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Author SHA1 Message Date
Efraim Flashner
2604ecb3a9
gnu: smithwaterman: Update to 0.0.0-2.2610e25. 
* gnu/packages/bioinformatics.scm (smithwaterman): Update to 0.0.0-2.2610e25.
[arguments]: Add make-flags to build static library. Adjust custom
'install phase to install static library.
 2020-01-09 14:30:38 +02:00
Efraim Flashner
0ab7f6c5f4
gnu: vcflib: Update to 1.0.1. 
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.1.
[source]: Download using url-fetch.
[native-inputs]: Sort alphabetically. Move perl, python ...
[inputs]: ... to here.
[arguments]: Add make-flags. Update custom 'build phase.

(tabixpp-freebayes): Remove variable.
(freebayes)[native-inputs]: Use tabixpp-source over tabixpp-freebayes.
 2020-01-09 14:30:38 +02:00
Efraim Flashner
2e3efa6e55
gnu: fastahack: Update to 1.0.0. 
* gnu/packages/bioinformatics.scm (fastahack): Update to 1.0.0.
 2020-01-09 14:30:38 +02:00
Efraim Flashner
de933b71ee
gnu: Add intervaltree. 
* gnu/packages/bioinformatics.scm (intervaltree): New variable.
(vcflib, freebayes)[native-inputs]: Use packaged intervaltree's source.
 2020-01-09 14:30:38 +02:00
Efraim Flashner
612d6a8e5b
gnu: tabixpp: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.0.
[source]: Add snippet to remove vendored library.
[arguments]: Adjust custom 'build phase to fix INCLUDES.
 2020-01-09 14:30:37 +02:00
Efraim Flashner
2673620f24
gnu: bwa: Install static library. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Install static
library.
 2020-01-09 14:30:34 +02:00
Pierre Neidhardt
1e3bbd90e4
gnu: emacs-cyberpunk-theme: Update to 1.21. 
* gnu/packages/emacs-xyz.scm (emacs-cyberpunk-theme): Update to 1.21.
 2020-01-09 12:07:02 +01:00
Pierre Neidhardt
a9e70dc5a6
gnu: emacs-helm-org: Update to 20191229. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org): Update to 20191229.
 2020-01-09 11:27:25 +01:00
Vagrant Cascadian
e39fbd8890
gnu: u-boot-2019.10: Remove obsolete version. 
* gnu/packages/bootloaders (u-boot-2019.10): Remove variable.
  (u-boot-firefly-rk3399): Use default u-boot version.
  (u-boot-rockpro64-rk3399): Use default u-boot version.
  (u-boot-rock64-rk3328): Use default u-boot version.
  [arguments]: Remove add-u-boot-itb phase.
 2020-01-08 22:24:22 -08:00
Vagrant Cascadian
634b0e28de
gnu: u-boot: Update to 2020.01. 
* gnu/packages/bootloaders (u-boot): Update to 2020.01.
  [source]: Remove patch u-boot-fix-mkimage-header-verification.
  [native-inputs]: Update to use python 3 and add perl.
  (u-boot-tools)[configure]: Use tools-only_defconfig.
  [arguments]: Update phase updating python-coverage to work with python 3.
  Drop obsolete substitution for test_ofplatdata.
  Disable code coverage tests and binman tests.
* gnu/packages/patches/u-boot-fix-mkimage-header-verification.patch: Remove file.
* gnu/local.mk [dist_patch_DATA]: Update accordingly.
 2020-01-08 22:24:20 -08:00
Vagrant Cascadian
a1fd8c5dee
gnu: arm-trusted-firmware: Update to 2.2. 
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.2.
  [source]: Update URL.
  [homepage]: Update URL.
* gnu/packages/patches/arm-trusted-firmware-optional-bin-generation.patch:
  Remove patch.
* gnu/packages/patches/arm-trusted-firmware-rockchip-disable-binary.patch:
  Remove patch.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
 2020-01-08 22:24:17 -08:00
Oleg Pykhalov
fa01e10da2
gnu: system-config-printer: Update to 1.5.12. 
* gnu/packages/gnome.scm (system-config-printer): Update to 1.5.12.
 2020-01-09 05:00:14 +03:00
Oleg Pykhalov
baa195dde4
gnu: sysstat: Update to 12.3.1. 
* gnu/packages/linux.scm (sysstat): Update to 12.3.1.
 2020-01-09 05:00:14 +03:00
Oleg Pykhalov
67f9f57899
gnu: streamlink: Update to 1.3.0. 
* gnu/packages/video.scm (streamlink): Update to 1.3.0.
[source]: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove this.
 2020-01-09 04:59:59 +03:00
Oleg Pykhalov
3d4bf40071
gnu: tigervnc-client: Update to 1.10.1. 
* gnu/packages/tigervnc.scm (tigervnc-client): Update to 1.10.1.
(tigervnc-server): Update to 1.10.1.
 2020-01-09 04:56:01 +03:00
Oleg Pykhalov
076fe8462a
gnu: teeworlds: Fix install phase on i386 architecture. 
* gnu/packages/games.scm (teeworlds)[arguments]: Fix install phase on i386
architecture.
 2020-01-09 04:56:01 +03:00
Tobias Geerinckx-Rice
d5971d667b
gnu: font-iosevka: Update to 2.3.3. 
* gnu/packages/fonts.scm (font-iosevka): Update to 2.3.3.
 2020-01-09 01:46:30 +01:00
Tobias Geerinckx-Rice
7c3c6f3a15
gnu: font-comic-neue: Add a note about versions. 
* gnu/packages/fonts.scm (font-comic-neue): Add a comment about the
‘v2.4’ tag.
 2020-01-09 01:46:30 +01:00
Tobias Geerinckx-Rice
fb7e50bdb4
gnu: font-inconsolata: Use HTTPS home page. 
* gnu/packages/fonts.scm (font-inconsolata)[home-page]: Use HTTPS.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
901f2607c9
gnu: font-inconsolata: Update to 3.000. 
* gnu/packages/fonts.scm (font-inconsolata): Update to 3.000.
[source]: Fetch from the author's new repository.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
57680360da
gnu: font-ibm-plex: Update to 4.0.2. 
* gnu/packages/fonts.scm (font-ibm-plex): Update to 4.0.2.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
7ac600927b
gnu: font-gnu-unifont: Update to 12.1.04. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.1.04.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
3fd67ec610
gnu: font-terminus: Update to 4.48. 
* gnu/packages/fonts.scm (font-terminus): Update to 4.48.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
5dc8a3ad39
gnu: font-lato: Update version number to 2.015. 
Both the README and the Web site identify this as version 2.015.

* gnu/packages/fonts.scm (font-lato)[version]: Correct.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
789a39a82c
gnu: mate-terminal: Update to 1.23.0. 
* gnu/packages/mate.scm (mate-terminal): Update to 1.23.0.
 2020-01-09 01:46:29 +01:00
Tobias Geerinckx-Rice
30bbe72db3
gnu: mate-terminal: Don't use NAME in source URI. 
* gnu/packages/mate.scm (mate-terminal)[source]: Hard-code NAME.
 2020-01-09 01:46:28 +01:00
Oleg Pykhalov
8f6b6cb822
gnu: sdl2-image: Update to 2.0.5. 
* gnu/packages/sdl.scm (sdl2-image): Update to 2.0.5.
 2020-01-09 03:13:35 +03:00
Oleg Pykhalov
db7040935f
gnu: s6-rc: Update to 0.5.1.1. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.1.
 2020-01-09 03:05:02 +03:00
Oleg Pykhalov
dd0e9335dc
gnu: s6-portable-utils: Update to 2.2.2.1. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.1.
 2020-01-09 03:04:13 +03:00
Oleg Pykhalov
e262a5a7e0
gnu: s6-networking: Update to 2.3.1.1. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.1.
 2020-01-09 03:03:16 +03:00
Oleg Pykhalov
e37a3ac0bd
gnu: s6-linux-utils: Update to 2.5.1.1. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.1.
 2020-01-09 03:02:29 +03:00
Oleg Pykhalov
c1eab4a2a9
gnu: s6-linux-init: Update to 1.0.3.1. 
* gnu/packages/skarnet.scm (s6-linux-init)[version]: Update to 1.0.3.1.
[inputs]: Add execline and s6.
[arguments]: Add '--with-lib=' for execline and s6.
 2020-01-09 02:59:51 +03:00
Oleg Pykhalov
2266eecfae
gnu: s6-dns: Update to 2.3.1.1. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.1.1.
 2020-01-09 02:55:00 +03:00
Oleg Pykhalov
20d812fac4
gnu: skalibs: Update to 2.9.1.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.9.1.0.
 2020-01-09 02:54:57 +03:00
Oleg Pykhalov
64c1e6fe4a
gnu: abiword: Update to 3.0.4. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.4.
[source](patches): Remove "abiword-black-drawing-with-gtk322.patch" patch.
Delete merged to upstream patch hunks in "abiword-explictly-cast-bools.patch"
patch.
* gnu/packages/patches/abiword-black-drawing-with-gtk322.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove this.
 2020-01-09 02:40:25 +03:00
Oleg Pykhalov
9a1bfd68a9
gnu: emacs-treemacs: Refactor "install-data" phase. 
* gnu/packages/emacs-xyz.scm (emacs-treemacs)[arguments]: Refactor
"install-data" phase.
 2020-01-09 02:40:25 +03:00
Marius Bakke
60a366ec7a
gnu: util-linux: Rename udev variant. 
Some packages propagate util-linux, so make sure that that manifests and
similar choose the same version to avoid conflicts.

* gnu/packages/linux.scm (util-linux)[properties]: Remove.
(util-linux+udev)[name]: Set to "util-linux-with-udev".
[properties]: Remove.
 2020-01-09 00:13:50 +01:00
Ricardo Wurmus
907eeac2e7
services: nfs: Add nfs-service-type. 
* gnu/services/nfs.scm (<nfs-configuration>): New record.
(nfs-configuration, nfs-configuration?, nfs-configuration-nfs-utils,
nfs-configuration-nfs-version, nfs-configuration-exports,
nfs-configuration-rpcmountd-port, nfs-configuration-rpcstatd-port,
nfs-configuration-rpcbind, nfs-configuration-idmap-domain,
nfs-configuration-nfsd-port, nfs-configuration-nfsd-threads,
nfs-configuration-pipefs-directory, nfs-configuration-debug,
nfs-shepherd-services): New procedures.
(nfs-service-type): New variable.
* doc/guix.texi (Network File System): Document it.
* gnu/tests/nfs.scm (%test-nfs-server): New variable.
(%base-os): Use default value of rpcbind-service-type.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
a6bdca6b9b
services: nfs: Allow gss-service-type to be extended. 
* gnu/services/nfs.scm (gss-service-type): Rewrite using SERVICE-TYPE to add
ability to extend the service.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
2a23942e3f
services: nfs: Add verbosity control to idmap-service-type. 
* gnu/services/nfs.scm (<idmap-configuration>)[verbosity]: New field.
(idmap-configuration-verbosity): New procedure.
(idmap-service-type): Use it.
* doc/guix.texi (Network File System): Document it.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
af32ea3583
services: nfs: Allow idmap-service-type to be extended. 
* gnu/services/nfs.scm (idmap-service-type): Rewrite using SERVICE-TYPE to add
ability to extend the service.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
5d4ba49891
services: nfs: Fix indentation and typo. 
* gnu/services/nfs.scm (<gss-configuration>, <idmap-configuration>): Fix
indentation.
(<idmap-configuration>): Rename accessor for NFS-UTILS field to
IDMAP-CONFIGURATION-NFS-UTILS.
(idmap-service-type): Use IDMAP-CONFIGURATION-NFS-UTILS.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
25c8c8cd4f
services: nfs: Allow pipefs-service-type to be extended. 
* gnu/services/nfs.scm (pipefs-service-type): Rewrite using SERVICE-TYPE to
add ability to extend the service.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
ba1808d5e7
services: nfs: Allow rpcbind-service-type to be extended. 
* gnu/services/nfs.scm (rpcbind-service-type): Rewrite using SERVICE-TYPE to
add ability to extend the service.
 2020-01-08 23:56:16 +01:00
Ricardo Wurmus
981ce38937
services: nfs: Fix name of package variable. 
* gnu/services/nfs.scm (rpcbind-service-type): Correct name from nfs-utils to
rpcbind.
 2020-01-08 23:56:11 +01:00
Ludovic Courtès
62b9d3d4d5
git-authenticate: Add daviwil to the list of committers. 
This is a followup to a587bb23b7, first
commit signed by daviwil.

* build-aux/git-authenticate.scm (%committers): Add "daviwil".
 2020-01-08 23:34:18 +01:00
Ludovic Courtès
984efa2b6a
build-system/clojure: Provide only the right modules in scope. 
Previously, we used to have a whole bunch of (guix build *-build-system)
modules in scope, which, for example, meant that '%standard-phases' was
clashing.  This change clarifies it.

* guix/build-system/clojure.scm (%default-modules): New variable.
(clojure-build): Change the default value of #:modules and that of
 #:phases.
 2020-01-08 23:21:14 +01:00
Ludovic Courtès
639e641cdf
gnu: Add clojure-tools-cli. 
* gnu/packages/clojure.scm (clojure-tools-cli): New variable.
 2020-01-08 23:21:14 +01:00
Marius Bakke
01bb039e7b
system: Use the udev-enabled util-linux variant. 
Fixes <https://bugs.gnu.org/37931>.
Reported by Bengt Richter <bokr@bokr.com>.

* gnu/system.scm (%base-packages): Change from UTIL-LINUX to UTIL-LINUX+UDEV.
 2020-01-08 20:04:12 +01:00
Marius Bakke
71e0f1e9ad
gnu: util-linux: Add variant with udev support. 
* gnu/packages/linux.scm (util-linux)[properties]: New field.
(util-linux+udev): New public variable.
 2020-01-08 20:04:12 +01:00