Commit graph

109960 commits

Author SHA1 Message Date
Nicolas Goaziou
2232666e19
gnu: emacs-ef-themes: Update to 0.11.0.
* gnu/packages/emacs-xyz.scm (emacs-ef-themes): Update to 0.11.0.
2023-03-16 00:10:55 +01:00
Nicolas Goaziou
9b12dd9dda
gnu: emacs-citar: Run tests.
* gnu/packages/emacs-xyz.scm (emacs-citar)[arguments]: Run tests.
2023-03-16 00:10:54 +01:00
Nicolas Goaziou
179eaf02c4
gnu: emacs-citar: Update to 1.2.0.
* gnu/packages/emacs-xyz.scm (emacs-citar): Update to 1.2.0.
2023-03-16 00:10:54 +01:00
Nicolas Goaziou
511225c661
gnu: emacs-xref: Update to 1.6.3.
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.6.3.
2023-03-16 00:10:53 +01:00
Nicolas Goaziou
858feeb801
gnu: emacs-eglot: Update to 1.13.
* gnu/packages/emacs-xyz.scm (emacs-eglot): Update to 1.13.
2023-03-16 00:10:53 +01:00
Nicolas Goaziou
2a3d773cbb
gnu: emacs-subed: Update to 1.2.0.
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.2.0.
2023-03-16 00:10:53 +01:00
Nicolas Graves via Guix-patches via
6cc350ed0d
gnu: emacs-julia-snail: Update propagated-inputs.
* gnu/packages/emacs-xyz.scm (emacs-julia-snail)[propagated-inputs]: Add
JULIA-TOKENIZE and JULIA-CSTPARSER.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:52 +01:00
Nicolas Graves via Guix-patches via
6993977548
gnu: Add julia-cstparser.
* gnu/packages/julia-xyz.scm (julia-cstparser): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:52 +01:00
Nicolas Graves via Guix-patches via
96801c11c8
gnu: Add julia-tokenize.
* gnu/packages/julia-xyz.scm (julia-tokenize): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:51 +01:00
Nicolas Graves via Guix-patches via
834440f65a
gnu: emacs-julia-snail: Update include list.
* gnu/packages/emacs-xyz.scm (emacs-julia-snail): Update include list.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:51 +01:00
Rostislav Svoboda
41849eae78
gnu: Add emacs-ac-php.
* gnu/packages/emacs-xyz.scm (emacs-ac-php): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:51 +01:00
Rostislav Svoboda
28bf6720e7
gnu: Add emacs-xcscope.
* gnu/packages/emacs-xyz.scm (emacs-xcscope): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:50 +01:00
Ricardo Wurmus
4496ff34a3
gnu: Add r-conqur.
* gnu/packages/bioinformatics.scm (r-conqur): New variable.
2023-03-15 18:31:23 +01:00
Ricardo Wurmus
8309556cf3
gnu: Add r-cqrreg.
* gnu/packages/cran.scm (r-cqrreg): New variable.
2023-03-15 18:25:57 +01:00
Ricardo Wurmus
eb467fe231
gnu: Add r-fastdummies.
* gnu/packages/cran.scm (r-fastdummies): New variable.
2023-03-15 18:25:09 +01:00
Ricardo Wurmus
953d808d28
gnu: r-biocthis: Update to 1.8.3.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
81697789df
gnu: r-chromvar: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
d9f29e0342
gnu: r-fishpond: Update to 2.4.1.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
0d90a01416
gnu: r-s4vectors: Update to 0.36.2.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
400c046942
gnu: r-biocviews: Update to 1.66.3.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b21a06353a
gnu: r-bioccheck: Update to 1.34.3.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
2731b5a58c
gnu: r-variancepartition: Update to 1.28.7.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.7.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
5d800ec66b
gnu: r-circrnaprofiler: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
78fbd6f666
gnu: r-cicero: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
20300ca9c1
gnu: r-rsubread: Update to 2.12.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
9ee316a7e4
gnu: r-iclusterplus: Update to 1.34.3.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
01911fa0a4
gnu: r-rbowtie2: Update to 2.4.2.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
ab6909adf0
gnu: r-motifbreakr: Update to 2.12.3.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
e952be7fb2
gnu: r-clusterexperiment: Update to 2.18.2.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
7f7e39b89b
gnu: r-clusterprofiler: Update to 4.6.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
0e1edb67ae
gnu: r-sigpathway: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
f8c823274d
gnu: r-linnorm: Update to 2.22.2.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
969e7f1c4f
gnu: r-glmgampoi: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
590897d28f
gnu: r-diffbind: Update to 3.8.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
af9bcbe90f
gnu: r-scmap: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
8c8930691c
gnu: r-mutationalpatterns: Update to 3.8.1.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
364d9b7c17
gnu: r-muscat: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
586d2bb696
gnu: r-limma: Update to 3.54.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
810a8e5060
gnu: r-lfa: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
20b1ef8047
gnu: r-genomicalignments: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
7f9346c031
gnu: r-annotationdbi: Update to 1.60.2.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b9af764895
gnu: r-infercnv: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b28eff5aec
gnu: r-bandits: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
eeece329e8
gnu: r-bambu: Update to 3.0.8.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
fee92975a2
gnu: r-atena: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1.
[propagated-inputs]: Add r-matrixstats.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
9df1de70e1
gnu: r-alpsnmr: Update to 4.0.4.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4.
[propagated-inputs]: Add r-cli.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
accebcfce5
gnu: r-biocpkgtools: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1.
[source]: Add snippet to remove bundled minified JavaScript files.
[native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and
js-underscore.
[arguments]: Add build phase 'process-javascript.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
db17611dc9
gnu: r-mast: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-jquery-sticky-kit.
2023-03-15 17:40:38 +01:00
Pierre Neidhardt
cacd7b6768
gnu: sbcl-nclasses: Update to 0.3.0.
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0.
2023-03-15 17:33:16 +01:00
jgart
8a47949463
gnu: Add sbcl-stumpwm-hostname.
* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-03-15 15:49:20 +01:00