Commit graph

82328 commits

Author SHA1 Message Date
Ricardo Wurmus
b105655670
gnu: python-scanpy: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.1.
[arguments]: Bulid with flit; update list of broken tests.
[native-inputs]: Add python-flit and python-anndata:source.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus
105d8196be
gnu: Add python-jupyter-server.
* gnu/packages/jupyter.scm (python-jupyter-server): New variable.
2021-08-30 18:29:57 +02:00
Ricardo Wurmus
5766296a16
gnu: Add python-anyio.
* gnu/packages/python-xyz.scm (python-anyio): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
76b5a14ad5
gnu: Add python-pytest-mock-3.
* gnu/packages/check.scm (python-pytest-mock-3): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
c7d5e1a24c
gnu: Add python-pytest-tornasync.
* gnu/packages/python-check.scm (python-pytest-tornasync): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
43a6152432
gnu: Add python-pytest-console-scripts.
* gnu/packages/python-check.scm (python-pytest-console-scripts): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
d84ead8174
gnu: Add python-dna-features-viewer.
* gnu/packages/bioinformatics.scm (python-dna-features-viewer): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
abe1890a57
gnu: Add python-svgutils.
* gnu/packages/python-xyz.scm (python-svgutils): New variable.
2021-08-30 18:29:56 +02:00
Ricardo Wurmus
e85b35070c
gnu: Add python-pybbi.
* gnu/packages/bioinformatics.scm (python-pybbi): New variable.
2021-08-30 18:29:56 +02:00
Leo Prikler
b8926ca617
gnu: wine: Update to 6.16.
* gnu/packages/wine.scm (wine): Update to 6.16.
2021-08-30 18:20:07 +02:00
Denis 'GNUtoo' Carikli
7c3cefde5a
gnu: Add h-client.
* gnu/packages/hardware.scm (h-client): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-08-30 18:20:07 +02:00
Leo Prikler
0732870631
gnu: wine: Update to 6.14.
* gnu/packages/wine.scm (wine): Update to 6.14.
[#:phases]: Patch Makefile to correctly locate ntdll.so.
(wine64)[#:phases]: Likewise.
2021-08-30 17:31:09 +02:00
Xinglu Chen
b12d856da9
gnu: Add ocaml-odoc-parser.
* gnu/packages/ocaml.scm (ocaml-odoc-parser): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30 14:40:18 +02:00
Xinglu Chen
0508622848
build-system: chicken: Add 'egg-uri' procedure.
Once Chicken 6 gets released, we can just adjust the URL in the ‘egg-uri’
procedure, instead of having to change the URL for all the Chicken packages.
Making things a little more future-proof.

* guix/build-system/chicken.scm (egg-uri): New procedure.
* guix/import/egg.scm (egg-source-url): Adjust accordingly.
(egg->guix-package): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-30 14:38:50 +02:00
Ludovic Courtès
99160bc713
gnu: scrot: Update to 1.6.
* gnu/packages/xdisorg.scm (scrot): Update to 1.6.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add IMLIB2.
2021-08-30 14:30:53 +02:00
Ludovic Courtès
b4452ffe9b
build: Build (gnu packages rocm).
This is a followup to df90cb1d5c.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
2021-08-30 14:27:30 +02:00
Ludovic Courtès
1037211d1b
services: hurd-vm: Use the new 'targets' field of <bootloader-configuration>.
* gnu/services/virtualization.scm (%hurd-vm-operating-system): Use
'targets' instead of 'target' for the 'bootloader-configuration' field.
2021-08-30 14:24:14 +02:00
Ludovic Courtès
baf4272df2
bootloader: Report location of the deprecated 'target' field.
This is a followup to 2ca982ff41.

* gnu/bootloader.scm (warn-target-field-deprecation): New macro.
(<bootloader-configuration>)[target]: Add 'sanitize' property.
(%warn-target-field-deprecation): New procedure.
(bootloader-configuration-target): Define using 'define-deprecated'.
(bootloader-configuration-targets): Use
'%bootloader-configuration-target' rather than the deprecated one.
2021-08-30 14:22:35 +02:00
Ludovic Courtès
8e8d85f722
build: Build (gnu system setuid).
This is a followup to 45235e67e4.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
2021-08-30 12:26:03 +02:00
Ludovic Courtès
541e2f9a01
gnu: extra-cmake-modules: Avoid dependency on qtbase when on armhf.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[native-inputs]:
Remove QTBASE-5 on armhf-linux.
[arguments]: Set #:tests? accordingly.
2021-08-30 12:17:02 +02:00
Mathieu Othacehe
f91ae9425b
services: xorg: Delay the xorg-configuration-modules field evaluation.
When building an image with the "system" parameter set to an emulated
architecture, the xorg-configuration-modules field needs to be evaluated once
the %current-system parameter is set, otherwise this parameter is set to the
current host system.

* gnu/services/xorg.scm (<xorg-configuration>)[modules]: Make it a thunked
field.
2021-08-30 10:59:18 +02:00
Jan (janneke) Nieuwenhuizen
8ef38cd1bf
gnu: guile-websocket: Update to 0.1-d17878f6.
* gnu/packages/guile-xyz.scm (guile-websocket)[source]: Update to
0.1-d17878f6.  Use https:// url.
[phases]: Remove "update-guile-version" stage.
[native-inputs]: Add pkg-config.
2021-08-30 07:56:49 +02:00
Pierre Langlois
663c4dc27f
gnu: Add emacs-helm-xref.
* gnu/packages/emacs-xyz.scm (emacs-helm-xref): New variable.
2021-08-29 20:14:06 +01:00
Pierre Langlois
7d5cb45b49
gnu: mu: Update to 1.6.5.
* gnu/packages/mail.scm (mu): Update to 1.6.5.
2021-08-29 20:14:04 +01:00
Mathieu Othacehe
994d8ce394
gnu: shadow: Use the cross-compiled shell at runtime.
Make sure that the executed shell at runtime is the cross-compiled shell and
not the native shell.

* gnu/packages/admin.scm (shadow)[arguments]: Add a set-runtime-shell phase.
[inputs]: Add bash-minimal when cross-compiling.
2021-08-29 18:57:29 +02:00
Oleg Pykhalov
5fdc46a9fe
gnu: Add emacs-hideshowvis.
* gnu/packages/emacs-xyz.scm (emacs-hideshowvis): New variable.
2021-08-29 17:34:43 +03:00
Brice Waegeneire
8fe8f53454
gnu: rofi: Update to 1.7.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.7.0.
  [inputs]: Add xcb-util-cursor.
  [source]<origin>, [home-page]: Change URL to the redirected one.
2021-08-29 16:05:47 +02:00
Maxime Devos
7256d9d204
isc-dhcp: Fix dhclient-script wrapper when cross-compiling.
This causes many rebuilds, but only when cross-compiling.
This should unbreak Internet access on cross-compiled pinebook
images.

Reported-By: Guest4977 (on IRC)

* gnu/gnunet/packages/admin.scm
  (isc-dhcp)[arguments]<#:phases>{post-install}: Use the
  cross-compiled bash when cross-compiling. Work-around
  <https://issues.guix.gnu.org/49290>.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-08-29 11:57:47 +02:00
Efraim Flashner
9734da36f2
services: Remove i486 qemu target.
The i486 target has been removed from qemu since at least 5.2.0.

* gnu/services/virtualization.scm (%i486): Remove variable.
(%qemu-platforms): Remove it.
2021-08-29 09:50:11 +03:00
Maxim Cournoyer
8ad6624b96
services: base: Honor file-system-create-mount-point? at all times.
Fixes <https://issues.guix.gnu.org/40158>.

* gnu/services/base.scm (file-system-shepherd-service): Update doc.  Return a
shepherd service for the mount point when either MOUNT? or CREATE? is true.
[start]: Only mount when MOUNT? is true.
(file-system-shepherd-services): Also consider file systems with
create-mount-point? set to #t.
2021-08-29 01:31:52 -04:00
Maxim Cournoyer
0bc5448cf1
gnu: python-pytest-django: Update to 4.4.0.
* gnu/packages/django.scm (python-pytest-django): Update to 4.4.0.
[tests?]: Disable test suite.
[native-inputs]: Replace python-pytest-xdist by python-pytest-xdist-next.
[home-page]: Update home page.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer
352f72ac02
gnu: python-django: Update to 3.2.6.
* gnu/packages/django.scm (python-django): Update to 3.2.6.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer
019bf96300
gnu: ansible: Update to 4.4.0.
* gnu/packages/admin.scm (ansible): Update to 4.4.0.
[native-inputs]: Remove field.
[inputs]: Likewise.
[arguments]: Likewise.
[propagated-inputs]: New field.
[native-search-paths]: New search path.
[description]: Update description.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer
83bf3c63da
gnu: Add ansible-core.
* gnu/packages/admin.scm (ansible-core): New variable.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer
fa4c3deb8b
gnu: Add python-pytest-xdist-next.
* gnu/packages/check.scm (python-pytest-xdist-next): New variable.
2021-08-29 01:05:29 -04:00
Maxim Cournoyer
9482c5ad03
gnu: python-pytest-xdist: Fix by downgrading to 1.34.0, run test suite.
Commit ed72e55831 updated the package to 2.1.0, but this version doesn't work
with Pytest 5, the version currently used in Guix.  Downgrade to the last
version that is compatible with Pytest 5.

* gnu/packages/check.scm (python-pytest-xdist): Downgrade to 1.34.0, with a
comment explaining why.  Strip trailing #t.
[source]: Remove origin modules and snippet field, no longer necessary.
[phases]{check}: Override to run the test suite.
[propagated-inputs]: Remove python-py and add python-pytest-forked.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer
48461816e4
gnu: python-pytest-mock: Update to 3.6.1 and run test suite.
* gnu/packages/check.scm (python-pytest-mock): Update to 3.6.1.
[phases]{check}: Override to run test suite.
[propagated-inputs]: Add python-pytest-asyncio.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer
b1ef8b410c
gnu: python-pytest-asyncio: Enable tests and patch for Python 3.8.
* gnu/packages/patches/python-pytest-asyncio-python-3.8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/check.scm (python-pytest-asyncio)
[source]: Fetch from git and apply above patch.
[phases]: Override the check phase, enabling tests.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer
0a2c8b10fc
gnu: python-pytest-forked: Update to 1.3.0 and run test suite.
* gnu/packages/check.scm (python-pytest-forked)[origin]: Use git.
[phases]{disable-setuptools-scm}: New phase.
{check}: Override phase.
[propagated-inputs]: Remove field.
[native-inputs]: Remove ??? and add python-pytest-bootstrap.
[home-page]: Fix indentation.
[synopsis]: Update.
[description]: Expound.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer
bece6dd70d
gnu: python-py-next: Update to 1.10.0.
* gnu/packages/python-xyz.scm (python-py-next): Update to 1.10.0.
2021-08-29 01:05:28 -04:00
Maxim Cournoyer
399a844aad
gnu: python-mock: Update description.
* gnu/packages/check.scm (python-mock)
[description]: Mention this library is now part of Python 3.3 onward.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
3d0fd83f24
gnu: python-rope: Update to 0.19.0 and remove python2-rope.
* gnu/packages/python-xyz.scm (python-rope): Update to 0.19.0.
[source]: Fix indentation.
[arguments]: Remove.
[native-inputs]: Remove.
[license]: Correct license.
(python2-rope): Delete variable.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
1d94000d87
gnu: python-execnet: Update to 1.9.0 and enable tests.
* gnu/packages/patches/python-execnet-read-only-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-execnet): Update to 1.9.0.
[source]: Fix indentation.
[arguments]: Enable tests, replacing the default check phase.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
66071cd85e
gnu: python-pytest-6: Update to 6.2.4 and propagate iniconfig.
* gnu/packages/check.scm (python-pytest-6): Update to 6.2.4.  Fix typo.
Removing trailing #t.
[native-inputs]: Delete the extraneous python-mock input.
Move python-iniconfig to...
[propagated-inputs]: ... here.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
97a675df1b
gnu: Add python-pyspnego.
* gnu/packages/python-xyz.scm (python-pyspnego): New variable.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
5abe149b4e
gnu: Add python-ncclient.
* gnu/packages/python-xyz.scm (python-ncclient): New variable.
2021-08-29 01:05:27 -04:00
Maxim Cournoyer
165cbdfdc1
gnu: Add python-resolvelib-0.5.
* gnu/packages/python-xyz.scm (python-resolvelib-0.5): New variable.
2021-08-29 01:05:26 -04:00
Maxim Cournoyer
afcbaadac5
gnu: Add python-resolvelib.
* gnu/packages/python-xyz.scm (python-resolvelib): New variable.
2021-08-29 01:05:26 -04:00
Maxim Cournoyer
bf99f80a16
gnu: Add python-commentjson.
* gnu/packages/python-xyz.scm (python-commentjson): New variable.
2021-08-29 01:05:26 -04:00
Maxim Cournoyer
da4e409483
Migrate to the new 'targets' field of bootloader-configuration.
The old 'target' field is deprecated; adjust the sources to use the new
'targets' one instead.

* doc/guix-cookbook.texi<target>: Replace by 'targets'.
* gnu/bootloader/grub.scm: Likewise.
* gnu/installer/parted.scm: Likewise.
* gnu/machine/digital-ocean.scm: Likewise.
* gnu/system/examples/asus-c201.tmpl: Likewise
* gnu/system/examples/bare-bones.tmpl: Likewise
* gnu/system/examples/bare-hurd.tmpl: Likewise
* gnu/system/examples/beaglebone-black.tmpl: Likewise
* gnu/system/examples/desktop.tmpl: Likewise
* gnu/system/examples/docker-image.tmpl: Likewise
* gnu/system/examples/lightweight-desktop.tmpl: Likewise
* gnu/system/examples/vm-image.tmpl: Likewise
* gnu/system/examples/yggdrasil.tmpl: Likewise
* gnu/system/hurd.scm: Likewise
* gnu/system/images/hurd.scm: Likewise
* gnu/system/images/novena.scm: Likewise
* gnu/system/images/pine64.scm: Likewise
* gnu/system/images/pinebook-pro.scm: Likewise
* gnu/system/images/rock64.scm: Likewise
* gnu/system/install.scm: Likewise
* gnu/system/vm.scm: Likewise
* gnu/tests.scm: Likewise
* gnu/tests/ganeti.scm: Likewise
* gnu/tests/install.scm: Likewise
* gnu/tests/nfs.scm: Likewise
* gnu/tests/telephony.scm: Likewise
* tests/boot-parameters.scm: Likewise
* tests/system.scm: Likewise
2021-08-29 01:05:26 -04:00