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599 commits

Author SHA1 Message Date
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Ricardo Wurmus
312ec128af
gnu: python-pandas: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
 2019-12-04 08:56:36 +01:00
Marius Bakke
0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Guillaume Le Vaillant
df81de8683
gnu: Add libdbi-drivers. 
* gnu/packages/databases.scm (libdbi-drivers): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Guillaume Le Vaillant
ae8a0184bf
gnu: Add libdbi. 
* gnu/packages/databases.scm (libdbi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Marius Bakke
f056553c6b
Merge branch 'master' into staging 2019-11-15 20:11:35 +01:00
Roel Janssen
95c633e0d8
databases: Fix build of virtuoso-ose. 
Virtuoso cannot be built with versions of OpenSSL >1.1.0.

* gnu/packages/databases.scm (virtuoso-ose)[inputs]: Change OPENSSL to OPENSSL-1.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-11-03 19:33:47 +01:00
Tobias Geerinckx-Rice
fd423e4df7
gnu: leveldb: Update home page. 
* gnu/packages/databases.scm (leveldb)[home-page]: Update.
 2019-11-01 22:51:22 +01:00
Marius Bakke
998e6cdcd2
Merge branch 'master' into staging 2019-10-30 14:32:53 +01:00
Leo Famulari
561d391ba8
gnu: Go standard library 'x' packages: Consolidate. 
* gnu/packages/golang.scm (go-golang-org-x-text, go-golang-org-x-sys, go-golang-org-x-net,
go-golang-org-x-time): New variables.
(go-golang.org-x-crypto-ssh-terminal, go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-text-encoding,
go-golang-org-x-text-transform, go-golang-org-x-text-unicode-norm,
go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf, go-golang-org-x-net-context,
go-golang-org-x-net-internal-socks, go-golang-org-x-net-internal-socket,
go-golang-org-x-net-internal-iana, go-golang-org-x-net-ipv6,
go-golang-org-x-net-proxy, go-golang-org-x-sys-cpu, go-golang-org-x-sys-unix,
go-golang-org-x-time-rate): Remove variables.
(go-github-com-sirupsen-logrus, go-github-com-docker-distribution,
go-github-com-libp2p-go-libp2p-crypto,
go-github-com-multiformats-go-multihash,
go-github-com-libp2p-go-libp2p-peer,
go-github-com-libp2p-go-libp2p-metrics,
go-github-com-multiformats-go-multiaddr,
go-github-com-multiformats-go-multiaddr-net,
go-github-com-mattn-go-isatty, go-github-com-gdamore-encoding,
go-github-com-gdamore-tcell): Adjust accordingly.
* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): Likewise.
* gnu/packages/databases.scm (mongo-tools): Likewise.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api, gx, gx-go): Likewise.
* gnu/packages/web.scm (poussetaches): Likewise.
* gnu/packages/terminals.scm (go-github-com-junegunn-fzf,
go-github.com-howeyc-gopass): Likewise.
(go-golang.org-x-crypto-ssh-terminal): Remove variable.
* gnu/packages/syncthing.scm (syncthing,
go-github-com-oschwald-geoip2-golang,
go-github-com-oschwald-maxminddb-golang,
go-github-com-syncthing-notify): Adjust accordingly.
* gnu/packages/linux.scm (go-netlink): Likewise.
 2019-10-29 11:03:12 -04:00
Marius Bakke
4c1918db34
Merge branch 'master' into staging 2019-10-23 20:48:55 +02:00
Christopher Baines
9d67480adf
gnu: mongodb: Fix build. 
* gnu/packages/databases.scm (mongodb)[inputs]: Use openssl 1, as 1.1. doesn't
work.
[arguments]: Change how a constant is defined in the tests to allow compiling
with a newer version of GCC.
 2019-10-22 07:27:14 +01:00
Christopher Baines
6fc03fccd4
gnu: Add ephemeralpg. 
This is a general utility, but I'm particularly interested in using this to
enable build time tests for the guix-data-service package.

* gnu/packages/databases.scm (ephemeralpg): New variable.
 2019-10-21 18:28:07 +01:00
Marius Bakke
b95d1b3289
Merge branch 'master' into staging 2019-10-18 18:10:47 +02:00
Tobias Geerinckx-Rice
79bc917685
gnu: python-pylibmc: Update to 1.6.1. 
* gnu/packages/databases.scm (python-pylibmc): Update to 1.6.1.
 2019-10-16 05:40:59 +02:00
Tobias Geerinckx-Rice
19181820bc
gnu: python-crate: Update to 0.23.2. 
* gnu/packages/databases.scm (python-crate): Update to 0.23.2.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
8e45ec509e
gnu: sqitch: Remove perl-file-homedir input. 
* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice
f64cd5d1ac
gnu: sqitch: Update to 1.0.0. 
* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
 2019-10-14 17:14:45 +02:00
Julien Lepiller
2b8491fbbe
gnu: mariadb: Split into out, lib and dev. 
* gnu/packages/databases.scm (mariadb): Split into out, lib and dev.
(perl-dbd-mysql, python-mysqlclient): Adjust dependencies.
* gnu/packages/bioinformatics.scm (kentutils): Adjust dependencies.
* gnu/packages/cran.scm (r-rmysql): Adjust dependencies.
* gnu/packages/emacs-xyz.scm (emacs-emacsql): Adjust dependencies.
* gnu/packages/kodi.scm (kodi): Adjust dependencies.
* gnu/packages/qt.scm (qt, qtbase): Adjust dependencies.
* gnu/packages/ruby.scm (ruby-mysql2): Adjust dependencies.
 2019-10-12 13:07:41 +02:00
Marius Bakke
2fa55c7247
gnu: mariadb: Build with GCC 5 on ARMv7. 
Fixes <https://bugs.gnu.org/37605>.

* gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the
current system is ARMv7.
 2019-10-08 10:16:04 +02:00
Efraim Flashner
aace6f6dba
gnu: mysql: Update to 5.7.27. 
* gnu/packages/databases.scm (mysql): Update to 5.7.27.
[native-inputs]: Add pkg-config.
[inputs]: Add libtirpc, rpcsvc-proto.
 2019-10-03 19:28:56 +03:00
Mark H Weaver
65542a8852
Merge branch 'master' into core-updates 2019-09-06 20:46:00 -04:00
Marius Bakke
c0de48c9a5
gnu: tdb: Update to 1.4.2. 
* gnu/packages/databases.scm (tdb): Update to 1.4.2.
 2019-09-05 00:21:42 +02:00
Mark H Weaver
0481289cbc
Merge branch 'master' into core-updates 2019-08-29 17:19:18 -04:00
Marius Bakke
6743080ccc
gnu: python-alembic: Update to 1.0.11. 
* gnu/packages/databases.scm (python-alembic): Update to 1.0.11.
 2019-08-29 14:44:21 +02:00
Tobias Geerinckx-Rice
d5be746a85
gnu: python-pyodbc: Update to 4.0.27. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.27.
 2019-08-24 04:56:08 +02:00
Mark H Weaver
893c2df00d
Merge branch 'master' into core-updates 2019-08-22 15:53:27 -04:00
Tobias Geerinckx-Rice
23503abbc0
gnu: python-redis: Update to 3.3.8. 
* gnu/packages/databases.scm (python-redis): Update to 3.3.8.
 2019-08-22 15:35:32 +02:00
Marius Bakke
462ad9f56b
Merge branch 'master' into core-updates 2019-08-13 20:42:06 +02:00
Marius Bakke
1b1b006afd
Merge branch 'staging' 2019-08-13 18:51:12 +02:00
Efraim Flashner
32c517a327
gnu: 4store: Remove unneeded build phase. 
* gnu/packages/databases.scm (4store)[arguments]: Remove unneeded
'generate-configure phase.
 2019-08-09 12:13:18 +03:00
Efraim Flashner
50e20b8fee
gnu: 4store: Don't use unstable tarball. 
* gnu/packages/databases.scm (4store)[source]: Download using
'git-fetch'.
 2019-08-09 12:12:08 +03:00
Marius Bakke
36f400f616
Merge branch 'master' into staging 2019-08-08 18:14:45 +02:00
Marius Bakke
14b80bf6ca
gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
 2019-08-08 17:48:46 +02:00
Marius Bakke
cbfddc2f33
gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
 2019-08-08 17:48:46 +02:00
Marius Bakke
c8f5827a56
gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql): Update to 10.10.
 2019-08-08 17:32:18 +02:00
Marius Bakke
cc3c5fc5e1
gnu: mariadb: Update to 10.1.41 [security fixes]. 
This fixes CVE-2019-2805, CVE-2019-2740, CVE-2019-2739, and CVE-2019-2737.

* gnu/packages/databases.scm (mariadb): Update to 10.1.41.
[source](uri): Update download URL.
 2019-08-04 13:49:56 +02:00
Marius Bakke
f184893af0
gnu: MariaDB: Disable the TokuDB plugin. 
Fixes <https://bugs.gnu.org/35521>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in
<#:configure-flags>.  Enable the "innodb_fts.crash_recovery" test, which
likely failed because of the high I/O load induced by TokuDB.
[inputs]: Remove SNAPPY.

(cherry picked from commit bba7a77ed9)
 2019-08-04 13:49:55 +02:00
Marius Bakke
bba7a77ed9
gnu: MariaDB: Disable the TokuDB plugin. 
Fixes <https://bugs.gnu.org/35521>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in
<#:configure-flags>.  Enable the "innodb_fts.crash_recovery" test, which
likely failed because of the high I/O load induced by TokuDB.
[inputs]: Remove SNAPPY.
 2019-07-14 23:06:24 +02:00
Marius Bakke
fb9a23a3f3
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/python-xyz.scm
	gnu/packages/xml.scm
	guix/gexp.scm
	po/guix/POTFILES.in
 2019-07-12 01:03:53 +02:00
Marius Bakke
878a6baa4c
Merge branch 'staging' 2019-07-11 20:33:44 +02:00
Efraim Flashner
2d775ed2d6
gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193] 
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
 2019-07-10 11:06:15 +03:00
Marius Bakke
7a05fdd0e1
Merge branch 'master' into staging 2019-07-10 00:55:42 +02:00
Pierre Langlois
450d5dc289
gnu: Add python-crate. 
* gnu/packages/databases.scm (python-crate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Marius Bakke
4fb9165515
Merge branch 'staging' into core-updates 2019-07-02 20:18:16 +02:00
Marius Bakke
e307f52e01
gnu: postgresql@10: Update to 10.9. 
* gnu/packages/databases.scm (postgresql): Update to 10.9.
 2019-07-02 17:14:34 +02:00
Ludovic Courtès
5cc1075a76
Merge branch 'master' into core-updates 2019-06-27 23:33:48 +02:00
Tobias Geerinckx-Rice
591464e365
gnu: memcached: Update to 1.5.16. 
* gnu/packages/databases.scm (memcached): Update to 1.5.16.
 2019-06-25 16:24:11 +02:00
Gábor Boskovits
91477def51
gnu: Add postgresql-11. 
* gnu/packages/databases.scm(postgresql-11): New variable.
 2019-06-24 10:41:16 +02:00
Tobias Geerinckx-Rice
6263202ba2
gnu: python-lmdb: Update to 0.95. 
* gnu/packages/databases.scm (python-lmdb): Update to 0.95.
 2019-06-22 01:02:14 +02:00