zimoun
e2e11f095f
gnu: r-bsgenome: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
2020-12-09 12:12:40 +01:00
Roel Janssen
6a7de43a58
gnu: r-topgo: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
2020-12-09 12:12:40 +01:00
Roel Janssen
26e2184fc1
gnu: r-genomicfeatures: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
2020-12-09 12:12:40 +01:00
zimoun
92377e7fea
gnu: r-rtracklayer: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
2020-12-09 12:12:39 +01:00
zimoun
077e813657
gnu: r-genomicalignments: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
2020-12-09 12:12:39 +01:00
zimoun
3ca5b05474
gnu: r-variantannotation: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
8607a5394b
gnu: r-summarizedexperiment: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
9168ab0911
gnu: r-rsamtools: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
2020-12-09 12:12:39 +01:00
zimoun
5d60273b77
gnu: r-biostrings: Update to 2.58.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
2020-12-09 12:12:39 +01:00
Roel Janssen
444b101dc2
gnu: r-biocparallel: Update to 1.24.1.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
2020-12-09 12:12:39 +01:00
zimoun
4fac3fe67d
gnu: r-biomart: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
2020-12-09 12:12:39 +01:00
zimoun
f517365cef
gnu: r-annotationdbi: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
2020-12-09 12:12:39 +01:00
zimoun
9103041d13
gnu: r-biobase: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
2020-12-09 12:12:38 +01:00
zimoun
7641dba3e6
gnu: r-genomicranges: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
2020-12-09 12:12:38 +01:00
zimoun
d972ab690e
gnu: r-limma: Update to 3.46.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
2020-12-09 12:12:38 +01:00
zimoun
5996929b36
gnu: r-edger: Update to 3.32.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
2020-12-09 12:12:38 +01:00
zimoun
cde7fcedf9
gnu: r-genomeinfodb: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
2ae3b7db24
gnu: r-bioccheck: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
1160c83caf
gnu: r-biocstyle: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
2020-12-09 12:12:38 +01:00
zimoun
182a080127
gnu: r-biocviews: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
2020-12-09 12:12:38 +01:00
zimoun
16a4822a07
gnu: r-grohmm: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
2020-12-09 12:12:37 +01:00
Roel Janssen
5598f53497
gnu: r-systempiper: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
2020-12-09 12:12:37 +01:00
zimoun
a05bb428e4
gnu: r-shortread: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
2020-12-09 12:12:37 +01:00
zimoun
74204b48eb
gnu: r-gostats: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
afbc8e1433
gnu: r-category: Update to 2.56.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
03312f052a
gnu: r-gseabase: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.
2020-12-09 12:12:37 +01:00
zimoun
7a57b229b6
gnu: r-rbgl: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.
2020-12-09 12:12:37 +01:00
zimoun
4451918e3a
gnu: r-annotationforge: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.
2020-12-09 12:12:37 +01:00
zimoun
a323c1e9b4
gnu: r-dexseq: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.
2020-12-09 12:12:37 +01:00
zimoun
936227f144
gnu: r-deseq2: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.30.0.
2020-12-09 12:12:37 +01:00
zimoun
64cf667e98
gnu: r-genefilter: Update to 1.72.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.0.
2020-12-09 12:12:36 +01:00
Roel Janssen
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
zimoun
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
...
* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
zimoun
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
zimoun
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
zimoun
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
zimoun
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
...
* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
Roel Janssen
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
zimoun
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
zimoun
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
zimoun
fafa94b065
gnu: r-delayedarray: Update to 0.16.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.0.
[propagated-inputs]: Add r-matrixgenerics; remove r-matrixstats.
2020-12-09 12:12:36 +01:00
Roel Janssen
c8da013780
gnu: Add r-matrixgenerics.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
Roel Janssen
47f6fd802e
gnu: Add r-ggalluvial.
...
* gnu/packages/cran.scm (r-ggalluvial): New variable.
2020-12-09 12:12:35 +01:00
zimoun
cf6033ee6e
gnu: r-iranges: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.0.
2020-12-09 12:12:35 +01:00
zimoun
57820475db
gnu: r-s4vectors: Update to 0.28.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.0.
2020-12-09 12:12:35 +01:00
zimoun
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
zimoun
7105658e9c
gnu: r-fithic: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
zimoun
724b770678
gnu: r-xvector: Update to 0.30.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.30.0.
2020-12-09 12:12:35 +01:00
zimoun
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
...
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
zimoun
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
