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Author SHA1 Message Date
Ricardo Wurmus
9996896dc2
gnu: Add python-peaks2utr. 
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
 2023-09-12 12:28:32 +02:00
Ricardo Wurmus
30ec6f2fb5
gnu: macs: Update to 2.2.9.1. 
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Move python-cython from here...
[inputs]: ...and python-numpy from here...
[propagated-inputs]: ...to here.
 2023-09-12 12:28:32 +02:00
宋文武
e2a7c227de
gnu: xfce4-terminal: Update to 1.1.0. 
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.1.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:39:21 +01:00
Artyom V. Poptsov
cdddc6bc28
gnu: guile-png: Update to 0.7.1 
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.1.
[arguments]: Update style and delete "strip" phase.
[description]: Update.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:36:29 +01:00
Hilton Chain
8294f45dfc
gnu: python-cgatcore: Update to 0.6.15. 
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.15.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:31:23 +01:00
Hilton Chain
d6ad06cd6c
gnu: python-apsw: Update to 3.42.0.1. 
* gnu/packages/databases.scm (python-apsw): Update to 3.42.0.1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:30:10 +01:00
Hilton Chain
8d51e31f86
gnu: sqlite-next: Update to 3.42.0. 
* gnu/packages/sqlite.scm (sqlite-next): Update to 3.42.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:30:08 +01:00
Andy Tai
3acd355455
gnu: svt-av1: Update to 1.7.0. 
* gnu/packages/video.scm (svt-av1): Update to 1.7.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-09-12 08:25:09 +01:00
Christopher Baines
93cb2880d6
gnu: nar-herder: Use guile-next. 
As this provides suspendable soft/custom ports, which I'd like to use.

* gnu/packages/package-management.scm (nar-herder)[native-inputs,inputs]: Use
guile-next.
 2023-09-12 08:15:07 +01:00
Christopher Baines
53f510dad6
gnu: skalibs: Remove i586-gnu from %supported-systems. 
* gnu/packages/skarnet.scm (skalibs)[supported-systems]: Remove i586-gnu.
 2023-09-12 08:03:49 +01:00
Christopher Baines
0e08ad7f19
gnu: linux-libre-headers: Remove i586-gnu from supported-systems. 
As I don't think attempting to build for the Hurd is useful.

* gnu/packages/heads.scm (make-linux-libre-headers*): Remove i586-gnu from
supported-systems.
 2023-09-12 08:03:49 +01:00
Christopher Baines
288799d3e8
gnu: musl-cross: Remove i586-gnu from supported-systems. 
As I don't think musl supports the Hurd.

* gnu/packages/heads.scm (musl-cross)[supported-systems]: Remove i586-gnu.
 2023-09-12 08:03:49 +01:00
Maxim Cournoyer
daeeaa2216
gnu: emacs-magit: Update to 3.3.0-6.7a1d503. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-6.7a1d503.
 2023-09-11 23:48:19 -04:00
Maxim Cournoyer
2a7f031ca9
gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs. 
This reinstate commit a5b5df7f7f with a fix to
the inner expand-uri procedure.
 2023-09-11 23:39:13 -04:00
Maxim Cournoyer
a9d5d1d9dd
Revert "gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs." 
This reverts commit a5b5df7f7f.  Pushed too
early.
 2023-09-11 23:30:43 -04:00
Maxim Cournoyer
a5b5df7f7f
gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs. 
Fixes <https://issues.guix.gnu.org/58697>.

* guix/gnu-maintenance.scm (import-html-updatable-release): Update doc.
<expand-uri>: New nested procedure.  Apply it to the origin URI.

Reported-by: kiasoc5 <kiasoc5@disroot.org>
 2023-09-11 22:53:38 -04:00
Cayetano Santos
5ff9afb5fd
gnu: emacs-mastodon: Update to 1.0.0-1.20dec88. 
* gnu/packages/emacs-xyz.scm (emacs-mastodon): Update to 1.0.0-1.20dec88.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-11 23:54:50 +02:00
Sergio Pastor Pérez
3235bfa25a
gnu: Add picket. 
* gnu/packages/image.scm (picket): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-11 23:51:09 +02:00
Sergio Pastor Pérez
a35bfb6116
gnu: Add mini. 
* gnu/packages/image.scm (mini): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-11 23:51:01 +02:00
Ludovic Courtès
1cca04d7cf
gnu: emacs-php-mode: Update URL. 
* gnu/packages/emacs-xyz.scm (emacs-php-mode)[source, home-page]: Update
URL and factorize it.

Co-authored-by: Piotr Kwiecinski <piokwiecinski@gmail.com>
 2023-09-11 23:36:36 +02:00
Fabio Natali
251bf55f50
gnu: Add emacs-notmuch-indicator. 
* gnu/packages/emacs-xyz.scm (emacs-notmuch-indicator): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-11 23:30:03 +02:00
Thanos Apollo
d514b7b4ad
gnu: Add emacs-yeetube. 
* gnu/packages/emacs-xyz.scm (emacs-yeetube): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-11 23:12:25 +02:00
Ludovic Courtès
3f76970fda
gnu: yelp: Provide dependencies to display "man:" URIs. 
Previously a command like the following one would fail to display the
expected man page:

  guix shell yelp coreutils -C \
     --expose=/tmp/.X11-unix --expose=/run/user \
     --expose=/var/run/dbus --expose=/etc/machine-id -E ^DISPLAY -- \
     /bin/sh -c \
     'export MANPATH=$GUIX_ENVIRONMENT/share/man; echo $MANPATH; yelp man:ls'

* gnu/packages/gnome.scm (yelp)[arguments]: New field.
[inputs]: Add ‘man-db’ and ‘groff-minimal’.

Reported-by: Luis Felipe <sirgazil@zoho.com>
 2023-09-11 22:58:02 +02:00
Efraim Flashner
ab971e9c19
system: vm-image: Remove duplicate packages. 
* gnu/system/examples/vm-image.tmpl (use-package-modules): Remove
unneeded modules.
(operating-system)[packages]: Remove nvi, wget.
 2023-09-11 10:56:03 +03:00
Maxim Cournoyer
2eb6df537c
gnu: Remove extraneous imports. 
* gnu/packages/perl.scm: Remove (gnu packages hurd) import.
* gnu/packages/boost.scm: Likewise.  Remove (srfi srfi-1).
 2023-09-10 09:19:18 -04:00
Olivier Dion
ff3eb85117
gnu: liburcu: Update to 0.14.0. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.14.0.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-09-09 19:03:38 -04:00
Olivier Dion
610752ac1a
gnu: multipath-tools: Update to 0.9.6. 
* gnu/packages/linux.scm (multipath-tools): Update to 0.9.6.
[#:make-flags]: Set systemd_prefix to output and remove SYSTEMDPATH.
[#:phases]: Add phase 'no-fortfify-3 before 'build.
[inputs]: Add util-linux "lib" output for libmount.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-09-09 19:03:37 -04:00
Leo Famulari
5db78e7c1b
gnu: linux-libre 5.15: Update to 5.15.131. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.131.
(linux-libre-5.15-pristine-source): Update hash.
 2023-07-23 22:26:06 -04:00
Leo Famulari
ea8a927011
gnu: linux-libre 6.1: Update to 6.1.52. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.52.
(linux-libre-6.1-pristine-source): Update hash.
 2023-07-23 22:26:05 -04:00
Leo Famulari
1bc0975786
gnu: linux-libre: Update to 6.4.15. 
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.15.
(linux-libre-6.4-pristine-source): Update hash.
 2023-07-23 22:26:01 -04:00
Efraim Flashner
62ea0a0d3a
gnu: global: Fix ctags creation using pygments. 
* gnu/packages/code.scm (global)[arguments]: Adjust configure-flags to
use a specific python interpreter.
 2023-09-09 21:25:08 +03:00
Ludovic Courtès
a4c35c607c
time-travel-manifest: Comment out versions older than 1.3.0 for now. 
* etc/time-travel-manifest.scm (%release-commits): Comment out revisions
older than 1.3.0.
 2023-09-09 19:36:05 +02:00
Ludovic Courtès
d4bd5bc799
time-travel-manifest: Add 1.4.0. 
* etc/time-travel-manifest.scm (%release-commits): Add 1.4.0.
 2023-09-09 19:33:31 +02:00
Sören Tempel
cd46993275
daemon: Fix build with GCC 13. 
The sqlite.hh file uses fixed-width integer types from stdint.h. As
such, it needs to include <cstdint>. Without this include, the file
doesn't compile successfully with GCC13.

See: https://gcc.gnu.org/gcc-13/porting_to.html#header-dep-changes

* nix/libstore/sqlite.hh: include <cstdint>

Signed-off-by: Sören Tempel <soeren@soeren-tempel.net>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 18:47:35 +02:00
Yovan Naumovski
9aed82fe05
gnu: vcmi: Update to 1.3.1. 
* gnu/packages/games.scm (vcmi): Update to 1.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:39 +02:00
Distopico
6fa720831f
gnu: rust-analyzer: Update required dependencies version. 
Use pinned versions of different dependencies required by
rust-analyzer@2022-01-10.

* gnu/packages/crates-io.scm (rust-salsa-0.17): Require
RUST-INDEXMAP-1.7.
(rust-serde-path-to-error-0.1): Require RUST-SERDE-JSON-1.0.73.
(rust-serde-repr-0.1): Require RUST-QUOTE-1.0.10,
RUST-PROC-MACRO2-1.0.34, RUST-SERDE-JSON-1.0.73, RUST-TRYBUILD-1.0.19.
* gnu/packages/rust-apps.scm (rust-analyzer): Adjust versions
similarly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
bf7fcedbdf
gnu: Add rust-trybuild-1.0.19. 
* gnu/packages/crates-io.scm (rust-trybuild-1.0.19): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
590d408c56
gnu: Add rust-serde-json-1.0.73. 
* gnu/packages/crates-io.scm (rust-serde-json-1.0.73): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
e32ae2fbf6
gnu: Add rust-quote-1.0.10. 
* gnu/packages/crates-io.scm (rust-quote-1.0.10): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
63eddbb920
gnu: Add rust-proc-macro2-1.0.34. 
* gnu/packages/crates-io.scm (rust-proc-macro2-1.0.34): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
26c10ac9bf
gnu: Add rust-either-1.6.0. 
* gnu/packages/crates-io.scm (rust-either-1.6.0): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
a4514556df
gnu: rust-analyzer: Fix build of version 2022-01-10. 
* gnu/packages/rust-apps.scm (rust-analyzer): Update dependency
rust-notify-5-pre.13.

This fixes the build of `rust-analyzer@2022-01-10`, which required a pinned
version of `rust-notify` (`rust-notify-5-pre.13`) to compile and
rust >= 1.64.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:38 +02:00
Distopico
58fe4574a9
gnu: Add rust-notify-5-pre.13. 
* gnu/packages/crates-io.scm (rust-notify-5-pre.13): New variable.

This pinned version is required by `rust-analyzer` version `2022-01-10`.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:37 +02:00
Thomas Albers
4cf4bd1ebe
services: cgit: Allow file-like objects for ‘root-readme’. 
* gnu/services/cgit.scm (cgit-configuration)[root-readme]: Accept
'file-object' instead of only 'string'

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-09 15:54:37 +02:00
Ludovic Courtès
859928fc99
gnu: cuirass: Update to 6131880. 
* gnu/packages/ci.scm (cuirass): Update to 6131880.
 2023-09-09 15:54:37 +02:00
Mekeor Melire
cab7ae94ec
gnu: Add emacs-jinx. 
* gnu/packages/emacs-xyz.scm (emacs-jinx): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-09-09 12:27:56 +02:00
Reily Siegel
5e72bb5c67
services: vpn: Fix broken format string for wireguard dns. 
* gnu/services/vpn.scm (wireguard-configuration-file): Fix broken format
string.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-09-09 12:24:12 +02:00
Cayetano Santos
9f6fa3a958
gnu: Add emacs-chatgpt-shell. 
* gnu/packages/emacs-xyz.scm (emacs-chatgpt-shell): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-09-09 12:24:12 +02:00
Guillaume Le Vaillant
f85c6ee26a
gnu: qgis: Fix build. 
* gnu/packages/geo.scm (qgis)[arguments]: Add test_core_authconfig to disabled
  tests in 'check' phase.
 2023-09-09 11:56:29 +02:00
Mathieu Othacehe
8d9bb5408a
gnu: linux-libre: Fix cross-compilation. 
Fix generic aarch64 kernel cross-compilation by providing the missing hexdump
binary.

* gnu/packages/linux.scm (linux-libre)[native-inputs]: Add util-linux.
 2023-09-09 11:03:16 +02:00