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Author SHA1 Message Date
Tobias Geerinckx-Rice
db2f95f1c2
gnu: libwhich: Compile natively, too. 
This follows up on commit 12424b3ecf.

* gnu/packages/julia.scm (libwhich)[arguments]: Fix non-cross
compilation.
 2020-11-13 19:43:25 +01:00
Roel Janssen
37ba374a53
gnu: Fix build for python-pysam. 
* gnu/packages/bioinformatics.scm (python-pysam): Use htslib-1.9,
  samtools-1.9, and bcftools-1.9.
 2020-11-13 16:16:43 +01:00
Roel Janssen
ecc309c142
gnu: Add bcftools-1.9. 
* gnu/packages/bioinformatics.scm (bcftools-1.9): New variable.
 2020-11-13 16:14:01 +01:00
Ekaitz Zarraga
3a15847685
gnu: dino: Update to 0.2.0 
Update of the recently released Dino 0.2.0 version.

Thanks!

From 0b764d48996f3851ee2596a25f1fd42a8d3f4063 Mon Sep 17 00:00:00 2001
From: Ekaitz Zarraga <ekaitz@elenq.tech>
Date: Fri, 13 Nov 2020 12:18:11 +0100
Subject: [PATCH] gnu: dino: Update to 0.2.0

    * gnu/packages/messaging.scm (dino): Update to 0.2.0

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-11-13 15:02:33 +01:00
Tobias Geerinckx-Rice
12424b3ecf
gnu: libwhich: Cross-compile. 
* gnu/packages/julia.scm (libwhich)[arguments]: Use CC-FOR-TARGET.
Look for zlib in NATIVE-INPUTS.
 2020-11-13 15:02:32 +01:00
Roel Janssen
c3232fcc77
gnu: bedtools: Use samtools-1.9. 
The build for bedtools with samtools 1.11 triggers a testsuite
failure which is reported here:
https://github.com/arq5x/bedtools2/issues/814

* gnu/packages/bioinformatics.scm (bedtools): Use samtools-1.9.
 2020-11-13 14:49:31 +01:00
Roel Janssen
da4a38edad
gnu: Add samtools-1.9. 
* gnu/packages/bioinformatics.scm (samtools-1.9): New variable.
 2020-11-13 14:49:27 +01:00
Roel Janssen
3ede804f6d
gnu: Add htslib-1.9. 
* gnu/packages/bioinformatics.scm (htslib-1.9): New variable.
 2020-11-13 14:49:20 +01:00
Tobias Geerinckx-Rice
2646b9d6d3
gnu: vim: Update to 8.2.1980. 
* gnu/packages/vim.scm (vim): Update to 8.2.1980.
 2020-11-13 01:52:16 +01:00
Tobias Geerinckx-Rice
bb2232206c
gnu: criu: Support nftables. 
* gnu/packages/virtualization.scm (criu)[inputs]: Add nftables.
 2020-11-13 01:43:57 +01:00
Tobias Geerinckx-Rice
0a46a1e918
gnu: criu: Update to 3.15. 
* gnu/packages/virtualization.scm (criu): Update to 3.15.
 2020-11-13 01:43:56 +01:00
Tobias Geerinckx-Rice
c645d44f01
gnu: youtube-dl: Update to 2020.11.12. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.11.12.
 2020-11-13 01:43:56 +01:00
Tobias Geerinckx-Rice
a400ab4f14
gnu: knot: Update to 3.0.2. 
* gnu/packages/dns.scm (knot): Update to 3.0.2.
 2020-11-13 01:27:24 +01:00
Tobias Geerinckx-Rice
72ee78a6bf
gnu: muchsync: Update to 6. 
* gnu/packages/mail.scm (muchsync): Update to 6.
 2020-11-13 01:27:23 +01:00
Tobias Geerinckx-Rice
f41c9ab4c3
gnu: gpxsee: Update to 7.36. 
* gnu/packages/gps.scm (gpxsee): Update to 7.36.
 2020-11-13 01:27:23 +01:00
Tanguy Le Carrour
5f72da5f8a
gnu: alot: Update to 0.9.1. 
* gnu/packages/mail.scm (alot): Update to 0.9.1.
[arguments]: Fix some tests and disable some others.
[native-inputs]: Add procps.
[inputs]: Remove python2-magic, python2-configobj, python2-twisted,
python2-urwid, python2-urwidtrees, python2-pygpgme and python2-notmuch.
Add gnupg, python-magic, python-configobj, python-twisted,
python-service-identity, python-urwid, python-urwidtrees,
python-gpg and python-notmuch.
[synopsis]: Update synopsis.
[description]: Update description.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-11-12 23:31:26 +01:00
Tanguy Le Carrour
30a1476bbc
gnu: afew: Update to 3.0.1. 
* gnu/packages/mail.scm (afew): Update to 3.0.1.
[inputs]: Add notmuch and python-dkimpy.
[native-inputs]: Add python-freezegun.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-11-12 23:24:16 +01:00
Marius Bakke
1ed9a078e1
gnu: ungoogled-chromium: Update to 86.0.4240.198-0.b68e17f [security fixes]. 
This fixes CVE-2020-16013 and CVE-2020-16017.

* gnu/packages/chromium.scm (%chromium-version): Set to 86.0.4240.198.
(ungoogled-chromium): Update hash.
 2020-11-12 21:54:17 +01:00
Tobias Geerinckx-Rice
66479da5e2
gnu: tor: Update to 0.4.4.6 [fixes TROVE-2020-005]. 
* gnu/packages/tor.scm (tor): Update to 0.4.4.6.
 2020-11-12 19:01:13 +01:00
Pierre Neidhardt
a002e8a4f5
gnu: emacs-lispy: Update to 20201109. 
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20201109.
[native-inputs]: Add which.
[arguments]: Fix test command to not use straight.el and disable
failing test related to Clojure.
 2020-11-12 15:21:57 +01:00
Ludovic Courtès
07914def98
Merge branch 'version-1.2.0' 2020-11-12 10:47:25 +01:00
Ludovic Courtès
ef1107e2cc
nls: Update string translations. 2020-11-12 10:13:45 +01:00
Ludovic Courtès
7547be7d99
nls: Update translations of the manual. 2020-11-12 10:12:45 +01:00
Julien Lepiller
74fdbbfaad
nls: Update translations of the manual. 2020-11-12 09:39:17 +01:00
Julien Lepiller
e55f6418cd
nls: Update 'ta' translation. 2020-11-12 09:39:10 +01:00
Ludovic Courtès
b73981369e
lint: patch-file-names: Simplify 'search-patch' error handling. 
* guix/lint.scm (check-patch-file-names): Remove 'message-condition?'
guard, which is useless since d51bfe242f.
Remove call to 'format' in the 'formatted-message?' case.
 2020-11-12 09:29:05 +01:00
Efraim Flashner
a13063d6ac
gnu: sbcl-cffi-libffi: Fix building on ARM hardware. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi-libffi-bootstrap)[arguments]: Add
phase to adapt code to changes in libffi.
 2020-11-11 22:49:22 +02:00
Efraim Flashner
4ce58ac0ed
gnu: sbcl-cffi-grovel: End all phases with #t. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi-grovel)[arguments]: End custom
'install-headers phase with #t.
 2020-11-11 22:49:19 +02:00
Marius Bakke
5f799dd119
gnu: python-matplotlib: Remove unused input. 
* gnu/packages/python-xyz.scm (python-matplotlib)[inputs]: Remove IMAGEMAGICK.
 2020-11-11 21:37:12 +01:00
Marius Bakke
184598a43c
gnu: i3lock-fancy: Fix defunct substitution. 
* gnu/packages/wm.scm (i3lock-fancy)[arguments]: Fix faulty regular expression.
 2020-11-11 21:37:12 +01:00
Marius Bakke
1aa765fd52
gnu: i3lock-fancy: Inputs are not native. 
* gnu/packages/wm.scm (i3lock-fancy)[native-inputs]: Move everything ...
[inputs]: ... here.
 2020-11-11 21:37:12 +01:00
Marius Bakke
5b48d6de23
gnu: a2ps: Remove unused input. 
* gnu/packages/pretty-print.scm (a2ps)[inputs]: Remove IMAGEMAGICK.
 2020-11-11 21:37:12 +01:00
Marius Bakke
18fb81634c
gnu: fbida: Remove unused input. 
* gnu/packages/pdf.scm (fbida)[inputs]: Remove IMAGEMAGICK.
 2020-11-11 21:37:12 +01:00
Marius Bakke
3645716c56
gnu: caja-extensions: Remove unused input. 
* gnu/packages/mate.scm (caja-extensions)[inputs]: Remove IMAGEMAGICK.
 2020-11-11 21:37:12 +01:00
Marius Bakke
93317a0417
gnu: mgba: Remove unused input. 
* gnu/packages/emulators.scm (mgba)[inputs]: Remove IMAGEMAGICK.
 2020-11-11 21:37:12 +01:00
Marius Bakke
2ee194dd7d
gnu: networking.scm: Remove unused module import. 
* gnu/packages/networking.scm: Don't import (gnu packages version-control).
 2020-11-11 21:37:11 +01:00
Marius Bakke
b05c96d93d
gnu: emacs.scm: Remove unused module import. 
* gnu/packages/emacs.scm: Don't import (gnu packages imagemagick).
 2020-11-11 21:37:11 +01:00
Tobias Geerinckx-Rice
c07c8892ee
gnu: python-libtmux: Update to 0.8.5. 
* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.5.
[arguments]: Set LANG to make the test suite pass.
 2020-11-11 18:15:49 +01:00
Tobias Geerinckx-Rice
9e06166da2
gnu: evisum: Update to 0.5.7. 
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.7.
 2020-11-11 18:15:49 +01:00
Tobias Geerinckx-Rice
112c584c22
gnu: xfce4-screensaver: Update to 0.1.11. 
* gnu/packages/xfce.scm (xfce4-screensaver): Update to 0.1.11.
 2020-11-11 18:15:48 +01:00
Tobias Geerinckx-Rice
5e7eb053c9
gnu: xfce4-weather-plugin: Update to 0.10.2. 
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.2.
 2020-11-11 18:15:48 +01:00
Leo Famulari
12d155e2e5
gnu: linux-libre 4.4: Update to 4.4.243. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.243.
(linux-libre-4.4-pristine-source): Update hash.
 2020-11-11 11:55:09 -05:00
Leo Famulari
36d67f5ed0
gnu: linux-libre 4.9: Update to 4.9.243. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.243.
(linux-libre-4.9-pristine-source): Update hash.
 2020-11-11 11:55:09 -05:00
Leo Famulari
fc42f7e6fd
gnu: linux-libre 4.14: Update to 4.14.206. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.206.
(linux-libre-4.14-pristine-source): Update hash.
 2020-11-11 11:55:09 -05:00
Leo Famulari
175805d332
gnu: linux-libre 4.19: Update to 4.19.157. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.157.
(linux-libre-4.19-pristine-source): Update hash.
 2020-11-11 11:55:09 -05:00
Leo Famulari
f9a052bee8
gnu: linux-libre 5.4: Update to 5.4.77. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.77.
(deblob-scripts-5.4, linux-libre-5.4-pristine-source): Update hashes.
 2020-11-11 11:55:09 -05:00
Leo Famulari
785190c755
gnu: linux-libre: Update to 5.9.8. 
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.8.
(deblob-scripts-5.9, linux-libre-5.9-pristine-source): Update hashes.
 2020-11-11 11:55:05 -05:00
Tobias Geerinckx-Rice
c746acf3a1
gnu: eid-mw: Don't try to bootstrap twice. 
* gnu/packages/security-token.scm (eid-mw)[arguments]: Replace the
build system's ‘bootstrap’ phase instead of creating another one.
 2020-11-11 17:48:04 +01:00
Raphaël Mélotte
e6e31a59eb
gnu: eid-mw: Update to 5.0.8. 
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.8.
[arguments]: Add a ‘remove-failing-test’ phase.
[inputs]: Add autoconf-archive and libassuan.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-11-11 17:48:03 +01:00
Raphaël Mélotte
d2bf896155
gnu: eid-mw: Build reproducibly. 
* gnu/packages/security-token.scm (eid-mw)[arguments]: Add
a "make-reproducible" phase to set build date to the epoch.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-11-11 17:48:03 +01:00