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Author SHA1 Message Date
Ludovic Courtès
ecf92194a5
gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080]. 
* gnu/packages/web.scm (nghttp2-1.41): New variable.
(nghttp2)[replacement]: New field.
 2020-06-11 19:05:05 +02:00
Ludovic Courtès
03a70e4c19
packages: 'package-grafts' returns grafts for all the relevant outputs. 
Fixes <https://bugs.gnu.org/41796>.
Reported by Jakub Kądziołka <kuba@kadziolka.net>.

* guix/packages.scm (input-graft): Add 'output' parameter and honor it.
Add OUTPUT to the cache key.
(input-cross-graft): Likewise.
(fold-bag-dependencies): Operate on inputs instead of nodes.  Turn
VISITED into a vhash instead of a set.  Pass PROC HEAD and OUTPUT
instead of just HEAD.
(bag-grafts): Adjust accordingly.
* tests/packages.scm ("package-grafts, dependency on several outputs"):
New test.
 2020-06-11 19:05:05 +02:00
Ricardo Wurmus
cbd9581acc
gnu: r-with-tests, r-minimal: Update to 4.0.1. 
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
67ee20fbd2
gnu: r-brms: Update to 2.13.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
20702ad9a3
gnu: r-crochet: Update to 2.3.0. 
* gnu/packages/cran.scm (r-crochet): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
e5884ce4c7
gnu: r-openmx: Update to 2.17.4. 
* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
b34ba0649a
gnu: r-stanheaders: Update to 2.21.0-5. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5.
[propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
3a9a695255
gnu: r-semtools: Update to 0.5-3. 
* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
bd76f9561d
gnu: r-sem: Update to 3.1-11. 
* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
db4d3b2581
gnu: r-emplik: Update to 1.1-1. 
* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
de26ce7265
gnu: r-rsvg: Update to 2.1. 
* gnu/packages/cran.scm (r-rsvg): Update to 2.1.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
8ddf3be097
gnu: r-actuar: Update to 3.0-0. 
* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
8050cce35d
gnu: r-gdina: Update to 2.8.0. 
* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
242fae8edf
gnu: r-seewave: Update to 2.1.6. 
* gnu/packages/cran.scm (r-seewave): Update to 2.1.6.
[inputs]: Add libsndfile.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
30031516d1
gnu: r-elasticnet: Update to 1.3. 
* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
bb714ae79f
gnu: r-showtext: Update to 0.8-1. 
* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
8957a336f7
gnu: r-showtextdb: Update to 3.0. 
* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
b99ed8e6e5
gnu: r-abcrlda: Update to 1.0.3. 
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
7262c1ff18
gnu: r-rgdal: Update to 1.5-10. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
dfd0b55f9e
gnu: r-parameters: Update to 0.8.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
53bf76c574
gnu: r-systemfonts: Update to 0.2.3. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
897ed4a76f
gnu: r-rhpcblasctl: Update to 0.20-137. 
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
4c4c34a154
gnu: r-ggraph: Update to 2.0.3. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
ed7fa0af07
gnu: r-europepmc: Update to 0.4. 
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.
[propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
93043ba337
gnu: r-msigdbr: Update to 7.1.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
a50246f455
gnu: r-bookdown: Update to 0.19. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.19.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
5547b4360f
gnu: r-rms: Update to 6.0-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.0-0.
[propagated-inputs]: Add r-cluster, r-digest, and r-mass.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
d263b2d67b
gnu: r-polspline: Update to 1.1.19. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.19.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
5130c454dd
gnu: r-lemon: Update to 0.4.5. 
* gnu/packages/cran.scm (r-lemon): Update to 0.4.5.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
2de55fbab9
gnu: r-picante: Update to 1.8.2. 
* gnu/packages/cran.scm (r-picante): Update to 1.8.2.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
e27fc23b07
gnu: r-lavaan: Update to 0.6-6. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
52d7306100
gnu: r-cmprsk: Update to 2.2-10. 
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
4c96ee1c40
gnu: r-gmp: Update to 0.6-0. 
* gnu/packages/cran.scm (r-gmp): Update to 0.6-0.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
d6df7299d3
gnu: r-bigrquery: Update to 1.3.1. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
f71791c501
gnu: r-iso: Update to 0.0-18.1. 
* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
fc1db3fcf5
gnu: r-sjplot: Update to 2.8.4. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
4a0fbb7799
gnu: r-effectsize: Update to 0.3.1. 
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
9908ec56cd
gnu: r-bayesplot: Update to 1.7.2. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
a4a34d3ea8
gnu: r-emmeans: Update to 1.4.7. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.7.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
0220c89e96
gnu: r-mosaicdata: Update to 0.18.0. 
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.18.0.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
4223df8af1
gnu: r-doby: Update to 4.6.6. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.6.
[propagated-inputs]: Remove r-dplyr and r-plyr.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
400d0c96d0
gnu: r-flextable: Update to 0.5.10. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.10.
[propagated-inputs]: Add r-uuid.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
38ea73aaf2
gnu: r-sjmisc: Update to 2.8.5. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.5.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
ffb5225fd1
gnu: r-sjlabelled: Update to 1.1.5. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.5.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
2ab00525df
gnu: r-insight: Update to 0.8.5. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.5.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
ee19cc9a4b
gnu: r-overlap: Update to 0.3.3. 
* gnu/packages/cran.scm (r-overlap): Update to 0.3.3.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
79d23a02c6
gnu: r-officer: Update to 0.3.11. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.11.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
ff7d4d56ed
gnu: r-ellipse: Update to 0.4.2. 
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.2.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
9a80792902
gnu: r-reticulate: Update to 1.16. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.16.
 2020-06-11 17:03:45 +02:00
Ricardo Wurmus
34a0a2412b
gnu: r-promises: Update to 1.1.1. 
* gnu/packages/cran.scm (r-promises): Update to 1.1.1.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:44 +02:00