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Author SHA1 Message Date
Guillaume Le Vaillant
ae8a0184bf
gnu: Add libdbi. 
* gnu/packages/databases.scm (libdbi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Guillaume Le Vaillant
cd2ce8abae
gnu: Add pam-mount. 
* gnu/packages/admin.scm (pam-mount): New variable.
* gnu/packages/patches/pam-mount-luks2-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Guillaume Le Vaillant
f170603e02
gnu: Add libhx. 
* gnu/packages/c.scm (libhx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:36 +01:00
Vagrant Cascadian
3a4d5ddd32
daemon: boost::format: Fix typo "referred". 
* nix/boost/format/exceptions.hpp (too_few_args): Fix typo.
  (too_many_args): Fix typo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:36 +01:00
Ludovic Courtès
2ce08a5d79
guix build: '--keep-failed' implies '--no-offload'. 
* guix/scripts/build.scm (set-build-options-from-command-line): Pass
 #:offload? #f when 'keep-failed? is true.
* doc/guix.texi (Common Build Options): Document it.
 2019-11-26 00:16:36 +01:00
Ludovic Courtès
7f44ab48f9
Use 'offload?' instead of 'build-hook?' internally. 
* guix/scripts/archive.scm (%default-options): Replace 'build-hook?'
with 'offload?'.
* guix/scripts/build.scm (set-build-options-from-command-line): Pass
 #:offload? instead of #:use-build-hook?.
(%standard-build-options): Use the 'offload? key instead of 'build-hook?.
(%default-options): Replace 'build-hook?' with 'offload?'.
* guix/scripts/copy.scm (%default-options): Likewise.
* guix/scripts/deploy.scm (%default-options): Likewise.
* guix/scripts/environment.scm (%default-options): Likewise.
* guix/scripts/pack.scm (%default-options): Likewise.
* guix/scripts/package.scm (%default-options): Likewise.
* guix/scripts/pull.scm (%default-options): Likewise.
* guix/scripts/system.scm (%default-options): Likewise.
* guix/scripts/time-machine.scm (%default-options): Likewise.
* guix/store.scm (set-build-options): Have #:use-build-hook? default
to *unspecified*.  Add #:offload?.  Add call to 'warn-about-deprecation'
when #:use-build-hook? is specified.
 2019-11-26 00:16:36 +01:00
Ludovic Courtès
dc209d5a5d
guix build, daemon: Rename "--no-build-hook" to "--no-offload". 
This is a followup to bc69ea2d60.

* guix/scripts/build.scm (show-build-options-help): Rename
"--no-build-hook" to "--no-offload".
(%standard-build-options): Likewise, and warn when "--no-build-hook" is
passed.
* nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark
"--no-build-hook" as hidden.
* guix/scripts/offload.scm: Adjust comment.
* doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace
"--no-build-hook" with "--no-offload".
* etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust
accordingly.
 2019-11-26 00:16:36 +01:00
Ludovic Courtès
6a893fa869
doc: cookbook: Add cross-references to the Guile manual. 
* doc/guix-cookbook.texi (A Scheme Crash Course): Add cross-reference to
the Guile manual.
 2019-11-26 00:16:36 +01:00
Ludovic Courtès
cf1e6f5f90
doc: cookbook: Use @result{} & co. instead of a '>' prompt. 
* doc/guix-cookbook.texi (A Scheme Crash Course)
(Extended example): Use @result{}, @print{}, and @error{}.
 2019-11-26 00:16:35 +01:00
Ludovic Courtès
0cbef07b34
doc: cookbook: Use Texinfo quotes. 
* doc/guix-cookbook.texi: Use Texinfo quotes ``like this'' instead of
straight quotes or curly quotes.
 2019-11-26 00:16:35 +01:00
Ludovic Courtès
e97a4a2944
doc: cookbook: Add cross-reference about ./pre-inst-env. 
* doc/guix-cookbook.texi (Direct checkout hacking): Refer to "Running
Guix Before It Is Installed".
 2019-11-26 00:16:35 +01:00
Ludovic Courtès
d482e13fbe
doc: cookbook: Use @lisp for Scheme snippets. 
* doc/guix-cookbook.texi: Use @lisp instead of @example where
appropriate.
 2019-11-26 00:16:35 +01:00
Ludovic Courtès
f5698dfb87
tests: Avoid unnecessary use of 'mock'. 
* tests/build-utils.scm ("wrap-script, simple case"): Use the real
'which' instead of mocking it.
 2019-11-26 00:16:35 +01:00
Ludovic Courtès
1d64afbdc0
tests: Avoid (catch 'srfi-34 …) form. 
* tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard'
instead of "catch 'srfi-34".
 2019-11-26 00:16:35 +01:00
Mark H Weaver
5d297ca676
gnu: linux-libre: Update to 5.3.13. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13.
(linux-libre-5.3-pristine-source): Update hash.
 2019-11-25 12:08:12 -05:00
Mark H Weaver
6c693a6e3f
gnu: linux-libre@4.19: Update to 4.19.86. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86.
(linux-libre-4.19-pristine-source): Update hash.
 2019-11-25 12:08:09 -05:00
Mark H Weaver
79832fb285
gnu: linux-libre@4.14: Update to 4.14.156. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156.
(linux-libre-4.14-pristine-source): Update hash.
 2019-11-25 12:08:02 -05:00
Alex Griffin
377606238f
gnu: Add netcat-openbsd. 
* gnu/packages/admin.scm (netcat-openbsd): New variable.
 2019-11-25 09:43:38 -06:00
Ricardo Wurmus
dae3458cd2
gnu: r-rrcov: Update to 1.4-9. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9.
 2019-11-25 15:25:10 +01:00
Ricardo Wurmus
166995af92
gnu: r-future: Update to 1.15.1. 
* gnu/packages/cran.scm (r-future): Update to 1.15.1.
 2019-11-25 15:25:10 +01:00
Ricardo Wurmus
0ee5e9fb75
gnu: r-epi: Update to 2.40. 
* gnu/packages/cran.scm (r-epi): Update to 2.40.
 2019-11-25 15:25:10 +01:00
Ricardo Wurmus
b674f87a46
gnu: r-vioplot: Update to 0.3.3. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.3.
 2019-11-25 15:25:10 +01:00
Jan Nieuwenhuizen
2baed64291
gnu: mes: Update to 0.21. 
* gnu/packages/mes.scm (mes): Update to 0.21.
 2019-11-25 14:33:27 +01:00
Ricardo Wurmus
b5d4d5b9bc
gnu: guile-gi: Update to 0.2.1. 
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1.
[arguments]: Add phase to start Xorg server for tests.
[native-inputs]: Add xorg-server.
 2019-11-25 14:05:39 +01:00
Ricardo Wurmus
ea2884c12c
gnu: Add bsequencer. 
* gnu/packages/music.scm (bsequencer): New variable.
 2019-11-25 14:05:39 +01:00
Ricardo Wurmus
19600e0810
gnu: r-bookdown: Update to 0.16. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.16.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
401cc85e61
gnu: r-protviz: Update to 0.5.1. 
* gnu/packages/cran.scm (r-protviz): Update to 0.5.1.
[inputs]: Remove perl and python-2.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
138fbdf354
gnu: r-rnifti: Update to 1.0.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.0.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
2eff036278
gnu: r-tidytree: Update to 0.3.0. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.0.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
3356eb511c
gnu: r-sjplot: Update to 2.8.0. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.0.
[propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and
r-parameters.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
10faf81097
gnu: r-tidyverse: Update to 1.3.0. 
* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0.
[propagated-inputs]: Add r-pillar.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
eb6aad884f
gnu: r-parameters: Update to 0.3.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.3.0.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
a6828e0bf5
gnu: r-abn: Update to 2.2. 
* gnu/packages/cran.scm (r-abn): Update to 2.2.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
f94705d606
gnu: r-limsolve: Update to 1.5.6. 
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.6.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
3b2c3878f5
gnu: r-prodlim: Update to 2019.11.13. 
* gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
3d391d2df4
gnu: r-webshot: Update to 0.5.2. 
* gnu/packages/cran.scm (r-webshot): Update to 0.5.2.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
2cef54c060
gnu: r-insight: Update to 0.7.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.7.0.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
24edd279e4
gnu: Add r-effectsize. 
* gnu/packages/cran.scm (r-effectsize): New variable.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
7b4b1136cc
gnu: r-rcppeigen: Update to 0.3.3.7.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0.
 2019-11-25 14:05:38 +01:00
Ricardo Wurmus
55bb00b198
gnu: r-rlang: Update to 0.4.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.2.
 2019-11-25 14:05:37 +01:00
Ricardo Wurmus
0dc62774e1
gnu: r-digest: Update to 0.6.23. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.23.
 2019-11-25 14:05:37 +01:00
Ricardo Wurmus
5b720c15d1
gnu: r-pheatmap: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pheatmap): Move from here...
* gnu/packages/cran.scm (r-pheatmap): ...to here.
 2019-11-25 14:05:37 +01:00
Ricardo Wurmus
54a8cb963d
gnu: r-scales: Update to 1.1.0. 
* gnu/packages/cran.scm (r-scales): Update to 1.1.0.
[propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle.
 2019-11-25 14:05:37 +01:00
Ricardo Wurmus
46130b7bee
gnu: r-scales: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-scales): Move variable from here...
* gnu/packages/cran.scm (r-scales): ...to here.
 2019-11-25 14:05:32 +01:00
Efraim Flashner
aca2bf51b7
gnu: sdsl-lite: Don't use bundled libraries. 
* gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled
libraries in a snippet. Add patch to link to external libraries.
[arguments]: Add phase to install static library.
[native-inputs]: Add libdivsufsort.
 2019-11-25 14:08:32 +02:00
Efraim Flashner
2b04bb3b4e
gnu: sdsl-lite: Remove unused inputs. 
Documentation also wants graphviz, which drastically increases
'guiz size sdsl-lite'.

* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove
doxygen.
 2019-11-25 14:08:32 +02:00
Efraim Flashner
3546771cc8
gnu: libdivsufsort: Move to datastructures.scm. 
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
 2019-11-25 14:08:32 +02:00
Efraim Flashner
31872b3e75
gnu: Add boost-static. 
* gnu/packages/boost.scm (boost-static): New variable.
 2019-11-25 14:08:31 +02:00
Efraim Flashner
775373b872
gnu: coq-bignums: Don't use unstable tarball. 
* gnu/pacakges/coq.scm (coq-bignums)[source]: Download using git-fetch.
 2019-11-25 14:08:31 +02:00
Efraim Flashner
8b1fd3cafd
gnu: bioperl-minimal: Don't use unstable tarball. 
* gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download
using git-fetch.
 2019-11-25 14:08:31 +02:00