Commit graph

52656 commits

Author SHA1 Message Date
Ricardo Wurmus
827d0fa846
gnu: r-shortread: Update to 1.44.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.
2019-12-27 21:30:21 +01:00
Christopher Baines
abfe3c5aa2
gnu: guix-data-service: Update to 0.0.1-12.f56935a.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-12.f56935a.
2019-12-27 14:47:29 +00:00
Ludovic Courtès
b3011dbbd2
doc: Mention "make authenticate".
* doc/contributing.texi (Building from Git): Add instructions to run
'git verify-commit' and 'make authenticate'.
2019-12-27 13:52:49 +01:00
Ludovic Courtès
787766ed1e
git-authenticate: Keep a local cache of previously-authenticated commits.
A list of already-authenticated commits is kept in
~/.cache/guix/authentication.  This speeds up subsequent "make
authenticate" invocations.

* build-aux/git-authenticate.scm (authenticated-commit-cache-file)
(previously-authenticated-commits, cache-authenticated-commit): New
procedures.
(git-authenticate): Define 'authenticated-commits' and pass it as a
third argument to 'commit-difference'.  Add call to
'cache-authenticated-commit'.  Don't display signing stats when STATS is
null.
2019-12-27 13:52:49 +01:00
Ludovic Courtès
785af04a75
git: 'commit-difference' takes a list of excluded commits.
* guix/git.scm (commit-closure): Add 'visited' optional parameter.
(commit-difference): Add 'excluded' optional parameter; pass second
argument to 'commit-closure'.
* tests/git.scm ("commit-difference, excluded commits"): New test.
2019-12-27 13:52:49 +01:00
Ludovic Courtès
1e43ab2c03
Add 'build-aux/git-authenticate.scm'.
* build-aux/git-authenticate.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
(commit_v1_0_1): New variable.
(authenticate): New target.
2019-12-27 13:52:49 +01:00
Nicolas Goaziou
6ab59cfd27
gnu: emacs-org-contrib: Update to 20191226.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20191226.
2019-12-27 09:44:26 +01:00
Nicolas Goaziou
50257d2764
gnu: emacs-org: Update to 9.3.1.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.1.
2019-12-27 09:42:02 +01:00
Brett Gilio
a9650f1135
gnu: emacs-telega: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4.
[arguments]: Working around imagemagick and svg is no longer needed.
[native-inputs]: Replace emacs-minimal with emacs. This is needed because
bytecompilation requires fringe-bitmap support.
2019-12-26 13:10:37 -06:00
Hartmut Goebel
b291c9570d
gnu: Add ffmpegthumbs.
* gnu/packages/kde-multimedia.scm (ffmpegthumbs): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel
2d11fbcf10
gnu: Add audiocd-kio.
* gnu/packages/kde-multimedia.scm (audiocd-kio): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel
6f936d8740
gnu: Add libkcompactdisc.
* gnu/packages/kde-multimedia.scm (libkcompactdisc): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
ca632dc175
gnu: Add kamoso.
* gnu/packages/kde-multimedia.scm (kamoso): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
abd4d57851
gnu: Add elisa.
* gnu/packages/kde-multimedia.scm (elisa): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
f66c7a5c0b
gnu: Add kwave.
* gnu/packages/kde-multimedia.scm (kwave): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
49d40e60b8
gnu: Add kmplayer.
`guix lint` reports two CVEs, both are unrelated:
- CVE-2018-5200: for vendor "pandora" and some 4.2.2.x version
- CVE-2019-9133: windows only (I assume it it alsow relates to the "pandora"
  vendor, since the version the CVE refers to as "solving the issue" does not
  exist at KDE.)

* gnu/packages/kde-multimedia.scm (kmplayer): New variable.
* gnu/packages/patches/kmplayer-aarch64.patch,
  gnu/packages/patches/kmplayer-upstream_Fix-build-with-Qt-5.9.patch: New
  files.
* gnu/local.mk: Add them.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d695c51dad
gnu: Add kmix.
* gnu/packages/kde-multimedia.scm (kmix): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d720ecb613
gnu: Add kaffeine.
* gnu/packages/kde-multimedia.scm (kaffeine): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d1a6a94650
gnu: Add libkcddb.
* gnu/packages/kde-multimedia.scm (libkcddb): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
a5eddcd00f
gnu: Add k3b.
* gnu/packages/kde-multimedia.scm (k3b): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
2f9bb949cb
gnu: Add juk.
* gnu/packages/kde-multimedia.scm (juk): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
22b26dd257
gnu: Add dragon.
* gnu/packages/kde-multimedia.scm: New file.
* gnu/lokal.mk (MODULES): Add it.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
a8e149434e
gnu: Add audiofile.
Patches should fix all CVEs reported by `guix lint`:
CVE-2015-7747; CVE-2017-6827, CVE-2017-6828, CVE-2017-6829,
CVE-2017-6830, CVE-2017-6831, CVE-2017-6832, CVE-2017-6833,
CVE-2017-6834, CVE-2017-6835, CVE-2017-6836, CVE-2017-6837,
CVE-2017-6838, CVE-2017-6839; CVE-2018-13440; CVE-2018-17095

Since the patches do not reference to CVEs, it's a bit hard to tell which
patch actually closes which CVE.  Debian reports all these to be closed by
the patches below and NixPkgs provides references.

* gnu/packages/audio.scm (audiofile): New variable.
* gnu/packages/patches/audiofile-fix-datatypes-in-tests.patch,
  gnu/packages/patches/audiofile-fix-sign-conversion.patch,
  gnu/packages/patches/audiofile-CVE-2015-7747.patch,
  gnu/packages/patches/audiofile-CVE-2018-13440.patch,
  gnu/packages/patches/audiofile-CVE-2018-17095.patch,
  gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch,
  gnu/packages/patches/audiofile-Fail-on-error-in-parseFormat.patch,
  gnu/packages/patches/audiofile-Fix-index-overflow-in-IMA.cpp.patch,
  gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch,
  gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch,
  gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch,
  gnu/packages/patches/audiofile-hurd.patch,
  gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch:
  New files.
* gnu/local.mk: Add them.
2019-12-26 16:44:53 +01:00
Riku Viitanen
9d25a4548c
gnu: python-fonttools: Update home-page.
https://github.com/behdad/fonttools permanently redirects to
https://github.com/fonttools/fonttools.

* gnu/packages/python-xyz.scm (python-fonttools)[home-page]: Change to current.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-12-26 15:58:21 +01:00
Marius Bakke
3ebaa635f7
gnu: i3-gaps: Update source checksum.
Fixes <https://bugs.gnu.org/38739>.  This is a follow-up to commit
88c9408070.

* gnu/packages/wm.scm (i3-gaps)[source](sha256): Change to the correct hash.
[build-system]: Remove field, because it is superfluous.
2019-12-26 15:45:13 +01:00
Marius Bakke
621fb83a1f
download: Enable TLS 1.3.
This reverts commit e4ee842026.

* guix/build/download.scm (tls-wrap): Dot not disable TLS 1.3.
2019-12-26 14:29:43 +01:00
Arun Isaac
e7453b3cb5
gnu: gdal: Use HTTPS home page URI.
* gnu/packages/geo.scm (gdal)[home-page]: Use HTTPS URI.
2019-12-26 18:54:43 +05:30
Arun Isaac
6cde07379f
gnu: gdal: Enable netCDF format driver.
* gnu/packages/geo.scm (gdal)[inputs]: Add netcdf.
2019-12-26 18:54:43 +05:30
Arun Isaac
838db4fcc7
gnu: gdal: Enable GPKG format driver.
* gnu/packages/geo.scm (gdal)[inputs]: Enable sqlite.
[arguments]: Add --with-sqlite3 to #:configure-flags.
2019-12-26 18:54:43 +05:30
Arun Isaac
0f05435682
gnu: gdal: Enable ODS format driver.
* gnu/packages/geo.scm (gdal)[inputs]: Add expat.
[arguments]: Add --with-expat to #:configure-flags.
2019-12-26 18:54:42 +05:30
Arun Isaac
1cbe7a3ed6
gnu: libspatialindex: Update to 1.9.3.
* gnu/packages/geo.scm (libspatialindex): Update to 1.9.3.
[build-system]: Switch to cmake-build-system.
[source]: Update URI.
2019-12-26 18:54:42 +05:30
Arun Isaac
75e2c05496
gnu: postgis: Update to 3.0.0.
* gnu/packages/geo.scm (postgis): Update to 3.0.0.
[inputs]: Add json-c and libjpeg-turbo. Replace proj.4 with proj.
2019-12-26 18:54:42 +05:30
Arun Isaac
e72557c08f
gnu: gdal: Update to 3.0.2.
* gnu/packages/geo.scm (gdal): Update to 3.0.2.
[inputs]: Add proj.
2019-12-26 18:54:42 +05:30
Arun Isaac
f9d328833f
gnu: libgeotiff: Update to 1.5.1.
* gnu/packages/patches/libgeotiff-adapt-test-script-for-proj-6.2.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/geo.scm (libgeotiff): Update to 1.5.1.
[inputs]: Replace proj.4 with proj.
[sources]: Add libgeotiff-adapt-test-script-for-proj-6.2.patch
to patches.
2019-12-26 18:54:42 +05:30
Arun Isaac
3500d7addc
gnu: Add proj.
* gnu/packages/geo.scm (proj): New variable.
2019-12-26 18:54:42 +05:30
Arun Isaac
d33afa26b4
gnu: geos: Update to 3.8.0.
* gnu/packages/geo.scm (geos): Update to 3.8.0.
2019-12-26 18:54:34 +05:30
Björn Höfling
00d81f9866
gnu: python-pyserial: Update to 3.4.
* gnu/packages/python-xyz.scm (python-pyserial): Update to 3.4.
2019-12-26 12:38:06 +01:00
Ricardo Wurmus
3c45b53ec9
gnu: Remove squashfs-tools-next.
* gnu/packages/compression.scm (squashfs-tools-next): Remove variable.
* guix/scripts/pack.scm (squashfs-image, guix-pack): Use squashfs-tools.
* tests/pack.scm: Use squashfs-tools.
2019-12-26 12:29:44 +01:00
Ricardo Wurmus
dedc66ef8e
gnu: axoloti-patcher-next: Remove commented expression.
* gnu/packages/axoloti.scm (axoloti-patcher-next)[arguments]: Remove commented
substitute* expression.
2019-12-26 12:00:01 +01:00
Christopher Baines
450a51b335
gnu: guix-data-service: Update to 0.0.1-11.7342280.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-11.7342280.
2019-12-26 10:53:44 +00:00
Christopher Baines
03460d2bd3
gnu: mumimu: Remove reference to guile-email.
The use of guile-email in this package definition seems to cause errors when
working with other packages, errors like: error: guile-email: unbound variable

I'm not sure why the version of the Guile email package is appropriate here
either, but for now just to avoid the problems, inline the current version of
the package (and add a comment so this is more obvious). This issue was
probably introduced in: c7b2b53980

* gnu/packages/mail.scm (mumimu)[version]: Inline the current value
of (package-version guile-email) as a string.
2019-12-26 10:35:37 +00:00
Ricardo Wurmus
8f2e2120c7
gnu: bluez-alsa: Place dbus configuration in canonical location.
* gnu/packages/audio.scm (bluez-alsa)[arguments]: Install dbus configuration
files to /etc/dbus-1/system.d.
2019-12-26 11:22:28 +01:00
Ricardo Wurmus
1a37fd1e72
gnu: artanis: Update to 0.4.1.
* gnu/packages/guile-xyz.scm (artanis): Update to 0.4.1.
[inputs]: Add nss; move guile-json-1 and guile-redis from here...
[propagated-inputs]: ...to here; add guile-readline.
[arguments]: Add phase "patch-references-to-libnss".
2019-12-26 11:19:15 +01:00
Efraim Flashner
fe338d7f00
gnu: Add zfs.
* gnu/packages/file-systems.scm (zfs): New variable.
2019-12-26 10:41:25 +02:00
Efraim Flashner
87a028100c
build-system: linux-module: Add substitutable keyword.
* guix/build-system/linux-module.scm (linux-module-build) Add
substitutable keyword.
2019-12-26 10:41:22 +02:00
Nicolas Goaziou
11140cf194
gnu: python-funcparserlib: Fix typo.
* gnu/packages/python-xyz.scm (python-funcparserlib): Fix typo in description.
2019-12-26 09:17:50 +01:00
Efraim Flashner
8f82e7e3dc
gnu: python-pathos: Run test suite.
* gnu/packages/python-xyz.scm (python-pathos)[arguments]: Use custom
'check phase.
[native-inputs]: Add python-pytest.
2019-12-26 09:38:37 +02:00
Mădălin Ionel Patrașcu
7e476ae819
gnu: Add python-pathos.
* gnu/packages/python-xyz.scm (python-pathos): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-12-26 09:37:43 +02:00
Riku Viitanen
b9d8aa0935
gnu: Add dvdbackup.
* gnu/packages/video.scm (dvdbackup): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-12-26 09:09:28 +02:00
Björn Höfling
e507d30c48
guix: swh: Fix again example URI in comment for <origin>.
This is a follow up to
6afea7489b

* guix/swh.scm(<origin>): Write 'https' instead of 'ttps' for the URL.
2019-12-26 00:19:39 +01:00