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Author SHA1 Message Date
Ricardo Wurmus
1e8bfc4cf9
gnu: r-qtl: Correct indentation. 
* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.
 2020-09-11 22:00:30 +02:00
zimoun
d4e2ec1b8a
gnu: r-absfiltergsea: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
77c7394086
gnu: r-diversitree: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
415aa8a583
gnu: r-phangorn: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:21 +02:00
zimoun
f9c0b2e05a
gnu: r-seurat: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:17 +02:00
zimoun
b31c364467
gnu: r-maldiquant: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:12 +02:00
zimoun
30aaee3306
gnu: r-seqminer: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:07 +02:00
zimoun
66a8e62070
gnu: r-qtl2: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:03 +02:00
zimoun
496a52dc41
gnu: r-qtl: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:58 +02:00
zimoun
c23ff34423
gnu: r-igraph: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:55 +02:00
zimoun
1dc50e4190
gnu: r-diffusionmap: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:49 +02:00
zimoun
d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:48:38 +02:00
zimoun
b17ace24ca
gnu: r-codedepends: Comment why it is in bioconductor.scm. 
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
 2020-09-11 21:46:51 +02:00
Peter Lo
7e88ee9f02
gnu: Add r-fhtest. 
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:33:02 +02:00
Peter Lo
655c4bb25c
gnu: Add r-interval. 
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:01:30 +02:00
Peter Lo
962c7ceff5
gnu: Add r-perm. 
* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:18:46 +02:00
Peter Lo
4a13770003
gnu: Add r-mlecens. 
* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:16:51 +02:00
Peter Lo
488001eb3f
gnu: Add r-icens. 
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:13:58 +02:00
Ricardo Wurmus
19748ea380
gnu: r-tidymodels: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
cecb700853
gnu: r-infer: Update to 0.5.3. 
* gnu/packages/cran.scm (r-infer): Update to 0.5.3.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
6edf558fd0
gnu: Add r-modeldata. 
* gnu/packages/cran.scm (r-modeldata): New variable.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
37e9a7fabf
gnu: r-parsnip: Update to 0.1.3. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
 2020-09-11 19:04:10 +02:00
Ricardo Wurmus
f5d7f42ae2
gnu: r-tidytext: Update to 0.2.5. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.
 2020-09-11 19:04:06 +02:00
Ricardo Wurmus
0fa58b2488
gnu: r-tidypredict: Update to 0.4.6. 
* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.
 2020-09-11 19:04:01 +02:00
Ricardo Wurmus
471f0aacd2
gnu: r-tune: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.1.
[propagated-inputs]: Add r-vctrs.
 2020-09-11 19:03:58 +02:00
Ricardo Wurmus
dfa2cfeb3e
gnu: r-dials: Update to 0.0.8. 
* gnu/packages/cran.scm (r-dials): Update to 0.0.8.
 2020-09-11 19:03:54 +02:00
Ricardo Wurmus
a1d7ec4893
gnu: r-yardstick: Update to 0.0.7. 
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7.
[propagated-inputs]: Remove r-rcpp.
 2020-09-11 19:03:51 +02:00
Ricardo Wurmus
b0b24be7b7
gnu: r-workflows: Update to 0.1.3. 
* gnu/packages/cran.scm (r-workflows): Update to 0.1.3.
 2020-09-11 19:03:46 +02:00
Ricardo Wurmus
820f415174
gnu: r-hardhat: Update to 0.1.4. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.4.
 2020-09-11 19:03:43 +02:00
Peter Lo
23bd6f6ef1
gnu: Add r-tidymodels. 
* gnu/packages/cran.scm (r-tidymodels): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
48d40c7717
gnu: Add r-infer. 
* gnu/packages/cran.scm (r-infer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
35f033750f
gnu: Add r-parsnip. 
* gnu/packages/cran.scm (r-parsnip): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
8e79e3dd3d
gnu: Add r-tidytext. 
* gnu/packages/cran.scm (r-tidytext): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
39e6cac947
gnu: Add r-hunspell. 
* gnu/packages/cran.scm (r-hunspell): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
f90b4b380a
gnu: Add r-tokenizers. 
* gnu/packages/cran.scm (r-tokenizers): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
05bda85901
gnu: Add r-janeaustenr. 
* gnu/packages/cran.scm (r-janeaustenr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
156c558866
gnu: Add r-tidypredict. 
* gnu/packages/cran.scm (r-tidypredict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
3dbe8a57ec
gnu: Add r-tidyposterior. 
* gnu/packages/cran.scm (r-tidyposterior): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
e309e17f84
gnu: Add r-tune. 
* gnu/packages/cran.scm (r-tune): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
ca379399d2
gnu: Add r-dials. 
* gnu/packages/cran.scm (r-dials): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
26beaffa2d
gnu: Add r-dicedesign. 
* gnu/packages/cran.scm (r-dicedesign): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
fb76feaf7e
gnu: Add r-rsample. 
* gnu/packages/cran.scm (r-rsample): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
d1843fec10
gnu: Add r-yardstick. 
* gnu/packages/cran.scm (r-yardstick): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
c4e34dda85
gnu: Add r-gpfit. 
* gnu/packages/cran.scm (r-gpfit): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
ccf2d02a19
gnu: Add r-hardhat. 
* gnu/packages/cran.scm (r-hardhat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
8d58b5b2a7
gnu: Add r-workflows. 
* gnu/packages/cran.scm (r-workflows): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:46 +02:00
Alexandros Theodotou
24e37fbbc4
gnu: Add reproc. 
* gnu/packages/cpp.scm (reproc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-11 17:53:59 +02:00
Ludovic Courtès
6dd8ffc574
daemon: Simplify interface with 'guix authenticate'. 
There's no reason at this point to mimic the calling convention of the
'openssl' command.

* nix/libstore/local-store.cc (LocalStore::exportPath): Add only "sign"
and HASH to ARGS.  Remove 'tmpDir' and 'hashFile'.
(LocalStore::importPath): Add only "verify" and SIGNATURE to
* guix/scripts/authenticate.scm (guix-authenticate): Adjust
accordingly; remove the OpenSSL-style clauses.
(read-hash-data): Remove.
(sign-with-key): Replace 'port' with 'sha256' and adjust accordingly.
(validate-signature): Export SIGNATURE to be a canonical sexp.
* tests/guix-authenticate.sh: Adjust tests accordingly.
 2020-09-11 17:53:58 +02:00
Ludovic Courtès
7a68d3ccad
doc: Distinguish the "nar bundle" format from "nar". 
* doc/guix.texi (Invoking guix archive): Introduce the term "nar bundle"
and clarify what the output of "guix archive --export" really is.
* guix/nar.scm (restore-one-item, restore-file-set): Use the term "nar
bundle" in docstrings.
 2020-09-11 17:53:58 +02:00
Ludovic Courtès
6310283bae
store: Test 'import-paths' with unauthorized and unsigned nar bundles. 
* tests/store.scm ("import not signed")
("import signed by unauthorized key"): New tests.
 2020-09-11 17:53:58 +02:00