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Author SHA1 Message Date
Ricardo Wurmus
6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
d71605294f
gnu: Add r-wgcna. 
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
e619a5c245
gnu: Add r-r4rna. 
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus
58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus
eb21d24806
gnu: lv2: Update to 1.14.0. 
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
 2016-11-28 22:08:37 +01:00
Ricardo Wurmus
1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
 2016-11-28 22:07:20 +01:00
Efraim Flashner
5e9cce55b5
gnu: ntp: Update to 4.2.8p9. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
 2016-11-28 21:56:30 +02:00
Efraim Flashner
d35de59b64
gnu: ntp: Fix indentation. 
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
 2016-11-28 20:53:14 +02:00
John Darrington
f0ddc5e55b
gnu: Add editres. 
* gnu/packages/xorg.scm (editres): New variable.
 2016-11-28 18:22:15 +01:00
Ben Woodcroft
9926875572
gnu: Add newick-utils. 
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
 2016-11-28 09:00:41 +10:00
Efraim Flashner
c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues]. 
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
 2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice
f6c44a3f04
gnu: gphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice
69874f5fd2
gnu: libgphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Leo Famulari
f27ec24d88
gnu: beets: Update to 1.4.1. 
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
 2016-11-27 14:49:36 -05:00
Leo Famulari
d3db5efbf9
gnu: Add python-discogs-client. 
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
 2016-11-27 14:49:36 -05:00
Leo Famulari
6782444764
gnu: python-rarfile: Update to 2.8. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-27 14:49:35 -05:00
Leo Famulari
8c4964dd51
gnu: python-jellyfish: Update to 0.5.6. 
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
 2016-11-27 14:49:35 -05:00
Leo Famulari
b04d9b97c4
gnu: python-pylast: Update 1.6.0. 
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
 2016-11-27 14:49:35 -05:00
Leo Famulari
daedf34db9
gnu: python-musicbrainzngs: Update to 0.6. 
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
 2016-11-27 14:49:35 -05:00
Leo Famulari
38e81a2c55
gnu: python-munkres: Update to 1.0.8. 
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
 2016-11-27 14:49:34 -05:00
Leo Famulari
4228a79e6f
gnu: python-mutagen: Update to 1.35.1. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
 2016-11-27 14:49:30 -05:00
Ricardo Wurmus
1bf5a7e920
gnu: gcj: Inherit source field from "gcc". 
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
 2016-11-27 19:00:57 +01:00
Ricardo Wurmus
bac6409970
gnu: gcj: Correct paths in ARM patch. 
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
 2016-11-27 18:59:54 +01:00
Marius Bakke
8c4140e49e
gnu: notmuch: Update to 0.23.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
 2016-11-27 18:29:44 +01:00
Leo Famulari
cd569f0d29
gnu: gcj: Fix typo in patch filename. 
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
 2016-11-27 10:57:33 -05:00
Danny Milosavljevic
7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs. 
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 13:23:53 +01:00
Marius Bakke
cf7daaf5da
gnu: docbook-xsl: Update to 1.79.1. 
* gnu/packages/docbook.scm (docbook-xsl): Update to 1.79.1.
 2016-11-27 11:26:49 +01:00
Marius Bakke
988e1dca4b
gnu: udisks: Update to 2.1.8. 
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
 2016-11-27 11:13:50 +01:00
Maxim Cournoyer
aef5055ff9
gnu: udisks: Add manpages. 
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 11:10:31 +01:00
Ricardo Wurmus
dbf8f84f15
gnu: gcj: Fix build on armhf. 
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
 2016-11-27 10:04:57 +01:00
Ricardo Wurmus
253cdd6c14
gnu: Add biber-2.5. 
* gnu/packages/tex.scm (biber-2.5): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
d400068085
gnu: Add biber. 
* gnu/packages/tex.scm (biber): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
ebcf74daf8
gnu: Add perl-text-bibtex. 
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
93863a5e72
gnu: Add perl-xml-libxslt. 
* gnu/packages/xml.scm (perl-xml-libxslt): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
df669244f9
gnu: perl-unicode-linebreak: Update to 2016.003. 
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
5d2ecbffb2
gnu: Add perl-unicode-collate. 
* gnu/packages/perl.scm (perl-unicode-collate): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
37e7a4929f
gnu: Add perl-unicode-normalize. 
* gnu/packages/perl.scm (perl-unicode-normalize): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus
dc32ee5381
gnu: Add perl-text-roman. 
* gnu/packages/perl.scm (perl-text-roman): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus
44c31aaae8
gnu: Add perl-text-csv-xs. 
* gnu/packages/perl.scm (perl-text-csv-xs): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus
0ef5191c88
gnu: Add perl-sort-key. 
* gnu/packages/perl.scm (perl-sort-key): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus
3521dc9293
gnu: Add perl-mozilla-ca. 
* gnu/packages/perl.scm (perl-mozilla-ca): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus
37115dc650
gnu: Add perl-lingua-translit. 
* gnu/packages/perl.scm (perl-lingua-translit): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
e9ef394ac9
gnu: Add perl-ipc-cmd. 
* gnu/packages/perl.scm (perl-ipc-cmd): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
81157cf5a7
gnu: Add perl-extutils-libbuilder. 
* gnu/packages/perl.scm (perl-extutils-libbuilder): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
0185442003
gnu: Add perl-encode-hanextra. 
* gnu/packages/perl.scm (perl-encode-hanextra): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
2bc1b85ce6
gnu: Add perl-encode-jis2k. 
* gnu/packages/perl.scm (perl-encode-jis2k): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
891d9679a2
gnu: Add perl-encode-eucjpascii. 
* gnu/packages/perl.scm (perl-encode-eucjpascii): New variable.
 2016-11-27 09:48:41 +01:00
Ricardo Wurmus
49a3fcc13c
gnu: perl-encode-detect: Move to alphabetical position. 
* gnu/packages/perl.scm (perl-encode-detect): Move variable definition.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
7a146c2528
gnu: Add perl-datetime-calendar-julian. 
* gnu/packages/perl.scm (perl-datetime-calendar-julian): New variable.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
36dd594316
gnu: Add perl-date-simple. 
* gnu/packages/perl.scm (perl-date-simple): New variable.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
cc3dafbb02
gnu: Add perl-data-uniqid. 
* gnu/packages/perl.scm (perl-data-uniqid): New variable.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
9413e95f59
gnu: Add perl-data-compare. 
* gnu/packages/perl.scm (perl-data-compare): New variable.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
adbf4b944c
gnu: Add perl-business-ismn. 
* gnu/packages/perl.scm (perl-business-ismn): New variable.
 2016-11-27 09:48:40 +01:00
Ricardo Wurmus
296663839b
gnu: Add perl-tie-cycle. 
* gnu/packages/perl.scm (perl-tie-cycle): New variable.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
e0b6accf19
gnu: Add perl-business-issn. 
* gnu/packages/perl.scm (perl-business-issn): New variable.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
72f8646ef5
gnu: Add perl-business-isbn. 
* gnu/packages/perl.scm (perl-business-isbn): New variable.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
a3f5beb7a2
gnu: Add perl-business-isbn-data. 
* gnu/packages/perl.scm (perl-business-isbn-data): New variable.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
3f1df54cc0
gnu: Add perl-autovivification. 
* gnu/packages/perl.scm (perl-autovivification): New variable.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
d4ba9a5f21
gnu: Add perl-mojolicious. 
* gnu/packages/perl-web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-11-27 09:48:39 +01:00
Ricardo Wurmus
45591fd7fd
gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host. 
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): New
variables.
* gnu/packages/audio.scm (ardour)[inputs]: Replace "fftw" and "fftwf"
with "fftw-with-threads" and "fftwf-with-threads", respectively.
* gnu/packages/music.scm (mod-host)[inputs]: Likewise.
 2016-11-27 09:48:16 +01:00
Leo Famulari
b46cefc954
gnu: libsodium: Update to 1.0.11. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.11.
 2016-11-26 20:48:34 -05:00
Tobias Geerinckx-Rice
d32f4800d6
gnu: libgphoto2: Add XML support. 
* gnu/packages/photo.scm (libgphoto2)[inputs]: Add libxml2.
 2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice
9dcc9bbf3b
gnu: gphoto2: Update to 2.5.10. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.10.
 2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice
35c0ad4448
gnu: libgphoto2: Update to 2.5.10. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.10.
 2016-11-27 01:43:39 +01:00
Toni Reina
c3e2a2471c
gnu: Add Mozilla Fira Mono font. 
* gnu/packages/fonts.scm (font-fira-mono): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-26 23:21:37 +01:00
Leo Famulari
cd65d600ac
gnu: cyrus-sasl: Fix CVE-2013-4122. 
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field.
(cyrus-sasl/fixed): New variable.
[source]: Use patch.
 2016-11-26 16:21:02 -05:00
Efraim Flashner
439a2f62ce
gnu: ffmpeg: Update to 3.2.1. 
* gnu/packages/video.scm (ffmpeg): Update to 3.2.1.
 2016-11-26 22:53:13 +02:00
Leo Famulari
9e46245b89
gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues. 
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good): Use them.
 2016-11-26 14:27:24 -05:00
Leo Famulari
cf3678df6e
gnu: psyclpc: Update comment. 
This is a followup to commit eaa45301f4.

* gnu/packages/messaging.scm (psyclpc): Update comment.
 2016-11-26 13:36:51 -05:00
ng0
ebfc2ecc3c
gnu: Move content of (gnu packages psyc) into (gnu packages messaging). 
* gnu/packages/psyc.scm (perl-net-psyc, libpsyc, psyclpc): Move this ...
* gnu/packages/messaging.scm (perl-net-psyc, libpsyc, psyclpc): ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove psyc.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-26 13:23:46 -05:00
ng0
eaa45301f4
gnu: psyclpc: Upgrade to 20160821-2.61cf9aa. 
This makes the package reproducible.

* gnu/packages/psyc.scm (psyclpc): Upgrade to 20160821-2.61cf9aa.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-26 13:23:46 -05:00
Danny Milosavljevic
c6c80104ab
gnu: python-flask: Update to 0.11.1. 
* gnu/packages/python.scm (python-flask): Update to 0.11.1.
[native-inputs]: Add python-click.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 16:35:07 +01:00
Danny Milosavljevic
61684de287
gnu: python-pyopenssl: Update to 16.2.0. 
* gnu/packages/python.scm (python-pyopenssl): Update to 16.2.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 16:35:07 +01:00
Danny Milosavljevic
b2e6e150aa
gnu: python-simplejson: Update to 3.10.0. 
* gnu/packages/python.scm (python-simplejson): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 16:35:07 +01:00
ng0
faa29e4bdb
gnu: Add mumble. 
* gnu/packages/telephony.scm (mumble): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 12:32:22 +01:00
Marius Bakke
4f55441fe3
gnu: transmission: Update to 2.92. 
* gnu/packages/bittorrent.scm (transmission): Update to 2.92.
[inputs]: Add cyrus-sasl.
 2016-11-26 12:32:01 +01:00
Ben Woodcroft
5e0a0f4226
gnu: roary: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
 2016-11-26 20:15:39 +10:00
Ben Woodcroft
31a9d653ad
gnu: Add proteinortho. 
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
 2016-11-26 20:15:37 +10:00
Julien Lepiller
d3eff97afd
gnu: Add python-polib. 
* gnu/packages/python.scm (python-polib, python2-polib): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 10:29:29 +01:00
Leo Famulari
53d892dd92
gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556]. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
 2016-11-26 00:38:45 -05:00
Leo Famulari
0959478c72
gnu: Add missing module import to (gnu packages ldc). 
This is a followup to commit e44b511298.

* gnu/packages/ldc.scm: Import (gnu packages python).
 2016-11-25 23:18:29 -05:00
Danny Milosavljevic
e44b511298
gnu: ldc: Update to 0.17.2. 
* gnu/packages/ldc.scm (ldc): Update to 0.17.2.
* gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-25 23:54:51 +01:00
Ludovic Courtès
6634180f9e
gnu: guile-ssh: Update to 0.10.2. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2.
[home-page]: Update.
[source]: Use the 'url-fetch' method and a GitHub generated
tarball.
[arguments] <autoreconf>: Remove now unneeded 'chmod' call.
 2016-11-25 23:44:20 +01:00
Ricardo Wurmus
7276b5604d
gnu: hydrogen: Update to 0.9.7. 
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
 2016-11-25 21:44:16 +01:00
Leo Famulari
c415f76302
gnu: python-betamax: Fix typo. 
* gnu/packages/python.scm (python-betamax): Fix typo.
 2016-11-25 11:31:43 -05:00
Leo Famulari
de32aa74b4
Merge branch 'master' into python-build-system 2016-11-25 11:20:21 -05:00
Tobias Geerinckx-Rice
d66cbd1adc
gnu: btrfs-progs: Update to 4.8.4. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
 2016-11-25 17:00:51 +01:00
Tobias Geerinckx-Rice
fc89cb691d
gnu: lz4: Update to 1.7.4.2. 
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
 2016-11-25 16:31:20 +01:00
Tobias Geerinckx-Rice
dead1067c3
gnu: hplip: Update to 3.16.11. 
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
 2016-11-25 16:31:10 +01:00
Ricardo Wurmus
aaaf8b3844
gnu: qtractor: Update to 0.8.0. 
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
 2016-11-25 13:08:06 +01:00
Alex Kost
1e34721435
gnu: qemu: Install all required info files. 
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase
to find all info files (including "*.info-N").
 2016-11-25 16:09:22 +03:00
Theodoros Foradis
8f528bd442
gnu: Add kicad-library. 
* gnu/packages/engineering.scm (kicad-library): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:11 -05:00
Theodoros Foradis
befc9ff643
gnu: Add kicad. 
* gnu/packages/engineering.scm (kicad): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:11 -05:00
Theodoros Foradis
b353c7d201
gnu: Add python2-wxpython. 
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:10 -05:00