Commit graph

25421 commits

Author SHA1 Message Date
Ricardo Wurmus
8cf7b28ffe
gnu: r-igraph: Update to 1.2.1.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.1.
[inputs]: Add glpk and zlib.
[propagated-inputs]: Remove r-irlba.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
2bcf5fd337
gnu: r-subplex: Update to 1.5-4.
* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
61c868e1f5
gnu: r-shinydashboard: Update to 0.7.0.
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.0.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
4fe0efddfe
gnu: r-htmlwidgets: Update to 1.2.
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.2.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
75a40e89d9
gnu: r-lme4: Update to 1.1-17.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-17.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
30d76d442a
gnu: r-futile-options: Update to 1.0.1.
* gnu/packages/statistics.scm (r-futile-options): Update to 1.0.1.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
4184649940
gnu: r-xml: Update to .
* gnu/packages/statistics.scm (r-xml): Update to .
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
ff91ed7d56
gnu: r-rsqlite: Update to 2.1.0.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.0.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
1aa2ad5b32
gnu: r-survival: Update to 2.42-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.42-3.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
6fa9cf1abb
gnu: r-nlme: Update to 3.1-137.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-137.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
ac6672d539
gnu: r-cluster: Update to 2.0.7-1.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7-1.
2018-04-21 23:07:52 +02:00
Ricardo Wurmus
c43ea99b39
gnu: r-minimal: Update to 3.4.4.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
2018-04-21 23:07:52 +02:00
Efraim Flashner
785f40dfbc
gnu: spindle: Limit supported systems.
* gnu/packages/admin.scm (spindle)[supported-system]: New field.
2018-04-21 23:25:42 +03:00
Efraim Flashner
c80629e7c2
gnu: freefall: Fix compilation error.
* gnu/packages/linux.scm (freefall)[arguments]: Add make-flag to set
CC=gcc.
2018-04-21 23:04:25 +03:00
Tomáš Čech
841f833171
gnu: python-onetimepass: Make python-six a propagated input.
* gnu/packages/python.scm (python-onetimepass)[inputs]: Move python-six from
here...
[propagated-inputs]: ...to here.
2018-04-21 17:37:12 +02:00
Mark H Weaver
0ccb104354
gnu: go-github-com-vitrun-qart-qr: Remove duplicate 'description' field.
* gnu/packages/syncthing.scm (go-github-com-vitrun-qart-qr)[description]:
Remove duplicate 'description' field.
2018-04-21 05:29:53 -04:00
Mark H Weaver
6b2752526b
gnu: uget: Remove duplicate 'native-inputs' field.
* gnu/packages/bittorrent.scm (uget)[native-inputs]: Remove duplicate
field initializer.
2018-04-21 05:29:42 -04:00
Mark H Weaver
3fe49e5015
gnu: linux-libre@4.9: Update to 4.9.95.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.95.
2018-04-21 03:02:57 -04:00
Tomáš Čech
9a58840235
gnu: Add osc.
* gnu/packages/build-tools.scm (osc): New variable.
2018-04-21 08:40:40 +02:00
Tomáš Čech
2f69121808
gnu: Add python-m2crypto, python2-m2crypto.
* gnu/packages/python-crypto.scm (python-m2crypto): New variable.
(python2-m2crypto): New variable.
2018-04-21 08:40:40 +02:00
Tomáš Čech
c596461187
gnu: Add python2-urlgrabber.
* gnu/packages/python-web (python2-urlgrabber): New variable.
2018-04-21 08:40:40 +02:00
Tomáš Čech
15ed90b960
gnu: Add python-onetimepass.
* gnu/packages/python.scm (python-onetimepass): New variable.
2018-04-21 08:33:34 +02:00
Mark H Weaver
b5178b3254
gnu: perl: Hack the replacement perl to think it is version 5.26.1.
Fixes <https://bugs.gnu.org/31216>.

This is a followup to commits 217b8c2e06,
44b98b0002, and
35fbe194c3da264859a5addc661b9fbc2dc8ecc7.

Complications arise when grafting perl unless the version of the replacement
perl matches that of the original.  So, here we add 'perl/fixed', which is
built from the perl-5.26.2 source but hacked to believe it is version 5.26.1.

* gnu/packages/perl.scm (perl)[replacement]: Use perl/fixed, not perl-5.26.2.
(perl-5.26.2): Remove compatibility symlinks.
(perl/fixed): New variable.
2018-04-21 01:17:44 -04:00
Mark H Weaver
5618193694
gnu: perl: Add more compatibility symlinks to the replacement perl.
Fixes <https://bugs.gnu.org/31216>.
Reported by Julien Lepiller <julien@lepiller.eu>.

* gnu/packages/perl.scm (perl-5.26.2)[arguments]: Rename the
'workaround-grafting-version-bug' phase to 'install-compatibility-symlinks'.
Install symlinks in $out/lib/perl5/site_perl/5.26.1 and $out/bin/perl5.26.1,
in addition to $out/lib/perl5/5.26.1.  Simplify the code a bit.
2018-04-20 23:29:14 -04:00
Nicolas Goaziou
1af4212ae4
gnu: emacs-org, emacs-org-contrib: Update version.
* gnu/packages/emacs.scm (emacs-org): Update to 9.1.10.
(emacs-org-contrib): Update to 20180416.
2018-04-20 12:31:28 +02:00
Maxim Cournoyer
582c122e7b
gnu: emacs-sx: Fix byte compilation.
The package would fail building when attempting to create a cache
directory. This has been fixed upstream but not in a tagged release.

* gnu/packages/emacs.scm (emacs-sx): Update to latest git version.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 15:38:32 +05:30
Maxim Cournoyer
9835a71d80
gnu: emacs-esxml: Fix byte compilation.
* gnu/packages/emacs.scm (emacs-esxml)[arguments]: Add fix-sources phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 14:49:26 +05:30
Maxim Cournoyer
62950ec7e9
gnu: Add emacs-kv.
* gnu/packages/emacs.scm (emacs-kv): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 14:49:20 +05:30
Tomáš Čech
9324d92e6a
gnu: lvm2: Enable pkg-config files generation.
* gnu/packages/linux.scm (lvm2)[arguments]: Enable pkg-config files generation
via configure flag.
2018-04-20 10:38:50 +02:00
Tomáš Čech
e60352e453
gnu: Add go-golang-org-x-crypto-ssh-terminal.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ssh-terminal): New variable.
2018-04-20 10:38:31 +02:00
Arun Isaac
5368e67c4e
gnu: emacs-realgud: Update to 1.4.5.
* gnu/packages/emacs.scm (emacs-realgud): Update to 1.4.5.
2018-04-20 13:42:58 +05:30
Maxim Cournoyer
aea388cf36
gnu: emacs-realgud: Fix autogen.sh after EMACSLOADPATH is set.
* gnu/packages/emacs.scm (emacs-realgud)[arguments]: Move the
fix-autogen-script phase to after the set-emacs-load-path phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 13:30:39 +05:30
Mark H Weaver
872bda5de5
gnu: linux-libre: Update to 4.16.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.3.
(%linux-libre-hash): Update hash.
2018-04-19 18:55:23 -04:00
Mark H Weaver
58f427de8a
gnu: linux-libre@4.14: Update to 4.14.35.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.35.
(%linux-libre-4.14-hash): Update hash.
2018-04-19 18:54:25 -04:00
Maxim Cournoyer
652741cf28
gnu: emacs-deferred: Enable tests.
* gnu/packages/emacs.scm (emacs-deferred)[arguments]: Add fix-makefile
phase. Set #:test-command, and enable tests.
[native-inputs]: Add emacs-ert-expectations, emacs-undercover and ert-runner.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 02:09:10 +05:30
Arun Isaac
1848cdfb7d
gnu: emacs-memoize: Update to 1.1.
* gnu/packages/emacs.scm (emacs-memoize): Update to 1.1. Re-indent.
[source]: Switch to release tarball.
[arguments]: Remove "-l" "memoize.el" from #:test-command.
2018-04-20 01:09:46 +05:30
Julien Lepiller
76fa5e042b
gnu: guix: Add po4a input.
* gnu/packages/package-management.scm (guix)[inputs]: Add po4a.
2018-04-19 21:30:49 +02:00
Maxim Cournoyer
9490c411f0
gnu: ert-runner: Adjust ert-runner wrapper to honor EMACSLOADPATH.
* gnu/packages/emacs.scm (ert-runner): Use 'prefix instead of '= for setting
the EMACSLOADPATH environment variable. Reuse the already computed
EMACSLOADPATH for wrap-program. Specify the dependencies directly in the
inputs field.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
Maxim Cournoyer
d1d41db6bb
gnu: Adapt Emacs packages to use the new check phase.
* gnu/packages/emacs.scm (emacs-dash, emacs-s, emacs-string-inflection,
emacs-company, emacs-clojure-mode, emacs-julia-mode, emacs-elfeed,
emacs-memoize, emacs-use-package, emacs-xmlgen, emacs-json-reformat,
emacs-which-key, emacs-ws-butler, emacs-git-messenger, emacs-browse-at-remote,
emacs-evil-quickscope)[arguments]: Add #:tests? and #:test-command arguments
to use the new check phase.
(emacs-json-reformat)[inputs]: Move emacs-dash and emacs-shut-up to ...
[native-inputs]: here. Add ert-runner.
(emacs-company)[arguments]: Refactor fix-bin-dir phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
Maxim Cournoyer
259ed58fef
gnu: emacs-pdf-tools: Fix byte compilation.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Add
emacs-set-emacs-load-path phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
Efraim Flashner
2bb915e679
gnu: u-boot-odroid-c2: Remove variable.
U-boot for this target requires a binary blob to boot correctly.

* gnu/packages/bootloaders.scm (u-boot-odroid-c2): Remove variable.
2018-04-19 21:42:12 +03:00
Marius Bakke
7c16af4646
gnu: python-bcrypt: Move to (gnu packages python-crypto).
* gnu/packages/password-utils.scm (python-bcrypt, python2-bcrypt): Move to ...
* gnu/packages/python-crypto.scm (python-bcrypt, python2-bcrypt): ... here.
* gnu/packages/python.scm: Remove unused (gnu packages password-utils) import.
2018-04-19 18:03:04 +02:00
Leo Famulari
44b98b0002
gnu: Perl: Fix a grafting failure due to a path that includes the package version.
Fixes <https://bugs.gnu.org/31210>.

* gnu/packages/perl.scm (perl-5.26.2): Don't use package/inherit.
[arguments]: Add a 'workaround-grafting-version-bug' phase.
2018-04-19 10:37:17 -04:00
Roel Janssen
d28e5ad23c
gnu: guile-curl: Use invoke.
* gnu/packages/curl.scm (guile-curl): Use invoke instead of system*.
2018-04-19 14:26:35 +02:00
Pierre Neidhardt
b164233851
gnu: Add fortune-mod.
* gnu/packages/games.scm (fortune-mod): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:53:58 +02:00
Pierre Neidhardt
9a3fb60ca3
gnu: Add perl-test-runvalgrind
* gnu/packages/perl-check.scm (perl-test-runvalgrind): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:48:45 +02:00
Pierre Neidhardt
e118a013c8
gnu: Add perl-io-all.
* gnu/packages/perl.scm (perl-io-all): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:48:35 +02:00
Pierre Neidhardt
7234fbcb25
gnu: Add perl-file-readbackwards.
* gnu/packages/perl.scm (perl-file-readbackwards): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:47:44 +02:00
Diego Nicola Barbato
0818c01aef
gnu: libfive: Add snippet, enable tests and remove obsolete phase.
* gnu/packages/engineering.scm (libfive)[source]: Add snippet to
remove bundled catch.
[arguments]: Remove #:tests?.  Add #:test-target.  Remove phase
'add-eigen-to-search-path'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:24:37 +02:00
Rouby Pierre-Antoine
541dac8aee
gnu: Add spindle.
* gnu/packages/admin.scm (spindle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:10:06 +02:00