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Author SHA1 Message Date
Liliana Marie Prikler
9be5f88e18
gnu: gnome-maps: Properly wrap GI_TYPELIB_PATH. 
This fixes a bug reported by pkill9 and tschilptschilp23 in IRC.
See <http://logs.guix.gnu.org/guix/2022-10-01.log#031053> and
<http://logs.guix.gnu.org/guix/2022-10-05.log#214334>.
It does so by using a snippet that's also applied in gnome-shell.

* gnu/packages/geo.scm (gnome-maps)[#:phases]: Remove ‘patch-dbus-service’.
Update ‘wrap’ so that it uses GJS-specific wrapping code rather than
wrap-program.
 2022-10-05 22:05:43 +02:00
Liliana Marie Prikler
ccbeb3fde6
gnu: gnome-maps: Delete trailing space. 
* gnu/packages/geo.scm (gnome-maps)[inputs]: Delete trailing spaces.
 2022-10-05 21:45:18 +02:00
Liliana Marie Prikler
7ddba7bf66
gnu: gnome-maps: Update to 43.0. 
* gnu/packages/geo.scm (gnome-maps): Update to 43.0.
[arguments]<#:meson>: Use meson-0.63.
<#:phases>: Replace ‘skip-gtk-update-icon-cache’ with
‘skip-cache-and-database-updates’.  Update accordingly.
 2022-10-05 21:44:00 +02:00
Ricardo Wurmus
fd6cd9de86
gnu: Add megahit. 
* gnu/packages/bioinformatics.scm (megahit): New variable.
 2022-10-05 17:59:04 +02:00
Ricardo Wurmus
be1d561f1a
gnu: Add cd-hit-auxtools. 
* gnu/packages/bioinformatics.scm (cd-hit-auxtools): New variable.
 2022-10-05 14:28:24 +02:00
Ricardo Wurmus
3f627bf56b
gnu: cd-hit: Update to 4.8.1. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1.
[arguments]: Do not use quasiquote; remove trailing #T from build phases.
[inputs]: Add zlib.
 2022-10-05 13:47:57 +02:00
Ricardo Wurmus
9ed65e6af7
gnu: kaiju: Update to 1.9.0. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.9.0.
[arguments]: Use gexps; wrap scripts in install phase.
[inputs]: Add bzip2, coreutils, curl, gawk, guile-3.0, gzip,
python-wrapper, tar, and wget.
 2022-10-04 23:10:56 +02:00
Liliana Marie Prikler
a96ebe47b0
gnu: ibus: Build with GTK4. 
* gnu/packages/ibus.scm (ibus)[arguments]: Add “--enable-gtk4”.
[inputs]: Add gtk and pango-next.
 2022-10-04 20:40:46 +02:00
Liliana Marie Prikler
c264265abd
gnu: sdl2: Use ibus-minimal instead of ibus. 
This prevents an input cycle between GTK -> ffmpeg -> sdl2 -> ibus -> GTK.

* gnu/packages/sdl.scm (sdl2)[inputs]: Replace ibus with ibus-minimal.
 2022-10-04 20:40:46 +02:00
Liliana Marie Prikler
ef53c075a1
gnu: Add ibus-minimal. 
* gnu/packages/ibus.scm (ibus-minimal): New variable.
(ibus): Inherit from ibus-minimal.
 2022-10-04 20:40:45 +02:00
Jonathan Brielmaier
1c821a3a63
gnu: icedove: Update to 102.3.1 [security fixes]. 
Fixes CVE-2022-39236, CVE-2022-39249, CVE-2022-39250 and CVE-2022-39251.

* gnu/packages/gnuzilla.scm (icedove): Update to 102.3.1.
 2022-10-04 20:36:24 +02:00
Ludovic Courtès
ecee392ef1
gnu: eog-plugins: Fix source URL. 
The incorrect URL was introduced in
d6d861c615.

* gnu/packages/gnome.scm (eog-plugins)[source]: Change directory in URL.
 2022-10-04 18:15:36 +02:00
Zzull
58f6b246a6
gnu: Add awscli-2. 
* gnu/packages/python-web.scm (awscli-2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:36 +02:00
Zzull
d7932b731f
gnu: Add python-executor. 
* gnu/packages/python-xyz.scm (python-executor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:36 +02:00
Zzull
0669bf64f7
gnu: Add python-property-manager. 
* gnu/packages/python-xyz.scm (python-property-manager): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
f83622f17d
services: anonip: Bail out when the input is not a FIFO. 
* gnu/services/web.scm (anonip-shepherd-service)[start]: Accept zero
arguments.  Define 'spawn'.  Print a message and return #f when #$INPUT
does not denote a FIFO.
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
5bc4b8e8e3
channels: Warn about missing introductions. 
* guix/channels.scm (latest-channel-instance): Warn when CHANNEL has no
introduction and CHECKOUT contains '.guix-authorizations'.
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
ae1af5d787
gnu: guix: Update to 17134b9. 
* gnu/packages/package-management.scm (guix): Update to 17134b9.
 2022-10-04 18:15:35 +02:00
( via Guix-patches via
7030f592c6
home: Add home-batsignal-service-type. 
* gnu/home/services/pm.scm (home-batsignal-service-type): New variable.
(home-batsignal-configuration): New record type.
* doc/guix.texi: Document them.
* gnu/local.mk: Add gnu/home/services/pm.scm.
 2022-10-04 17:04:45 +04:00
Andrew Tropin
224fd038f2
doc: Mention network mask in network-route. 
* doc/guix.texi (Networking Setup): Mention network mask in network-route.
 2022-10-04 16:51:22 +04:00
Andrew Tropin
64213a0b66
deploy: Fix error message. 
* guix/scripts/deploy.scm (guix-deploy): Fix error message.
 2022-10-04 16:46:33 +04:00
Timotej Lazar
ba84c8c448
gnu: augustus: Update to 3.2.0. 
* gnu/packages/games.scm (augustus): Update to 3.2.0.
[inputs]: Add expat.
[snippet]: Unbundle it. Drop trailing #t.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
jgart
31e19fd874
gnu: emacs-lsp-mode: Update to 26c4d3e. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
Michael Rohleder
7e9534150b
gnu: emacs-nov-el: Update to 0.4.0 and use gexps. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0.
[arguments]: Use gexps.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
df5a021f66
gnu: emacs-modus-themes: Update to 2.7.1. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
5e8221822e
gnu: emacs-org-mime: Update to 0.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
 2022-10-04 13:37:42 +02:00
kiasoc5
fd7c34f2bf
gnu: Add emacs-circadian. 
* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:41 +02:00
Ricardo Wurmus
17134b9ec1
gnu: r-tximeta: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
94693d1980
gnu: r-bionero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
202fd44ca0
gnu: r-biodb: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
6bf59194a6
gnu: r-basilisk: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
869b1f9f5c
gnu: r-pathview: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
cc719399c9
gnu: r-scran: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1527d2e9df
gnu: r-scuttle: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
d66a466909
gnu: r-hdf5array: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
9af834ad37
gnu: r-biocviews: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
10c006c21d
gnu: r-opencyto: Update to 2.8.4. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
bceed10243
gnu: r-flowstats: Update to 4.8.2. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
eed76ad91a
gnu: r-flowviz: Update to 1.60.2. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
f82d20caae
gnu: r-ggcyto: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
23e42e77d4
gnu: r-rsubread: Update to 2.10.5. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
597106f234
gnu: r-rgadem: Update to 2.44.1. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
 2022-10-03 19:08:07 +02:00