Arne Babenhauserheide
ef4b5f2fed
profiles: Compute manual database entries in parallel. 
This provides a 36% speedup on an SSD and 4 cores for the 1.5K man pages
in the manual database derivation of:

  guix environment --ad-hoc jupyter python-ipython python-ipykernel

* guix/profiles.scm (manual-database)[build]: Add 'print-string',
'print', and 'compute-entry'.  Change 'compute-entries' to call
'compute-entry' in 'n-par-map'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-31 14:55:42 +02:00
Ludovic Courtès
67cbfeae30
gnu: coreutils: Fix cross-compilation to i586-pc-gnu. 
Until now cross-compilation would fail with:

  i586-pc-gnu-ld: src/copy.o: undefined reference to symbol 'file_chauthor'
  i586-pc-gnu-ld: /gnu/store/…-glibc-cross-i586-pc-gnu-2.29/lib/libhurduser.so.0.3: error adding symbols: DSO missing from command line
  collect2: error: ld returned 1 exit status

* gnu/packages/base.scm (coreutils)[arguments]: When 'hurd-target?', add
 #:configure-flags.
 2020-03-31 14:55:42 +02:00
Ludovic Courtès
2c33901fb1
ci: Fix 'evaluation-spec' binding. 
* guix/ci.scm (<evaluation>)[spec]: Add "specification", which is what
the JSON field is actually called.
 2020-03-31 14:55:42 +02:00
Ludovic Courtès
06efbe2fba
gnu: hwloc@2: Update to 2.2.0. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.2.0.
 2020-03-31 14:55:42 +02:00
Ludovic Courtès
8db4e704dc
gnu: hwloc@2: Skip test that fails on emulated hardware. 
Works around <https://bugs.gnu.org/40342>.

* gnu/packages/mpi.scm (hwloc-2)[arguments]: Add
'skip-test-that-fails-on-qemu' phase.
 2020-03-31 14:55:42 +02:00
Alexandru-Sergiu Marton
031610aa8a
gnu: scdoc: Update to 1.10.1. 
* gnu/packages/man.scm (scdoc): Update to 1.10.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-03-31 15:51:07 +03:00
Tobias Geerinckx-Rice
4b163550bd
gnu: Order module imports in (gnu packages ntp). 
This shouldn't cause any conflicts :-)

* gnu/packages/ntp.scm: Order module imports alphabetically.
 2020-03-31 14:30:39 +02:00
Tobias Geerinckx-Rice
5acea98e4b
gnu: sonic: Fix installation directories. 
* gnu/packages/speech.scm (sonic)[arguments]: Replace erroneous use of
DESTDIR with PREFIX.  Add the required ‘rpath’ LDFLAGS together with a
‘respect-LDFLAGS’ phase.
 2020-03-31 14:30:39 +02:00