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22907 commits

Author SHA1 Message Date
Marius Bakke
c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.

Reported by Leo Famulari in <https://bugs.gnu.org/27939>.

* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
Marius Bakke
c9f4f56b24
gnu: git: Enable tests.
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
Leo Famulari
81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
Ricardo Wurmus
9e37e537a2
gnu: Add missing references to (gnu packages cran).
This is a follow-up to commit a8cba9dd11.

Reported-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-03 22:15:57 +02:00
Efraim Flashner
7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
This is a follow up to a8cba9dd11.

* gnu/packages/bioinformatics.scm: Add (gnu packages cran) to #:use-modules.
2017-08-03 21:39:12 +03:00
Danny Milosavljevic
cf189709bc
vm: Use grub-hybrid's grub-mkrescue.
* gnu/system/vm.scm (system-disk-image): Use grub-hybrid's grub-mkrescue.
* gnu/bootlader/grub.scm (grub-mkrescue-bootloader): New variable.
2017-08-03 18:13:03 +02:00
Ricardo Wurmus
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus
ceb802a31c
gnu: r-desc: Update to 1.1.1.
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus
5e0de29892
gnu: r-seqminer: Update to 6.0.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus
4e0c847d59
gnu: r-wgcna: Update to 1.60.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus
c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus
023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus
7150f1c30c
gnu: r-optparse: Update to 1.4.4.
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus
3f6ec083ec
gnu: r-bookdown: Update to 0.4.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus
85cd755417
gnu: r-tclust: Update to 1.2-7.
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus
41692b2963
gnu: r-mclust: Update to 5.3.
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus
d58faa7f44
gnu: r-rann: Update to 2.5.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus
80d1185076
gnu: r-gdata: Update to 2.18.0.
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus
81c057ced9
gnu: r-sparsem: Update to 1.77.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus
76040b8561
gnu: r-readr: Update to 1.1.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus
d8048a1212
gnu: r-withr: Update to 2.0.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus
63f934e672
gnu: r-backports: Update to 1.1.0.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus
c832d326a1
gnu: r-formula: Update to 1.2-2.
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
f05c6275b7
gnu: r-r6: Update to 2.2.2.
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
b07c8c0156
gnu: r-knitr: Update to 1.16.
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
12cd797541
gnu: r-evaluate: Update to 0.10.1.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
d5ce380711
gnu: r-dbi: Update to 0.7.
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus
831858a7d3
gnu: r-bit64: Update to 0.9-7.
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00