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Author SHA1 Message Date
Ludovic Courtès
8c8e108978
gnu: hwloc: Update to 2.1.0. 
* gnu/packages/mpi.scm (hwloc-2.0): Rename to...
(hwloc-2): ... this.  Update to 2.1.0
(hwloc-2.0): Define as deprecated.
* gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
 2019-11-15 17:52:45 +01:00
Ludovic Courtès
52cd164aad
gnu: slurm: Build shared libraries only. 
* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
 2019-11-15 17:52:45 +01:00
Ludovic Courtès
7c96befa52
gnu: slurm: Update to 19.05.3-2. 
* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2.
[source](snippet): Keep "contribs/mpi" and its reference in
'Makefile.am'.
[inputs]: Remove OPENSSL.
[arguments]: Remove "--with-ssl".  Add 'install-libpmi' phase.
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
c1ea4c0793
gnu: Add Intel MPI Benchmarks. 
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
e68f954eb3
gnu: rdma-core: Update to 26.0. 
* gnu/packages/linux.scm (rdma-core): Update to 26.0.
[arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags.
[native-inputs]: Add PYTHON-DOCUTILS.
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
2b14c60d38
gnu: rdma-core: Use the "write" ioctl mode. 
* gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write"
to #:configure-flags.
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
eaa52b5baa
gnu: openmpi: Pass explicit "--with-*" configure flags. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx",
"--with-psm", and "--with-psm2".
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
3b09bb191c
gnu: ucx: Do not install static libraries. 
* gnu/packages/fabric-management.scm (ucx)[arguments]: Pass
"--disable-static".
 2019-11-15 17:52:44 +01:00
Ludovic Courtès
b35f621e45
gnu: ucx: Enable InfiniBand support through Verbs. 
Until now, InfiniBand support was missing, as reported by "ucx_info -d"
on a machine with InfiniBand networking.

* gnu/packages/fabric-management.scm (ucx)[arguments]: Build with
"--with-verbs".
 2019-11-15 17:52:44 +01:00
Kyle Meyer
f3560c626d
gnu: git-annex: Update to 7.20191114. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191114.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-11-15 14:48:32 +01:00
Pierre Langlois
bcdf11d6ff
gnu: rtmidi: Update to 4.0.0. 
* gnu/packages/audio.scm (rtmidi): Update to 4.0.0.
[source]: Download tarball from upstream URL rather than the powertab github
fork.
[arguments]: Enable tests.  Remove 'build and 'install phases and add a new
'noconfigure phase to prevent the bootstrap script from invoking configure.
[home-page]: Update homepage to upstream URL.
* gnu/packages/music.scm (powertabeditor)[arguments]: Add phase that substitutes
the rtmidi #include directive to find the header.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-11-15 14:29:57 +01:00
John Soo
ae5525c591
gnu: freecad: Update to 0.18.4. 
* gnu/packages/engineering.scm (freecad): Update to 0.18.4.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-11-15 13:50:03 +01:00
Mathieu Othacehe
b02a9523b3
gnu: emacs-flycheck-cpplint: Set cpplint path. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-cpplint)[inputs]: Add cpplint.
[arguments]: Add a set-cpplint-path phase to set the path of cpplint.
 2019-11-15 11:04:23 +01:00
Mathieu Othacehe
7e08be71ac
gnu: Add cpplint. 
* gnu/packages/cpp.scm (cpplint): New variable.
 2019-11-15 10:50:19 +01:00
Tobias Geerinckx-Rice
37d473c5d1
gnu: fluidsynth: Update to 2.0.9. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.9.
 2019-11-14 18:01:41 +01:00
Tobias Geerinckx-Rice
daa03aca15
gnu: perl-type-tiny: Update to 1.006000. 
* gnu/packages/perl.scm (perl-type-tiny): Update to 1.006000.
 2019-11-14 18:01:40 +01:00
Tobias Geerinckx-Rice
84748e719d
gnu: msitools: Update to 0.100. 
* gnu/packages/package-management.scm (msitools): Update to 0.100.
 2019-11-14 18:01:40 +01:00
Tobias Geerinckx-Rice
3b27ffec0f
gnu: perl-mail-dkim: Update to 0.58. 
* gnu/packages/mail.scm (perl-mail-dkim): Update to 0.58.
 2019-11-14 18:01:40 +01:00
Jan Nieuwenhuizen
99b340f5ee
gnu: Add m2-planet. 
* gnu/packages/mes.scm (m2-planet): New variable.
 2019-11-14 16:41:55 +01:00
Pierre Neidhardt
5a17042e70
gnu: Add emacs-helm-fish-completion. 
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): New variable.
 2019-11-14 15:39:56 +01:00
Ricardo Wurmus
4dcf32b56b
gnu: r-gprofiler: Update to 0.7.0. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.7.0.
 2019-11-14 10:14:10 +01:00
Ricardo Wurmus
f40fedd8fd
gnu: r-hexbin: Update to 1.28.0. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.0.
 2019-11-14 10:14:10 +01:00
Ricardo Wurmus
d458b2a9e5
gnu: r-r-oo: Update to 1.23.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.23.0.
 2019-11-14 10:14:09 +01:00
Ricardo Wurmus
f046f43bb8
gnu: r-glmnet: Update to 3.0. 
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
[propagated-inputs]: Add r-shape.
 2019-11-14 10:14:09 +01:00
Ricardo Wurmus
3a3ece336b
gnu: r-dt: Update to 0.10. 
* gnu/packages/statistics.scm (r-dt): Update to 0.10.
 2019-11-14 10:14:09 +01:00
Ricardo Wurmus
85d44cf6de
gnu: r-rmarkdown: Update to 1.17. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.17.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
a713371db1
gnu: r-hms: Update to 0.5.2. 
* gnu/packages/statistics.scm (r-hms): Update to 0.5.2.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
2295a17e64
gnu: r-roxygen2: Update to 7.0.0. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.0.
[propagated-inputs]: Add r-rlang.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
30301c0993
gnu: r-r6: Update to 2.4.1. 
* gnu/packages/statistics.scm (r-r6): Update to 2.4.1.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
3d2c2a55fd
gnu: r-testthat: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.0.
[propagated-inputs]: Add r-ellipsis and r-pkgload.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
bc697e716d
gnu: r-knitr: Update to 1.26. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.26.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
44ffff99d3
gnu: r-survival: Update to 3.1-7. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-7.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
f4061505dc
gnu: r-farver: Update to 2.0.1. 
* gnu/packages/cran.scm (r-farver): Update to 2.0.1.
[propagated-inputs]: Remove r-rcpp.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
f72874fe26
gnu: r-ggeffects: Update to 0.13.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.13.0.
[propagated-inputs]: Remove r-scales.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
389f169a7e
gnu: r-learnr: Update to 0.10.0. 
* gnu/packages/cran.scm (r-learnr): Update to 0.10.0.
[propagated-inputs]: Add r-checkmate, r-ellipsis, and r-renv.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
a6412edf29
gnu: r-ggfortify: Update to 0.4.8. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.8.
 2019-11-14 10:14:08 +01:00
Ricardo Wurmus
17c5b6fcce
gnu: r-kernlab: Update to 0.9-29. 
* gnu/packages/cran.scm (r-kernlab): Update to 0.9-29.
 2019-11-14 10:14:07 +01:00
Ricardo Wurmus
e6f1468c93
gnu: r-bookdown: Update to 0.15. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.15.
 2019-11-14 10:14:07 +01:00
Ricardo Wurmus
d4f4b30bbc
gnu: r-future: Update to 1.15.0. 
* gnu/packages/cran.scm (r-future): Update to 1.15.0.
 2019-11-14 10:14:07 +01:00
Ricardo Wurmus
610f2acc7c
gnu: r-rbamtools: Update to 2.16.17. 
* gnu/packages/cran.scm (r-rbamtools): Update to 2.16.17.
 2019-11-14 10:14:06 +01:00
Ricardo Wurmus
e5a06add04
gnu: r-fields: Update to 10.0. 
* gnu/packages/cran.scm (r-fields): Update to 10.0.
 2019-11-14 10:14:06 +01:00
Ricardo Wurmus
b32172cab6
gnu: r-spam: Update to 2.4-0. 
* gnu/packages/cran.scm (r-spam): Update to 2.4-0.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
0da4cb546a
gnu: r-rcppannoy: Update to 0.0.14. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.14.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
5fbd92469d
gnu: r-rvcheck: Update to 0.1.6. 
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.6.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
aa3d1dca60
gnu: r-rootsolve: Update to 1.8.1. 
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.1.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
56b88f6c8d
gnu: r-flextable: Update to 0.5.6. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.6.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
7f4025aa83
gnu: r-officer: Update to 0.3.6. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.6.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
b0fd313e38
gnu: r-rjags: Update to 4-10. 
* gnu/packages/cran.scm (r-rjags): Update to 4-10.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
1ca049273c
gnu: r-ggpubr: Update to 0.2.4. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.4.
 2019-11-14 10:14:05 +01:00
Ricardo Wurmus
383ab0daa2
gnu: r-openxlsx: Update to 4.1.3. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.3.
[propagated-inputs]: Add r-rlang and r-stringi.
 2019-11-14 10:14:05 +01:00